Wall clock time and date at job start Wed Apr 1 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99568 * 2 1 4 4 H 1.48498 * 109.47222 * 270.00190 * 3 2 1 5 5 H 1.48499 * 109.47448 * 30.00121 * 3 2 1 6 6 H 1.48503 * 109.47261 * 150.00117 * 3 2 1 7 7 C 1.38696 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99900 * 359.97438 * 7 2 1 9 9 O 1.34813 * 119.99700 * 180.02562 * 7 2 1 10 10 C 1.35521 * 117.00037 * 185.05369 * 9 7 2 11 11 C 1.38840 * 120.15883 * 354.39249 * 10 9 7 12 12 C 1.38020 * 120.06866 * 180.27712 * 11 10 9 13 13 C 1.38568 * 120.40457 * 359.73953 * 12 11 10 14 14 C 1.37829 * 120.32655 * 359.97438 * 13 12 11 15 15 C 1.39665 * 119.91415 * 0.02562 * 14 13 12 16 16 C 1.47533 * 120.19809 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00280 * 179.97438 * 16 15 14 18 18 N 1.34779 * 119.99843 * 0.02562 * 16 15 14 19 19 S 1.65598 * 120.00169 * 179.97438 * 18 16 15 20 20 O 1.42101 * 106.40356 * 311.46110 * 19 18 16 21 21 O 1.42104 * 106.40253 * 178.54142 * 19 18 16 22 22 C 1.76205 * 107.21568 * 65.00393 * 19 18 16 23 23 C 1.38228 * 119.61233 * 269.97738 * 22 19 18 24 24 C 1.38630 * 119.15743 * 179.79348 * 23 22 19 25 25 C 1.38675 * 118.42037 * 0.47066 * 24 23 22 26 26 C 1.38178 * 119.16336 * 359.50608 * 25 24 23 27 27 N 1.31852 * 119.61965 * 90.00031 * 22 19 18 28 28 H 0.97000 * 120.00708 * 359.97438 * 1 2 3 29 29 H 1.07997 * 119.96647 * 359.97438 * 11 10 9 30 30 H 1.08000 * 119.79860 * 179.76293 * 12 11 10 31 31 H 1.08006 * 119.83839 * 180.02562 * 13 12 11 32 32 H 1.08002 * 120.04459 * 180.02562 * 14 13 12 33 33 H 0.97004 * 119.99845 * 359.97438 * 18 16 15 34 34 H 1.07999 * 120.42707 * 359.97438 * 23 22 19 35 35 H 1.07994 * 120.79154 * 180.23062 * 24 23 22 36 36 H 1.07998 * 120.42236 * 179.78547 * 25 24 23 37 37 H 1.07996 * 119.62340 * 180.25157 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0087 -1.2011 -0.0005 8 1 1.4687 -2.1364 -0.0005 9 8 3.3568 -1.2010 0.0000 10 6 3.9722 -2.4037 -0.1070 11 6 3.2245 -3.5735 -0.0937 12 6 3.8536 -4.7976 -0.1970 13 6 5.2320 -4.8695 -0.3198 14 6 5.9898 -3.7185 -0.3407 15 6 5.3671 -2.4726 -0.2371 16 6 6.1723 -1.2365 -0.2582 17 8 5.6265 -0.1538 -0.1683 18 7 7.5129 -1.3075 -0.3783 19 16 8.4166 0.0799 -0.4026 20 8 7.7945 0.9477 -1.3402 21 8 9.7744 -0.3274 -0.5025 22 6 8.2413 0.8442 1.1753 23 6 7.2217 1.7539 1.3841 24 6 7.0899 2.3464 2.6305 25 6 7.9986 2.0076 3.6218 26 6 8.9919 1.0895 3.3394 27 7 9.0845 0.5422 2.1430 28 1 -0.4851 0.8400 0.0004 29 1 2.1499 -3.5257 0.0024 30 1 3.2681 -5.7049 -0.1824 31 1 5.7148 -5.8323 -0.4004 32 1 7.0638 -3.7798 -0.4370 33 1 7.9483 -2.1713 -0.4504 34 1 6.5347 1.9979 0.5874 35 1 6.3007 3.0578 2.8238 36 1 7.9281 2.4523 4.6034 37 1 9.7010 0.8173 4.1071 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734968672.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:50 Heat of formation + Delta-G solvation = -84.306753 kcal Electronic energy + Delta-G solvation = -28347.673383 eV Core-core repulsion = 24182.705713 eV Total energy + Delta-G solvation = -4164.967670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69997 -41.21621 -40.23307 -38.61850 -38.21740 -37.33246 -35.68246 -34.53978 -33.75831 -32.69526 -32.11230 -30.85652 -27.37981 -25.48757 -25.32323 -24.80438 -23.33489 -22.36819 -21.16216 -20.01620 -19.91690 -19.53207 -18.67602 -18.32296 -17.69423 -17.26149 -16.78353 -16.58829 -16.33277 -16.11523 -15.95786 -15.75916 -15.51812 -15.46009 -15.27146 -14.84744 -14.36886 -14.29559 -14.11553 -13.86086 -13.61301 -13.55222 -13.40645 -13.18858 -12.90031 -12.65079 -12.59068 -12.44397 -12.04240 -12.02568 -11.67041 -11.18407 -11.15285 -10.98226 -10.82234 -10.67857 -9.98441 -9.21356 -8.59043 -6.28441 -1.18028 -0.57815 -0.15952 0.04129 0.61652 1.24261 1.31758 1.32967 1.55118 1.57655 2.16503 2.26781 2.50745 2.71979 2.83314 2.92397 3.09761 3.30331 3.57590 3.76530 3.85449 3.87831 3.93244 3.98360 4.10798 4.22798 4.43822 4.49199 4.52603 4.73887 4.79357 4.94187 4.99658 5.23067 5.41184 5.44126 5.50100 5.64885 5.71946 5.82387 6.11109 6.40378 6.52794 6.77143 7.51984 8.50704 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009766 B = 0.005177 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.410867 B = 5407.202019 C = 7071.106234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.028 3.972 3 Si 0.944 3.056 4 H -0.281 1.281 5 H -0.266 1.266 6 H -0.251 1.251 7 C -0.401 4.401 8 H 0.095 0.905 9 O -0.205 6.205 10 C 0.171 3.829 11 C -0.248 4.248 12 C -0.032 4.032 13 C -0.187 4.187 14 C -0.028 4.028 15 C -0.240 4.240 16 C 0.580 3.420 17 O -0.515 6.515 18 N -1.033 6.033 19 S 2.707 3.293 20 O -0.958 6.958 21 O -0.938 6.938 22 C -0.468 4.468 23 C -0.082 4.082 24 C -0.106 4.106 25 C -0.092 4.092 26 C 0.071 3.929 27 N -0.414 5.414 28 H 0.286 0.714 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.449 0.551 34 H 0.137 0.863 35 H 0.167 0.833 36 H 0.193 0.807 37 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.845 -4.251 7.242 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.173 4.173 3 Si 0.768 3.232 4 H -0.206 1.206 5 H -0.190 1.190 6 H -0.175 1.175 7 C -0.477 4.477 8 H 0.112 0.888 9 O -0.108 6.108 10 C 0.117 3.883 11 C -0.267 4.267 12 C -0.050 4.050 13 C -0.206 4.206 14 C -0.046 4.046 15 C -0.247 4.247 16 C 0.372 3.628 17 O -0.389 6.389 18 N -0.803 5.803 19 S 2.797 3.203 20 O -0.947 6.947 21 O -0.928 6.928 22 C -0.688 4.688 23 C -0.104 4.104 24 C -0.132 4.132 25 C -0.112 4.112 26 C -0.092 4.092 27 N -0.125 5.125 28 H 0.096 0.904 29 H 0.138 0.862 30 H 0.172 0.828 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.290 0.710 34 H 0.155 0.845 35 H 0.184 0.816 36 H 0.211 0.789 37 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 18.453 -3.406 6.410 19.830 hybrid contribution -1.396 1.151 0.488 1.874 sum 17.057 -2.256 6.899 18.537 Atomic orbital electron populations 1.69674 1.06504 1.29636 1.48882 1.25036 0.95600 1.01427 0.95235 0.85573 0.79786 0.78671 0.79194 1.20647 1.19026 1.17475 1.20867 0.78069 0.96355 1.52368 0.88765 1.83724 1.21105 1.26891 1.79127 1.19679 0.91638 0.85904 0.91048 1.21354 1.00793 0.92713 1.11883 1.21528 0.95831 0.96411 0.91236 1.21266 0.93086 0.99373 1.06835 1.21444 1.01151 0.89362 0.92670 1.18956 0.89917 0.93897 1.21936 1.18358 0.80727 0.90331 0.73422 1.90978 1.70759 1.30279 1.46914 1.54589 1.16461 1.28302 1.80918 1.01794 0.72384 0.72814 0.73295 1.93634 1.77234 1.65512 1.58366 1.93599 1.31428 1.81648 1.86164 1.32736 1.03074 1.12312 1.20641 1.22211 0.94788 0.93170 1.00243 1.22193 0.99841 0.99117 0.92053 1.23027 0.92161 0.94465 1.01510 1.23863 0.98261 0.93381 0.93656 1.67743 1.21447 1.22345 1.00958 0.90423 0.86247 0.82816 0.81269 0.81328 0.70951 0.84509 0.81555 0.78938 0.77312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.46 13.96 21.62 0.30 -53.16 16 2 C 0.03 1.62 5.49 84.85 0.47 2.09 16 3 Si 0.94 47.73 28.62 68.60 1.96 49.70 16 4 H -0.28 -14.42 7.11 99.48 0.71 -13.71 16 5 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.25 -12.97 7.11 99.48 0.71 -12.26 16 7 C -0.40 -23.09 9.95 67.93 0.68 -22.42 16 8 H 0.09 5.49 5.44 -2.91 -0.02 5.48 16 9 O -0.20 -11.09 6.67 0.84 0.01 -11.08 16 10 C 0.17 7.66 6.66 22.91 0.15 7.81 16 11 C -0.25 -9.67 9.16 22.36 0.20 -9.47 16 12 C -0.03 -0.87 10.03 22.30 0.22 -0.65 16 13 C -0.19 -4.10 10.02 22.25 0.22 -3.87 16 14 C -0.03 -0.68 9.54 22.52 0.21 -0.47 16 15 C -0.24 -8.72 5.89 -19.99 -0.12 -8.83 16 16 C 0.58 21.78 7.60 86.69 0.66 22.44 16 17 O -0.51 -23.88 12.33 24.05 0.30 -23.58 16 18 N -1.03 -29.31 5.65 -175.81 -0.99 -30.31 16 19 S 2.71 87.27 5.46 -56.49 -0.31 86.97 16 20 O -0.96 -37.71 16.21 -120.89 -1.96 -39.67 16 21 O -0.94 -30.17 17.85 -128.00 -2.29 -32.46 16 22 C -0.47 -14.78 6.64 84.69 0.56 -14.22 16 23 C -0.08 -2.63 8.54 22.36 0.19 -2.44 16 24 C -0.11 -2.50 10.18 22.47 0.23 -2.27 16 25 C -0.09 -1.53 10.11 22.36 0.23 -1.31 16 26 C 0.07 1.35 11.18 84.67 0.95 2.29 16 27 N -0.41 -11.39 10.11 -193.31 -1.95 -13.35 16 28 H 0.29 15.56 8.31 -92.71 -0.77 14.79 16 29 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 30 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 32 H 0.17 2.39 6.40 -2.91 -0.02 2.37 16 33 H 0.45 8.28 6.86 -96.74 -0.66 7.62 16 34 H 0.14 5.04 6.83 -2.91 -0.02 5.02 16 35 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.19 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.21 2.02 8.06 -2.91 -0.02 2.00 16 Total: -1.00 -84.27 338.93 0.42 -83.85 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.50 Total: 14.41 kcal Atomic # 6 Polarization: -36.17 SS G_CDS: 4.86 Total: -31.31 kcal Atomic # 7 Polarization: -94.17 SS G_CDS: -2.65 Total: -96.81 kcal Atomic # 8 Polarization: -102.85 SS G_CDS: -3.94 Total: -106.79 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 1.96 Total: 49.70 kcal Atomic # 16 Polarization: 87.27 SS G_CDS: -0.31 Total: 86.97 kcal Total: -84.27 0.42 -83.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734968672.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.461 kcal (2) G-P(sol) polarization free energy of solvation -84.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds