Wall clock time and date at job start Wed Apr 1 2020 05:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47321 * 239.99877 * 3 2 1 5 5 H 1.48507 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47363 * 119.99661 * 3 2 1 7 7 C 1.39949 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99695 * 162.23093 * 7 2 1 9 9 C 1.41392 * 120.00109 * 342.23232 * 7 2 1 10 10 C 1.40733 * 120.24463 * 335.27129 * 9 7 2 11 11 C 1.37593 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24657 * 359.72560 * 11 10 9 13 13 C 1.38614 * 120.49973 * 0.55067 * 12 11 10 14 14 S 1.76200 * 119.87500 * 179.72626 * 13 12 11 15 15 O 1.42098 * 106.40393 * 156.19037 * 14 13 12 16 16 O 1.42099 * 106.40593 * 23.26425 * 14 13 12 17 17 N 1.65603 * 107.21612 * 269.72745 * 14 13 12 18 18 C 1.39677 * 119.99922 * 65.00023 * 17 14 13 19 19 C 1.38930 * 120.07309 * 45.00342 * 18 17 14 20 20 C 1.38089 * 119.92579 * 179.97438 * 19 18 17 21 21 C 1.38300 * 120.07190 * 0.27236 * 20 19 18 22 22 C 1.38263 * 120.15264 * 359.44986 * 21 20 19 23 23 N 1.48000 * 119.96780 * 180.27779 * 22 21 20 24 24 O 1.21806 * 120.00484 * 180.27014 * 23 22 21 25 25 O 1.21802 * 119.99836 * 0.27226 * 23 22 21 26 26 C 1.38130 * 120.07145 * 0.54740 * 22 21 20 27 27 C 1.37632 * 120.24812 * 359.45283 * 13 12 11 28 28 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.12499 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.87985 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.75150 * 180.30604 * 12 11 10 32 32 H 0.96996 * 120.00408 * 244.99677 * 17 14 13 33 33 H 1.08002 * 120.04059 * 359.95180 * 19 18 17 34 34 H 1.07998 * 119.96252 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.92542 * 179.69919 * 21 20 19 36 36 H 1.08004 * 120.03744 * 179.74526 * 26 22 21 37 37 H 1.08002 * 120.12840 * 180.25039 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 0.2234 -2.3631 1.2149 11 6 -0.4072 -3.5324 1.5730 12 6 0.0616 -4.7505 1.1048 13 6 1.1753 -4.8062 0.2814 14 16 1.7612 -6.3636 -0.2982 15 8 2.4871 -6.1005 -1.4911 16 8 0.6557 -7.2546 -0.2416 17 7 2.8633 -6.9152 0.8079 18 6 2.4522 -7.2337 2.1042 19 6 1.2957 -7.9768 2.3050 20 6 0.8924 -8.2904 3.5879 21 6 1.6353 -7.8609 4.6724 22 6 2.7900 -7.1261 4.4760 23 7 3.5852 -6.6737 5.6394 24 8 4.5999 -6.0221 5.4673 25 8 3.2251 -6.9530 6.7689 26 6 3.1991 -6.8089 3.1954 27 6 1.8218 -3.6492 -0.0896 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1456 -1.4151 1.5778 30 1 -1.2734 -3.5011 2.2173 31 1 -0.4425 -5.6630 1.3870 32 1 3.7943 -7.0171 0.5556 33 1 0.7124 -8.3085 1.4587 34 1 -0.0068 -8.8677 3.7447 35 1 1.3151 -8.1034 5.6749 36 1 4.0989 -6.2313 3.0428 37 1 2.6869 -3.6946 -0.7345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619461142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:56 Heat of formation + Delta-G solvation = -29.244870 kcal Electronic energy + Delta-G solvation = -27652.809217 eV Core-core repulsion = 23490.229210 eV Total energy + Delta-G solvation = -4162.580007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22976 -39.89769 -37.79845 -37.06721 -36.61937 -35.72754 -35.43440 -33.96870 -32.06601 -30.22204 -29.98202 -29.71583 -26.68251 -25.61887 -23.16840 -22.62498 -22.11398 -21.14812 -20.03112 -19.15047 -18.74040 -18.10925 -17.68189 -17.55448 -16.79222 -16.59600 -16.12727 -15.54902 -15.28484 -15.05810 -14.79906 -14.36026 -13.69154 -13.59260 -13.45513 -13.00220 -12.70781 -12.32440 -12.11859 -12.01170 -11.90909 -11.65506 -11.59860 -11.53120 -11.52455 -11.42360 -11.20898 -11.18137 -10.99808 -10.96261 -10.70801 -9.93508 -9.78596 -9.73094 -9.44352 -8.91575 -8.21491 -7.84630 -7.02820 -4.65187 -0.26881 0.39795 0.82797 1.25235 1.32877 1.97846 2.51750 2.94506 2.95577 3.00043 3.03617 3.10269 3.75735 3.83906 4.23018 4.26483 4.37275 4.49218 4.58683 4.70553 4.86692 5.10394 5.26684 5.42759 5.52861 5.73688 5.86709 5.92037 5.98144 6.08952 6.33523 6.49946 6.58559 6.62685 6.76562 6.92548 7.06070 7.20596 7.56948 7.58115 7.67176 7.80470 8.27051 8.54783 8.58472 9.92750 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.003840 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.827977 B = 7289.189689 C = 8757.163933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.459 4.459 8 H 0.084 0.916 9 C 0.093 3.907 10 C -0.113 4.113 11 C -0.120 4.120 12 C -0.147 4.147 13 C -0.630 4.630 14 S 2.679 3.321 15 O -0.954 6.954 16 O -0.963 6.963 17 N -1.059 6.059 18 C 0.168 3.832 19 C -0.101 4.101 20 C -0.093 4.093 21 C -0.070 4.070 22 C -0.027 4.027 23 N 0.030 4.970 24 O -0.158 6.158 25 O -0.162 6.162 26 C -0.071 4.071 27 C -0.127 4.127 28 H 0.286 0.714 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.428 0.572 33 H 0.177 0.823 34 H 0.154 0.846 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.021 -12.443 5.869 13.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.144 4.144 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.102 0.898 9 C 0.089 3.911 10 C -0.133 4.133 11 C -0.139 4.139 12 C -0.169 4.169 13 C -0.724 4.724 14 S 2.778 3.222 15 O -0.945 6.945 16 O -0.954 6.954 17 N -0.807 5.807 18 C 0.070 3.930 19 C -0.122 4.122 20 C -0.112 4.112 21 C -0.090 4.090 22 C -0.110 4.110 23 N 0.550 4.450 24 O -0.375 6.375 25 O -0.377 6.377 26 C -0.093 4.093 27 C -0.148 4.148 28 H 0.097 0.903 29 H 0.144 0.856 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.265 0.735 33 H 0.194 0.806 34 H 0.172 0.828 35 H 0.172 0.828 36 H 0.177 0.823 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.053 -12.947 4.454 13.732 hybrid contribution 0.875 1.656 0.591 1.964 sum 1.929 -11.291 5.045 12.516 Atomic orbital electron populations 1.69756 1.07726 1.29998 1.34060 1.25959 0.94813 1.01698 0.91910 0.86264 0.80143 0.79584 0.80280 1.18707 1.20125 1.18566 1.19607 0.98404 0.90971 1.39775 0.89805 1.17666 0.91794 0.91978 0.89622 1.21680 0.97391 0.97209 0.96989 1.20808 0.99406 0.93100 1.00595 1.20052 0.97225 0.97540 1.02077 1.29455 1.09490 1.16926 1.16481 1.02175 0.72705 0.74869 0.72424 1.93581 1.72523 1.86108 1.42242 1.93458 1.51778 1.64231 1.85888 1.53666 1.25740 1.79802 1.21461 1.17039 0.95453 0.96516 0.83999 1.22500 0.95813 0.93389 1.00479 1.21095 0.99978 0.99671 0.90452 1.21095 0.91464 0.94483 1.01993 1.20839 0.96845 1.07732 0.85616 1.43590 1.00528 0.98561 1.02337 1.94563 1.13887 1.36667 1.92362 1.94521 1.74172 1.60155 1.08894 1.20976 1.02010 0.97290 0.89073 1.20741 1.01192 0.91707 1.01204 0.90311 0.85633 0.88246 0.87640 0.73545 0.80582 0.82810 0.82812 0.82348 0.86904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.18 10.97 55.55 0.61 -18.57 16 2 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 3 Si 0.91 17.63 29.59 -169.99 -5.03 12.60 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.46 -11.40 9.05 -37.74 -0.34 -11.74 16 8 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 9 C 0.09 2.31 5.57 -106.83 -0.60 1.72 16 10 C -0.11 -2.71 8.70 -38.88 -0.34 -3.04 16 11 C -0.12 -2.55 10.02 -39.66 -0.40 -2.95 16 12 C -0.15 -2.97 9.53 -39.29 -0.37 -3.34 16 13 C -0.63 -12.72 5.90 -39.66 -0.23 -12.95 16 14 S 2.68 44.06 5.66 -107.50 -0.61 43.45 16 15 O -0.95 -18.05 17.27 -57.17 -0.99 -19.04 16 16 O -0.96 -16.29 14.18 -57.17 -0.81 -17.10 16 17 N -1.06 -12.99 5.77 32.41 0.19 -12.80 16 18 C 0.17 2.03 6.21 -83.79 -0.52 1.51 16 19 C -0.10 -1.12 9.18 -39.38 -0.36 -1.48 16 20 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 21 C -0.07 -0.69 9.55 -39.55 -0.38 -1.07 16 22 C -0.03 -0.33 6.85 -79.99 -0.55 -0.88 16 23 N 0.03 0.43 4.45 33.94 0.15 0.58 16 24 O -0.16 -2.42 18.45 -29.46 -0.54 -2.96 16 25 O -0.16 -2.31 18.44 -29.46 -0.54 -2.86 16 26 C -0.07 -0.85 9.48 -39.38 -0.37 -1.23 16 27 C -0.13 -2.89 9.26 -38.88 -0.36 -3.25 16 28 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 29 H 0.13 3.08 6.18 -52.49 -0.32 2.75 16 30 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 31 H 0.11 1.85 7.59 -52.48 -0.40 1.45 16 32 H 0.43 3.98 8.95 -34.48 -0.31 3.68 16 33 H 0.18 2.00 5.58 -52.49 -0.29 1.71 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.22 7.60 -52.49 -0.40 0.82 16 36 H 0.16 1.79 7.61 -52.48 -0.40 1.39 16 37 H 0.11 2.44 7.60 -52.49 -0.40 2.04 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -29.94 344.03 -10.62 -40.56 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -2.92 Total: 9.19 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: -5.31 Total: -38.24 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: 0.95 Total: -30.79 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -2.88 Total: -41.96 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 44.06 SS G_CDS: -0.61 Total: 43.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.94 -10.62 -40.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619461142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.312 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds