Wall clock time and date at job start Wed Apr 1 2020 06:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42094 * 110.53912 * 2 1 4 4 O 1.42097 * 110.54389 * 223.24814 * 2 1 3 5 5 N 1.65601 * 104.44688 * 111.62230 * 2 1 3 6 6 C 1.46496 * 119.99880 * 65.00398 * 5 2 1 7 7 C 1.53001 * 109.47291 * 164.99700 * 6 5 2 8 8 N 1.46497 * 109.47506 * 179.97438 * 7 6 5 9 9 S 1.65603 * 120.00269 * 164.99575 * 8 7 6 10 10 O 1.42101 * 106.40420 * 311.46503 * 9 8 7 11 11 O 1.42093 * 106.40486 * 178.54249 * 9 8 7 12 12 C 1.76202 * 107.21304 * 65.00274 * 9 8 7 13 13 C 1.38656 * 119.87802 * 270.24806 * 12 9 8 14 14 C 1.38611 * 120.50290 * 180.30014 * 13 12 9 15 15 C 1.37646 * 120.24720 * 359.45638 * 14 13 12 16 16 C 1.40700 * 119.74049 * 0.26612 * 15 14 13 17 17 C 1.41394 * 120.23887 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99918 * 204.39256 * 17 16 15 19 19 C 1.39939 * 120.00458 * 24.38628 * 17 16 15 20 20 N 1.30826 * 119.99815 * 17.86380 * 19 17 16 21 21 Si 1.86807 * 120.00442 * 197.86044 * 19 17 16 22 22 H 1.48504 * 109.46582 * 94.69503 * 21 19 17 23 23 H 1.48499 * 109.47234 * 214.69507 * 21 19 17 24 24 H 1.48502 * 109.46792 * 334.69880 * 21 19 17 25 25 C 1.37595 * 119.87364 * 90.00510 * 12 9 8 26 26 H 1.09000 * 109.47498 * 308.37630 * 1 2 3 27 27 H 1.08998 * 109.47630 * 68.37780 * 1 2 3 28 28 H 1.09000 * 109.47338 * 188.37566 * 1 2 3 29 29 H 0.96996 * 120.00084 * 244.99939 * 5 2 1 30 30 H 1.09003 * 109.47870 * 44.99762 * 6 5 2 31 31 H 1.09004 * 109.47301 * 284.99425 * 6 5 2 32 32 H 1.08996 * 109.47119 * 59.99718 * 7 6 5 33 33 H 1.09000 * 109.47134 * 300.00311 * 7 6 5 34 34 H 0.97003 * 120.00209 * 345.00253 * 8 7 6 35 35 H 1.08005 * 119.75084 * 0.05438 * 13 12 9 36 36 H 1.07994 * 119.87907 * 179.72408 * 14 13 12 37 37 H 1.07991 * 120.12819 * 180.25140 * 15 14 13 38 38 H 0.97002 * 120.00124 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.13108 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3125 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2271 -0.5909 1.4908 6 6 1.8907 -1.9705 1.8508 7 6 2.6874 -2.3830 3.0902 8 7 2.3506 -3.7624 3.4506 9 16 3.3122 -4.6008 4.5065 10 8 4.6487 -4.4278 4.0560 11 8 2.7075 -5.8756 4.6743 12 6 3.2041 -3.7895 6.0669 13 6 4.0922 -2.7715 6.3791 14 6 4.0229 -2.1287 7.6052 15 6 3.0620 -2.4879 8.5230 16 6 2.1519 -3.5156 8.2147 17 6 1.1610 -3.8935 9.1499 18 1 0.7349 -4.8852 9.1141 19 6 0.7324 -2.9825 10.1219 20 7 0.9668 -1.7045 9.9692 21 14 -0.1744 -3.5912 11.6374 22 1 0.7927 -3.7877 12.7472 23 1 -1.1934 -2.5890 12.0404 24 1 -0.8431 -4.8809 11.3294 25 6 2.2354 -4.1651 6.9690 26 1 -0.3634 0.6380 0.8056 27 1 -0.3634 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.6919 -0.0236 2.1256 30 1 2.1393 -2.6334 1.0220 31 1 0.8241 -2.0405 2.0647 32 1 2.4388 -1.7203 3.9190 33 1 3.7540 -2.3130 2.8764 34 1 1.5643 -4.1848 3.0707 35 1 4.8464 -2.4798 5.6630 36 1 4.7225 -1.3402 7.8396 37 1 3.0072 -1.9831 9.4761 38 1 0.6694 -1.0730 10.6427 39 1 1.5419 -4.9553 6.7221 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619475073.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:59:15 Heat of formation + Delta-G solvation = -160.703133 kcal Electronic energy + Delta-G solvation = -25823.082433 eV Core-core repulsion = 21790.245919 eV Total energy + Delta-G solvation = -4032.836514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.42838 -38.33819 -38.16393 -37.64321 -36.97135 -36.89218 -35.65449 -34.78697 -31.89315 -31.56613 -30.22504 -28.69436 -27.32772 -23.83763 -23.58918 -22.76283 -20.73523 -20.35016 -19.64202 -18.76829 -18.47893 -17.72086 -17.30782 -17.09636 -17.04826 -16.79971 -16.53400 -15.99274 -15.80552 -15.64316 -15.18626 -15.02800 -14.29218 -14.05826 -13.92168 -13.71002 -13.43393 -13.41642 -13.35650 -13.28585 -13.16029 -13.10835 -13.06130 -13.03039 -13.01124 -12.78084 -12.59023 -12.35176 -12.19316 -11.93754 -11.53263 -11.34727 -11.13935 -10.52685 -10.33237 -9.83281 -9.54377 -8.72355 -6.43674 -0.66434 -0.45186 0.42471 0.86067 1.38671 1.46876 1.51332 1.74244 2.18219 2.22721 2.57270 2.81010 2.94173 3.31893 3.48048 3.54186 3.71707 4.09523 4.15718 4.24775 4.32832 4.45952 4.47785 4.53481 4.63225 4.87269 4.92426 4.93170 5.01514 5.08064 5.16433 5.22465 5.42950 5.58507 5.91262 5.96126 6.08813 6.11733 6.16481 6.54620 6.81485 6.86424 8.25249 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012690 B = 0.002749 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.859318 B =10183.628492 C =11286.483238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.627 3.373 3 O -1.001 7.001 4 O -1.000 7.000 5 N -1.118 6.118 6 C 0.105 3.895 7 C 0.101 3.899 8 N -1.103 6.103 9 S 2.724 3.276 10 O -0.987 6.987 11 O -0.993 6.993 12 C -0.638 4.638 13 C -0.147 4.147 14 C -0.123 4.123 15 C -0.142 4.142 16 C 0.062 3.938 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.040 3.960 20 N -0.820 5.820 21 Si 0.981 3.019 22 H -0.264 1.264 23 H -0.266 1.266 24 H -0.260 1.260 25 C -0.142 4.142 26 H 0.148 0.852 27 H 0.145 0.855 28 H 0.150 0.850 29 H 0.425 0.575 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.431 0.569 35 H 0.133 0.867 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.291 0.709 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 4.754 -13.802 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.723 3.277 3 O -0.991 6.991 4 O -0.990 6.990 5 N -0.879 5.879 6 C -0.023 4.023 7 C -0.027 4.027 8 N -0.867 5.867 9 S 2.815 3.185 10 O -0.977 6.977 11 O -0.983 6.983 12 C -0.726 4.726 13 C -0.168 4.168 14 C -0.142 4.142 15 C -0.161 4.161 16 C 0.059 3.941 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.176 4.176 20 N -0.445 5.445 21 Si 0.801 3.199 22 H -0.189 1.189 23 H -0.190 1.190 24 H -0.183 1.183 25 C -0.163 4.163 26 H 0.166 0.834 27 H 0.163 0.837 28 H 0.168 0.832 29 H 0.261 0.739 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.103 0.897 34 H 0.268 0.732 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.864 4.473 -14.655 15.803 hybrid contribution -1.201 0.352 1.889 2.266 sum -5.065 4.825 -12.766 14.558 Atomic orbital electron populations 1.30337 1.23086 1.13828 1.13430 1.04109 0.79167 0.72137 0.72270 1.93573 1.80089 1.39403 1.86067 1.93569 1.79223 1.62608 1.63598 1.55306 1.75172 1.20981 1.36452 1.21573 1.01047 0.82140 0.97516 1.21585 1.01247 0.81428 0.98438 1.55030 1.44686 1.25163 1.61779 1.00670 0.72670 0.72212 0.72902 1.93506 1.36656 1.86594 1.80914 1.93511 1.78076 1.39834 1.86890 1.30240 1.06836 1.13612 1.21952 1.20473 1.00094 0.97534 0.98691 1.21138 0.98498 0.99989 0.94541 1.21645 0.94853 1.00126 0.99524 1.18035 0.92290 0.92030 0.91747 1.19862 1.19868 1.00348 1.12593 0.90387 1.26684 0.95578 0.94127 1.01234 1.69807 1.37429 1.03172 1.34126 0.85204 0.78247 0.79367 0.77037 1.18905 1.19011 1.18338 1.20864 0.99050 1.02387 0.94029 0.83365 0.83708 0.83177 0.73912 0.88914 0.87564 0.89989 0.89741 0.73157 0.84942 0.85708 0.87073 0.89781 0.86997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.06 10.89 113.37 1.23 -1.83 16 2 S 2.63 36.48 6.10 -56.49 -0.34 36.13 16 3 O -1.00 -22.03 18.08 -127.65 -2.31 -24.34 16 4 O -1.00 -21.99 17.50 -127.65 -2.23 -24.23 16 5 N -1.12 -14.18 5.89 -187.49 -1.10 -15.28 16 6 C 0.11 1.34 6.27 86.38 0.54 1.88 16 7 C 0.10 1.92 6.36 86.38 0.55 2.47 16 8 N -1.10 -24.82 6.00 -187.50 -1.12 -25.95 16 9 S 2.72 90.71 5.73 -56.49 -0.32 90.39 16 10 O -0.99 -36.30 16.75 -128.00 -2.14 -38.44 16 11 O -0.99 -38.23 17.26 -128.00 -2.21 -40.44 16 12 C -0.64 -25.69 5.94 22.22 0.13 -25.56 16 13 C -0.15 -5.81 9.53 22.46 0.21 -5.60 16 14 C -0.12 -5.17 10.02 22.22 0.22 -4.94 16 15 C -0.14 -6.91 8.70 22.73 0.20 -6.71 16 16 C 0.06 3.17 5.58 -21.29 -0.12 3.05 16 17 C -0.50 -25.43 9.05 23.46 0.21 -25.22 16 18 H 0.08 3.89 7.91 -2.91 -0.02 3.87 16 19 C 0.04 1.87 5.14 85.25 0.44 2.31 16 20 N -0.82 -39.60 10.95 21.82 0.24 -39.37 16 21 Si 0.98 36.00 29.60 68.60 2.03 38.03 16 22 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 23 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.14 -6.58 9.26 22.73 0.21 -6.37 16 26 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.14 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.15 0.19 8.14 -2.39 -0.02 0.17 16 29 H 0.43 4.91 8.62 -96.75 -0.83 4.08 16 30 H 0.09 1.16 7.69 -2.39 -0.02 1.14 16 31 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.08 1.71 7.75 -2.39 -0.02 1.69 16 34 H 0.43 7.04 8.65 -96.74 -0.84 6.20 16 35 H 0.13 4.49 7.61 -2.91 -0.02 4.47 16 36 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 37 H 0.11 5.62 6.15 -2.92 -0.02 5.60 16 38 H 0.29 12.65 8.30 -92.71 -0.77 11.88 16 39 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 Total: -1.00 -78.43 360.96 -6.25 -84.68 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.56 Total: 25.35 kcal Atomic # 6 Polarization: -70.37 SS G_CDS: 3.83 Total: -66.53 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -1.99 Total: -80.60 kcal Atomic # 8 Polarization: -118.55 SS G_CDS: -8.89 Total: -127.45 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: 127.19 SS G_CDS: -0.67 Total: 126.52 kcal Total: -78.43 -6.25 -84.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619475073.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.026 kcal (2) G-P(sol) polarization free energy of solvation -78.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds