Wall clock time and date at job start Wed Apr 1 2020 05:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86797 * 120.00178 * 2 1 4 4 H 1.48502 * 109.47321 * 239.99877 * 3 2 1 5 5 H 1.48507 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47363 * 119.99661 * 3 2 1 7 7 C 1.39949 * 119.99888 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99695 * 162.23093 * 7 2 1 9 9 C 1.41392 * 120.00109 * 342.23232 * 7 2 1 10 10 C 1.40733 * 120.24463 * 335.27129 * 9 7 2 11 11 C 1.37593 * 119.74734 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24657 * 359.72560 * 11 10 9 13 13 C 1.38614 * 120.49973 * 0.55067 * 12 11 10 14 14 S 1.76200 * 119.87500 * 179.72626 * 13 12 11 15 15 O 1.42098 * 106.40393 * 156.19037 * 14 13 12 16 16 O 1.42099 * 106.40593 * 23.26425 * 14 13 12 17 17 N 1.65603 * 107.21612 * 269.72745 * 14 13 12 18 18 C 1.39677 * 119.99922 * 65.00023 * 17 14 13 19 19 C 1.38930 * 120.07309 * 45.00342 * 18 17 14 20 20 C 1.38089 * 119.92579 * 179.97438 * 19 18 17 21 21 C 1.38300 * 120.07190 * 0.27236 * 20 19 18 22 22 C 1.38263 * 120.15264 * 359.44986 * 21 20 19 23 23 N 1.48000 * 119.96780 * 180.27779 * 22 21 20 24 24 O 1.21806 * 120.00484 * 180.27014 * 23 22 21 25 25 O 1.21802 * 119.99836 * 0.27226 * 23 22 21 26 26 C 1.38130 * 120.07145 * 0.54740 * 22 21 20 27 27 C 1.37632 * 120.24812 * 359.45283 * 13 12 11 28 28 H 0.96996 * 120.00008 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.12499 * 359.97438 * 10 9 7 30 30 H 1.07996 * 119.87985 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.75150 * 180.30604 * 12 11 10 32 32 H 0.96996 * 120.00408 * 244.99677 * 17 14 13 33 33 H 1.08002 * 120.04059 * 359.95180 * 19 18 17 34 34 H 1.07998 * 119.96252 * 179.97438 * 20 19 18 35 35 H 1.08000 * 119.92542 * 179.69919 * 21 20 19 36 36 H 1.08004 * 120.03744 * 179.74526 * 26 22 21 37 37 H 1.08002 * 120.12840 * 180.25039 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6963 -1.2125 5 1 1.2772 2.7464 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0494 -1.2344 -0.2849 9 6 1.3515 -2.4071 0.3747 10 6 0.2234 -2.3631 1.2149 11 6 -0.4072 -3.5324 1.5730 12 6 0.0616 -4.7505 1.1048 13 6 1.1753 -4.8062 0.2814 14 16 1.7612 -6.3636 -0.2982 15 8 2.4871 -6.1005 -1.4911 16 8 0.6557 -7.2546 -0.2416 17 7 2.8633 -6.9152 0.8079 18 6 2.4522 -7.2337 2.1042 19 6 1.2957 -7.9768 2.3050 20 6 0.8924 -8.2904 3.5879 21 6 1.6353 -7.8609 4.6724 22 6 2.7900 -7.1261 4.4760 23 7 3.5852 -6.6737 5.6394 24 8 4.5999 -6.0221 5.4673 25 8 3.2251 -6.9530 6.7689 26 6 3.1991 -6.8089 3.1954 27 6 1.8218 -3.6492 -0.0896 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1456 -1.4151 1.5778 30 1 -1.2734 -3.5011 2.2173 31 1 -0.4425 -5.6630 1.3870 32 1 3.7943 -7.0171 0.5556 33 1 0.7124 -8.3085 1.4587 34 1 -0.0068 -8.8677 3.7447 35 1 1.3151 -8.1034 5.6749 36 1 4.0989 -6.2313 3.0428 37 1 2.6869 -3.6946 -0.7345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619461142.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:55 Heat of formation + Delta-G solvation = -46.840483 kcal Electronic energy + Delta-G solvation = -27653.572220 eV Core-core repulsion = 23490.229210 eV Total energy + Delta-G solvation = -4163.343010 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.27803 -40.81161 -39.50427 -38.46516 -37.70783 -37.13162 -36.43480 -35.71389 -32.94366 -31.96838 -31.67212 -30.65638 -27.69073 -27.39267 -24.03078 -23.77693 -23.60316 -22.86309 -21.18209 -20.39583 -19.86617 -19.53483 -18.92340 -18.62240 -17.88150 -17.75943 -17.51032 -16.96014 -16.68611 -16.33697 -16.30393 -15.34771 -15.17348 -15.07907 -14.52508 -14.36658 -13.97660 -13.79849 -13.48805 -13.39176 -13.20467 -13.12913 -13.05495 -12.93506 -12.77545 -12.68376 -12.62492 -12.48573 -12.31620 -12.24987 -12.00343 -11.61892 -11.39039 -11.17374 -10.62156 -9.96110 -9.83287 -9.60897 -8.77436 -6.49785 -1.27591 -0.88020 -0.06417 0.26013 0.31603 0.34218 0.80069 1.34949 1.43632 1.47480 1.79442 2.14510 2.21485 2.43170 2.60198 3.20760 3.43127 3.44086 3.53563 3.63811 3.81527 3.99790 4.22449 4.26398 4.37576 4.63066 4.74994 4.79493 4.84356 4.90093 4.98752 5.04961 5.14084 5.15687 5.35050 5.43978 5.48492 5.77431 5.83165 5.88827 6.05351 6.45818 6.47508 6.75445 6.79239 8.20532 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010281 B = 0.003840 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.827977 B = 7289.189689 C = 8757.163933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.266 1.266 6 H -0.260 1.260 7 C -0.499 4.499 8 H 0.081 0.919 9 C 0.062 3.938 10 C -0.139 4.139 11 C -0.124 4.124 12 C -0.141 4.141 13 C -0.641 4.641 14 S 2.718 3.282 15 O -0.979 6.979 16 O -0.960 6.960 17 N -1.044 6.044 18 C 0.151 3.849 19 C -0.104 4.104 20 C -0.075 4.075 21 C -0.059 4.059 22 C -0.043 4.043 23 N 0.031 4.969 24 O -0.202 6.202 25 O -0.152 6.152 26 C -0.078 4.078 27 C -0.147 4.147 28 H 0.292 0.708 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.139 0.861 32 H 0.441 0.559 33 H 0.179 0.821 34 H 0.197 0.803 35 H 0.179 0.821 36 H 0.156 0.844 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.903 -14.515 6.749 16.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.184 1.184 7 C -0.528 4.528 8 H 0.099 0.901 9 C 0.059 3.941 10 C -0.158 4.158 11 C -0.143 4.143 12 C -0.162 4.162 13 C -0.731 4.731 14 S 2.812 3.188 15 O -0.969 6.969 16 O -0.950 6.950 17 N -0.797 5.797 18 C 0.053 3.947 19 C -0.125 4.125 20 C -0.094 4.094 21 C -0.078 4.078 22 C -0.127 4.127 23 N 0.547 4.453 24 O -0.409 6.409 25 O -0.373 6.373 26 C -0.101 4.101 27 C -0.168 4.168 28 H 0.103 0.897 29 H 0.129 0.871 30 H 0.145 0.855 31 H 0.157 0.843 32 H 0.281 0.719 33 H 0.196 0.804 34 H 0.214 0.786 35 H 0.196 0.804 36 H 0.174 0.826 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.019 -14.951 5.308 15.865 hybrid contribution 1.121 2.003 0.410 2.332 sum 1.103 -12.947 5.718 14.197 Atomic orbital electron populations 1.69800 1.08955 1.31117 1.34906 1.26742 0.95525 1.04543 0.91005 0.85246 0.78862 0.75520 0.80154 1.18361 1.18970 1.18441 1.19866 0.98673 0.92323 1.41963 0.90127 1.18025 0.92672 0.93012 0.90399 1.21675 0.98193 0.97779 0.98195 1.21160 0.99863 0.92756 1.00563 1.20501 0.96651 0.98297 1.00707 1.30114 1.09123 1.18594 1.15237 1.01152 0.72568 0.73234 0.71851 1.93551 1.73080 1.86191 1.44073 1.93461 1.52465 1.63050 1.86014 1.53162 1.26051 1.79043 1.21398 1.17149 0.96416 0.97797 0.83305 1.22707 0.95093 0.92955 1.01730 1.21554 1.00572 0.98456 0.88823 1.21510 0.89986 0.92670 1.03683 1.21049 0.97739 1.09158 0.84755 1.43885 1.00458 0.98175 1.02819 1.94569 1.15212 1.38529 1.92573 1.94485 1.73775 1.59394 1.09658 1.20995 1.02267 0.97519 0.89327 1.20845 1.01839 0.92223 1.01938 0.89684 0.87119 0.85524 0.84286 0.71883 0.80366 0.78568 0.80413 0.82605 0.87005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.21 10.97 21.83 0.24 -40.98 16 2 C 0.04 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 5 H -0.27 -9.41 7.11 99.48 0.71 -8.70 16 6 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 7 C -0.50 -26.02 9.05 23.46 0.21 -25.81 16 8 H 0.08 4.04 7.91 -2.90 -0.02 4.02 16 9 C 0.06 3.22 5.57 -21.29 -0.12 3.10 16 10 C -0.14 -6.84 8.70 22.73 0.20 -6.64 16 11 C -0.12 -5.22 10.02 22.22 0.22 -5.00 16 12 C -0.14 -5.40 9.53 22.46 0.21 -5.19 16 13 C -0.64 -25.44 5.90 22.22 0.13 -25.31 16 14 S 2.72 84.78 5.66 -56.49 -0.32 84.46 16 15 O -0.98 -36.22 17.27 -128.00 -2.21 -38.43 16 16 O -0.96 -29.54 14.18 -128.00 -1.82 -31.36 16 17 N -1.04 -23.81 5.77 -51.37 -0.30 -24.10 16 18 C 0.15 3.29 6.21 38.21 0.24 3.53 16 19 C -0.10 -1.90 9.18 22.40 0.21 -1.69 16 20 C -0.08 -0.96 10.04 22.25 0.22 -0.74 16 21 C -0.06 -0.93 9.55 22.29 0.21 -0.71 16 22 C -0.04 -0.98 6.85 36.36 0.25 -0.73 16 23 N 0.03 0.85 4.45 -46.52 -0.21 0.65 16 24 O -0.20 -6.29 18.45 18.88 0.35 -5.94 16 25 O -0.15 -4.13 18.44 18.88 0.35 -3.78 16 26 C -0.08 -1.79 9.48 22.40 0.21 -1.58 16 27 C -0.15 -6.88 9.26 22.73 0.21 -6.67 16 28 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 29 H 0.11 5.68 6.18 -2.91 -0.02 5.66 16 30 H 0.13 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.14 4.34 7.59 -2.91 -0.02 4.31 16 32 H 0.44 7.63 8.95 -96.75 -0.87 6.76 16 33 H 0.18 3.28 5.58 -2.91 -0.02 3.27 16 34 H 0.20 0.88 8.06 -2.91 -0.02 0.85 16 35 H 0.18 1.98 7.60 -2.91 -0.02 1.95 16 36 H 0.16 3.55 7.61 -2.91 -0.02 3.53 16 37 H 0.11 5.05 7.60 -2.91 -0.02 5.03 16 Total: -1.00 -67.06 344.03 1.26 -65.80 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.29 Total: 25.87 kcal Atomic # 6 Polarization: -74.03 SS G_CDS: 2.85 Total: -71.18 kcal Atomic # 7 Polarization: -64.16 SS G_CDS: -0.26 Total: -64.43 kcal Atomic # 8 Polarization: -76.18 SS G_CDS: -3.33 Total: -79.51 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 84.78 SS G_CDS: -0.32 Total: 84.46 kcal Total: -67.06 1.26 -65.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619461142.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.962 kcal (2) G-P(sol) polarization free energy of solvation -67.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds