Wall clock time and date at job start Wed Apr 1 2020 06:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42094 * 110.53912 * 2 1 4 4 O 1.42097 * 110.54389 * 223.24814 * 2 1 3 5 5 N 1.65601 * 104.44688 * 111.62230 * 2 1 3 6 6 C 1.46496 * 119.99880 * 65.00398 * 5 2 1 7 7 C 1.53001 * 109.47291 * 164.99700 * 6 5 2 8 8 N 1.46497 * 109.47506 * 179.97438 * 7 6 5 9 9 S 1.65603 * 120.00269 * 164.99575 * 8 7 6 10 10 O 1.42101 * 106.40420 * 311.46503 * 9 8 7 11 11 O 1.42093 * 106.40486 * 178.54249 * 9 8 7 12 12 C 1.76202 * 107.21304 * 65.00274 * 9 8 7 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 8 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 8 26 26 H 1.09000 * 109.47498 * 308.37630 * 1 2 3 27 27 H 1.08998 * 109.47630 * 68.37780 * 1 2 3 28 28 H 1.09000 * 109.47338 * 188.37566 * 1 2 3 29 29 H 0.96996 * 120.00084 * 244.99939 * 5 2 1 30 30 H 1.09003 * 109.47870 * 44.99762 * 6 5 2 31 31 H 1.09004 * 109.47301 * 284.99425 * 6 5 2 32 32 H 1.08996 * 109.47119 * 59.99718 * 7 6 5 33 33 H 1.09000 * 109.47134 * 300.00311 * 7 6 5 34 34 H 0.97003 * 120.00209 * 345.00253 * 8 7 6 35 35 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 36 36 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 37 37 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 38 38 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2271 -0.5909 1.4908 6 6 1.8907 -1.9705 1.8508 7 6 2.6874 -2.3830 3.0902 8 7 2.3506 -3.7624 3.4506 9 16 3.3122 -4.6008 4.5065 10 8 4.6487 -4.4278 4.0560 11 8 2.7075 -5.8756 4.6743 12 6 3.2041 -3.7895 6.0669 13 6 4.0922 -2.7715 6.3791 14 6 4.0229 -2.1287 7.6052 15 6 3.0620 -2.4879 8.5230 16 6 2.1519 -3.5156 8.2147 17 6 1.1610 -3.8935 9.1499 18 1 0.7349 -4.8852 9.1141 19 6 0.7324 -2.9825 10.1219 20 7 0.9668 -1.7045 9.9692 21 14 -0.1744 -3.5912 11.6374 22 1 0.7927 -3.7877 12.7472 23 1 -1.1934 -2.5890 12.0404 24 1 -0.8431 -4.8809 11.3294 25 6 2.2354 -4.1651 6.9690 26 1 -0.3634 0.6380 0.8056 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.6919 -0.0236 2.1256 30 1 2.1393 -2.6334 1.0220 31 1 0.8241 -2.0405 2.0647 32 1 2.4388 -1.7203 3.9190 33 1 3.7540 -2.3130 2.8764 34 1 1.5643 -4.1848 3.0707 35 1 4.8464 -2.4798 5.6630 36 1 4.7225 -1.3402 7.8396 37 1 3.0072 -1.9831 9.4761 38 1 0.6694 -1.0730 10.6427 39 1 1.5419 -4.9553 6.7221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619475073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:16 Heat of formation + Delta-G solvation = -130.239141 kcal Electronic energy + Delta-G solvation = -25821.761416 eV Core-core repulsion = 21790.245919 eV Total energy + Delta-G solvation = -4031.515496 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -37.71186 -37.48176 -37.02548 -36.62241 -36.23829 -35.37964 -33.96529 -33.88666 -30.14193 -29.85846 -29.85392 -27.89000 -25.55386 -23.02220 -21.95097 -21.04637 -19.86417 -19.20556 -18.09728 -18.04748 -17.23750 -16.65384 -16.32183 -16.02421 -15.86948 -15.44521 -15.13608 -14.97829 -14.78192 -14.44293 -13.70772 -13.55917 -13.53228 -13.40388 -12.67389 -12.64978 -12.60284 -12.39504 -12.30276 -12.24882 -11.96316 -11.67917 -11.59455 -11.47047 -11.43746 -11.42440 -11.31918 -11.06049 -10.94967 -10.65380 -9.93955 -9.81490 -9.72733 -9.41868 -9.28187 -8.11162 -7.77511 -6.99262 -4.60082 -0.07511 0.92602 2.11774 2.36212 2.56895 2.95918 3.00342 3.01784 3.45471 3.51796 3.77838 3.86333 4.15775 4.31643 4.38116 4.45393 4.60433 4.80019 4.91973 5.09755 5.23500 5.29594 5.33373 5.52516 5.68380 5.93313 6.00100 6.11155 6.59269 6.63170 6.69882 6.76854 6.96479 7.07275 7.15533 7.31363 7.66373 7.74871 7.87945 8.34155 8.60650 8.65285 9.96078 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002749 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.859318 B =10183.628492 C =11286.483238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.619 3.381 3 O -0.959 6.959 4 O -0.956 6.956 5 N -1.118 6.118 6 C 0.107 3.893 7 C 0.112 3.888 8 N -1.121 6.121 9 S 2.691 3.309 10 O -0.972 6.972 11 O -0.970 6.970 12 C -0.632 4.632 13 C -0.151 4.151 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.091 3.909 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.260 1.260 25 C -0.124 4.124 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.128 0.872 29 H 0.422 0.578 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.415 0.585 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.283 0.717 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 4.410 -12.990 14.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.710 3.290 3 O -0.949 6.949 4 O -0.946 6.946 5 N -0.878 5.878 6 C -0.021 4.021 7 C -0.016 4.016 8 N -0.879 5.879 9 S 2.787 3.213 10 O -0.962 6.962 11 O -0.960 6.960 12 C -0.724 4.724 13 C -0.172 4.172 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.145 4.145 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.147 0.853 29 H 0.257 0.743 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.248 0.752 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.662 4.117 -13.865 14.706 hybrid contribution -1.605 0.421 1.788 2.439 sum -4.267 4.538 -12.076 13.588 Atomic orbital electron populations 1.30533 1.28407 1.11798 1.11652 1.04608 0.77519 0.73793 0.73078 1.93630 1.77979 1.37646 1.85632 1.93627 1.76979 1.61825 1.62172 1.55460 1.74482 1.21078 1.36814 1.21487 0.99610 0.82048 0.98935 1.21341 1.00698 0.82739 0.96786 1.55509 1.44486 1.24385 1.63530 1.01631 0.72861 0.72999 0.73808 1.93523 1.35145 1.86399 1.81151 1.93546 1.77664 1.38171 1.86628 1.29716 1.08130 1.14166 1.20403 1.20091 1.00107 0.98252 0.98722 1.20817 0.98883 0.99550 0.94701 1.21653 0.93556 0.99445 0.99147 1.17692 0.91692 0.91107 0.90744 1.19649 1.18570 0.99970 1.10720 0.89850 1.25938 0.95067 0.94230 0.99076 1.69776 1.36715 1.02296 1.33077 0.86224 0.79370 0.79878 0.80902 1.19194 1.20173 1.18362 1.20780 0.97858 1.01948 0.93944 0.85055 0.85374 0.85304 0.74258 0.89222 0.90886 0.90276 0.89318 0.75157 0.87549 0.88356 0.85743 0.90557 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.82 10.89 101.05 1.10 -1.72 16 2 S 2.62 20.00 6.10 -107.50 -0.66 19.35 16 3 O -0.96 -10.74 18.08 -57.54 -1.04 -11.78 16 4 O -0.96 -10.87 17.50 -57.54 -1.01 -11.88 16 5 N -1.12 -8.12 5.89 -10.61 -0.06 -8.19 16 6 C 0.11 0.83 6.27 -4.04 -0.03 0.81 16 7 C 0.11 1.20 6.36 -4.04 -0.03 1.17 16 8 N -1.12 -13.84 6.00 -10.62 -0.06 -13.90 16 9 S 2.69 46.64 5.73 -107.50 -0.62 46.03 16 10 O -0.97 -18.70 16.75 -57.17 -0.96 -19.66 16 11 O -0.97 -19.11 17.26 -57.17 -0.99 -20.10 16 12 C -0.63 -12.93 5.94 -39.66 -0.24 -13.16 16 13 C -0.15 -3.06 9.53 -39.29 -0.37 -3.44 16 14 C -0.12 -2.56 10.02 -39.66 -0.40 -2.96 16 15 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 16 C 0.09 2.26 5.58 -106.82 -0.60 1.66 16 17 C -0.46 -11.38 9.05 -37.75 -0.34 -11.73 16 18 H 0.08 2.00 7.91 -52.48 -0.41 1.58 16 19 C 0.08 1.75 5.14 -17.34 -0.09 1.66 16 20 N -0.79 -18.87 10.95 55.55 0.61 -18.26 16 21 Si 0.91 17.49 29.60 -169.99 -5.03 12.46 16 22 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 23 H -0.28 -5.19 7.11 56.52 0.40 -4.78 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 25 C -0.12 -2.82 9.26 -38.87 -0.36 -3.18 16 26 H 0.13 0.43 8.14 -51.92 -0.42 0.01 16 27 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.13 0.38 8.14 -51.92 -0.42 -0.04 16 29 H 0.42 2.72 8.62 -34.47 -0.30 2.42 16 30 H 0.09 0.68 7.69 -51.93 -0.40 0.28 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.98 7.75 -51.93 -0.40 0.58 16 34 H 0.41 3.95 8.65 -34.47 -0.30 3.65 16 35 H 0.11 1.93 7.61 -52.48 -0.40 1.53 16 36 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.12 3.04 6.15 -52.49 -0.32 2.72 16 38 H 0.28 6.11 8.30 -40.82 -0.34 5.78 16 39 H 0.11 2.44 7.60 -52.49 -0.40 2.04 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -35.64 360.96 -10.66 -46.30 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -4.60 Total: 8.24 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: -1.68 Total: -34.05 kcal Atomic # 7 Polarization: -40.83 SS G_CDS: 0.48 Total: -40.35 kcal Atomic # 8 Polarization: -59.42 SS G_CDS: -3.99 Total: -63.41 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Atomic # 16 Polarization: 66.65 SS G_CDS: -1.27 Total: 65.37 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.64 -10.66 -46.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.937 kcal (2) G-P(sol) polarization free energy of solvation -35.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds