Wall clock time and date at job start Wed Apr 1 2020 05:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99568 * 2 1 4 4 H 1.48498 * 109.47222 * 270.00190 * 3 2 1 5 5 H 1.48499 * 109.47448 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47261 * 150.00117 * 3 2 1 7 7 C 1.38696 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99900 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99700 * 180.02562 * 7 2 1 10 10 C 1.35521 * 117.00037 * 185.05369 * 9 7 2 11 11 C 1.38840 * 120.15883 * 354.39249 * 10 9 7 12 12 C 1.38020 * 120.06866 * 180.27712 * 11 10 9 13 13 C 1.38568 * 120.40457 * 359.73953 * 12 11 10 14 14 C 1.37829 * 120.32655 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.91415 * 0.02562 * 14 13 12 16 16 C 1.47533 * 120.19809 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00280 * 179.97438 * 16 15 14 18 18 N 1.34779 * 119.99843 * 0.02562 * 16 15 14 19 19 S 1.65598 * 120.00169 * 179.97438 * 18 16 15 20 20 O 1.42101 * 106.40356 * 311.46110 * 19 18 16 21 21 O 1.42104 * 106.40253 * 178.54142 * 19 18 16 22 22 C 1.76205 * 107.21568 * 65.00393 * 19 18 16 23 23 C 1.38228 * 119.61233 * 269.97738 * 22 19 18 24 24 C 1.38630 * 119.15743 * 179.79348 * 23 22 19 25 25 C 1.38675 * 118.42037 * 0.47066 * 24 23 22 26 26 C 1.38178 * 119.16336 * 359.50608 * 25 24 23 27 27 N 1.31852 * 119.61965 * 90.00031 * 22 19 18 28 28 H 0.97000 * 120.00708 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96647 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.79860 * 179.76293 * 12 11 10 31 31 H 1.08006 * 119.83839 * 180.02562 * 13 12 11 32 32 H 1.08002 * 120.04459 * 180.02562 * 14 13 12 33 33 H 0.97004 * 119.99845 * 359.97438 * 18 16 15 34 34 H 1.07999 * 120.42707 * 359.97438 * 23 22 19 35 35 H 1.07994 * 120.79154 * 180.23062 * 24 23 22 36 36 H 1.07998 * 120.42236 * 179.78547 * 25 24 23 37 37 H 1.07996 * 119.62340 * 180.25157 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3568 -1.2010 0.0000 10 6 3.9722 -2.4037 -0.1070 11 6 3.2245 -3.5735 -0.0937 12 6 3.8536 -4.7976 -0.1970 13 6 5.2320 -4.8695 -0.3198 14 6 5.9898 -3.7185 -0.3407 15 6 5.3671 -2.4726 -0.2371 16 6 6.1723 -1.2365 -0.2582 17 8 5.6265 -0.1538 -0.1683 18 7 7.5129 -1.3075 -0.3783 19 16 8.4166 0.0799 -0.4026 20 8 7.7945 0.9477 -1.3402 21 8 9.7744 -0.3274 -0.5025 22 6 8.2413 0.8442 1.1753 23 6 7.2217 1.7539 1.3841 24 6 7.0899 2.3464 2.6305 25 6 7.9986 2.0076 3.6218 26 6 8.9919 1.0895 3.3394 27 7 9.0845 0.5422 2.1430 28 1 -0.4851 0.8400 0.0004 29 1 2.1499 -3.5257 0.0024 30 1 3.2681 -5.7049 -0.1824 31 1 5.7148 -5.8323 -0.4004 32 1 7.0638 -3.7798 -0.4370 33 1 7.9483 -2.1713 -0.4504 34 1 6.5347 1.9979 0.5874 35 1 6.3007 3.0578 2.8238 36 1 7.9281 2.4523 4.6034 37 1 9.7010 0.8173 4.1071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734968672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:51 Heat of formation + Delta-G solvation = -57.906460 kcal Electronic energy + Delta-G solvation = -28346.528580 eV Core-core repulsion = 24182.705713 eV Total energy + Delta-G solvation = -4163.822867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.27123 -40.15072 -38.66076 -37.25685 -36.71981 -35.98126 -34.23999 -32.78010 -32.61831 -31.70563 -30.70258 -29.38578 -25.53460 -24.34490 -24.02115 -23.83231 -21.81561 -20.95593 -19.88049 -18.71165 -18.29009 -18.05192 -17.30155 -16.87182 -16.57337 -16.26651 -15.30258 -15.19138 -14.88845 -14.69470 -14.65300 -14.36580 -14.24909 -13.90791 -13.76674 -13.44431 -13.35658 -12.67957 -12.55782 -12.43380 -12.31140 -12.17888 -12.04641 -11.61224 -11.48106 -11.46441 -11.00338 -10.85265 -10.66446 -10.24037 -10.21740 -10.00787 -9.80214 -9.69306 -9.44980 -9.03310 -8.59855 -7.66893 -6.62066 -4.27232 0.04822 0.47001 1.01373 1.25989 2.03585 2.59994 2.96778 3.18984 3.28920 3.30622 3.48881 3.61836 3.94769 4.19829 4.29548 4.52547 4.53812 4.60301 4.73747 4.78674 4.93739 4.95435 5.00587 5.12599 5.24893 5.47862 5.49096 5.68107 5.73925 5.85491 5.87667 6.19228 6.30282 6.36039 6.58700 6.74643 6.93141 7.01824 7.31429 7.38740 7.54248 7.78238 7.98501 8.71776 9.31825 10.42431 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.005177 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.410867 B = 5407.202019 C = 7071.106234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.240 1.240 7 C -0.396 4.396 8 H 0.111 0.889 9 O -0.163 6.163 10 C 0.204 3.796 11 C -0.223 4.223 12 C -0.044 4.044 13 C -0.218 4.218 14 C -0.034 4.034 15 C -0.236 4.236 16 C 0.578 3.422 17 O -0.479 6.479 18 N -1.051 6.051 19 S 2.694 3.306 20 O -0.921 6.921 21 O -0.933 6.933 22 C -0.449 4.449 23 C -0.054 4.054 24 C -0.093 4.093 25 C -0.115 4.115 26 C 0.072 3.928 27 N -0.393 5.393 28 H 0.284 0.716 29 H 0.141 0.859 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.431 0.569 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.272 -1.823 5.399 15.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.134 4.134 3 Si 0.722 3.278 4 H -0.194 1.194 5 H -0.211 1.211 6 H -0.163 1.163 7 C -0.470 4.470 8 H 0.128 0.872 9 O -0.062 6.062 10 C 0.145 3.855 11 C -0.242 4.242 12 C -0.063 4.063 13 C -0.237 4.237 14 C -0.053 4.053 15 C -0.243 4.243 16 C 0.371 3.629 17 O -0.352 6.352 18 N -0.820 5.820 19 S 2.781 3.219 20 O -0.911 6.911 21 O -0.923 6.923 22 C -0.668 4.668 23 C -0.076 4.076 24 C -0.120 4.120 25 C -0.135 4.135 26 C -0.090 4.090 27 N -0.103 5.103 28 H 0.094 0.906 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.268 0.732 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.162 0.838 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 14.818 -0.898 4.606 15.543 hybrid contribution -0.690 0.773 0.980 1.426 sum 14.128 -0.125 5.586 15.193 Atomic orbital electron populations 1.69625 1.05828 1.29207 1.45032 1.24518 0.94997 0.99368 0.94469 0.86246 0.81065 0.80467 0.80058 1.19403 1.21071 1.16277 1.20942 0.76824 0.96915 1.52363 0.87194 1.83731 1.22441 1.25131 1.74917 1.18966 0.90035 0.85907 0.90543 1.21303 1.01475 0.91514 1.09944 1.21035 0.94410 0.96893 0.93913 1.20577 0.93995 0.97419 1.11703 1.20807 0.98423 0.91152 0.94935 1.18554 0.91004 0.92054 1.22664 1.18209 0.79749 0.90745 0.74218 1.90972 1.69658 1.28867 1.45675 1.54938 1.17981 1.27276 1.81791 1.02454 0.72941 0.73164 0.73315 1.93679 1.76624 1.64533 1.56259 1.93618 1.31402 1.81553 1.85723 1.33195 1.01884 1.11234 1.20526 1.22247 0.94540 0.91603 0.99163 1.21816 0.98564 0.98924 0.92736 1.22486 0.94382 0.96226 1.00367 1.23025 0.97598 0.94217 0.94147 1.67739 1.21476 1.21182 0.99902 0.90596 0.84149 0.86518 0.86574 0.86409 0.73172 0.81868 0.83502 0.83814 0.81560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.85 13.96 55.48 0.77 -23.08 16 2 C 0.07 1.99 5.49 -17.52 -0.10 1.89 16 3 Si 0.90 21.70 28.62 -169.99 -4.86 16.84 16 4 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.24 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.40 -10.62 9.95 30.90 0.31 -10.31 16 8 H 0.11 2.94 5.44 -52.49 -0.29 2.65 16 9 O -0.16 -4.15 6.67 -21.06 -0.14 -4.29 16 10 C 0.20 4.46 6.66 -38.60 -0.26 4.20 16 11 C -0.22 -4.33 9.16 -39.44 -0.36 -4.69 16 12 C -0.04 -0.68 10.03 -39.54 -0.40 -1.08 16 13 C -0.22 -3.06 10.02 -39.61 -0.40 -3.46 16 14 C -0.03 -0.50 9.54 -39.20 -0.37 -0.88 16 15 C -0.24 -4.42 5.89 -104.81 -0.62 -5.04 16 16 C 0.58 10.88 7.60 -12.47 -0.09 10.78 16 17 O -0.48 -10.63 12.33 -24.05 -0.30 -10.92 16 18 N -1.05 -15.55 5.65 30.46 0.17 -15.38 16 19 S 2.69 43.29 5.46 -107.50 -0.59 42.71 16 20 O -0.92 -17.36 16.21 -64.61 -1.05 -18.41 16 21 O -0.93 -15.42 17.85 -57.17 -1.02 -16.44 16 22 C -0.45 -7.12 6.64 -17.55 -0.12 -7.24 16 23 C -0.05 -0.85 8.54 -39.44 -0.34 -1.19 16 24 C -0.09 -1.16 10.18 -39.28 -0.40 -1.56 16 25 C -0.11 -1.17 10.11 -39.44 -0.40 -1.57 16 26 C 0.07 0.81 11.18 -17.55 -0.20 0.62 16 27 N -0.39 -5.77 10.11 -12.45 -0.13 -5.90 16 28 H 0.28 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.14 2.83 5.64 -52.49 -0.30 2.53 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.12 1.27 8.06 -52.48 -0.42 0.85 16 32 H 0.12 1.23 6.40 -52.49 -0.34 0.90 16 33 H 0.43 4.63 6.86 -34.47 -0.24 4.40 16 34 H 0.16 2.75 6.83 -52.49 -0.36 2.39 16 35 H 0.15 1.47 8.06 -52.49 -0.42 1.04 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 338.93 15.07 5.11 5.11 Total: -1.00 -34.49 338.93 -8.52 -43.01 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -2.76 Total: 6.25 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -3.73 Total: -19.51 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.82 Total: -44.35 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: -2.50 Total: -50.06 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.86 Total: 16.84 kcal Atomic # 16 Polarization: 43.29 SS G_CDS: -0.59 Total: 42.71 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.49 -8.52 -43.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734968672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.892 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds