Wall clock time and date at job start Wed Apr 1 2020 05:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48504 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47638 * 300.00503 * 3 2 1 6 6 H 1.48502 * 109.47341 * 60.00679 * 3 2 1 7 7 C 1.37877 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47433 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.34709 * 116.99971 * 180.02562 * 11 10 9 13 13 O 1.21471 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.47723 * 120.00179 * 179.97438 * 12 11 10 15 15 C 1.39633 * 120.15316 * 179.97438 * 14 12 11 16 16 C 1.37938 * 119.84852 * 180.30600 * 15 14 12 17 17 C 1.38372 * 120.14963 * 359.44003 * 16 15 14 18 18 C 1.50708 * 119.84796 * 180.28044 * 17 16 15 19 19 S 1.81398 * 109.47294 * 270.28026 * 18 17 16 20 20 O 1.42100 * 108.57738 * 294.48544 * 19 18 17 21 21 O 1.42096 * 108.57873 * 65.51382 * 19 18 17 22 22 C 1.81402 * 101.92042 * 180.02562 * 19 18 17 23 23 F 1.39899 * 109.46994 * 299.99739 * 22 19 18 24 24 F 1.39898 * 109.46894 * 60.00034 * 22 19 18 25 25 C 1.38363 * 120.30454 * 0.56443 * 17 16 15 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 17 16 27 27 H 0.97002 * 120.00456 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46644 * 60.00286 * 9 7 2 29 29 H 1.09003 * 109.46850 * 300.00760 * 9 7 2 30 30 H 1.09004 * 109.46780 * 60.00035 * 10 9 7 31 31 H 1.09004 * 109.47030 * 300.00375 * 10 9 7 32 32 H 1.08002 * 120.07109 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.92553 * 179.70097 * 16 15 14 34 34 H 1.09000 * 109.46665 * 30.28514 * 18 17 16 35 35 H 1.08996 * 109.46685 * 150.27641 * 18 17 16 36 36 H 1.08999 * 109.47162 * 179.97438 * 22 19 18 37 37 H 1.07996 * 119.93057 * 179.69874 * 25 17 16 38 38 H 1.08004 * 120.07515 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 -0.0011 12 6 2.2532 -6.0492 -0.0007 13 8 3.4662 -5.9857 0.0007 14 6 1.5827 -7.3655 -0.0007 15 6 2.3401 -8.5385 -0.0008 16 6 1.7075 -9.7643 -0.0072 17 6 0.3255 -9.8331 -0.0018 18 6 -0.3587 -11.1759 -0.0024 19 16 -0.6326 -11.7143 -1.7129 20 8 -1.5542 -10.8231 -2.3259 21 8 0.6303 -11.9360 -2.3255 22 6 -1.4497 -13.3163 -1.4753 23 9 -0.6030 -14.1700 -0.7600 24 9 -2.6382 -13.1321 -0.7607 25 6 -0.4313 -8.6747 -0.0018 26 6 0.1885 -7.4423 -0.0012 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8895 31 1 2.8721 -3.6042 -0.8905 32 1 3.4189 -8.4862 -0.0004 33 1 2.2921 -10.6723 -0.0121 34 1 0.2692 -11.9038 0.5115 35 1 -1.3167 -11.0958 0.5111 36 1 -1.6746 -13.7571 -2.4465 37 1 -1.5095 -8.7355 -0.0025 38 1 -0.4034 -6.5389 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759379145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:13 Heat of formation + Delta-G solvation = -220.585429 kcal Electronic energy + Delta-G solvation = -26921.718060 eV Core-core repulsion = 22300.151717 eV Total energy + Delta-G solvation = -4621.566343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -49.98791 -48.13082 -40.41989 -39.11108 -37.93066 -36.99624 -36.16609 -33.74345 -33.32277 -31.39739 -30.35020 -28.73885 -28.11835 -25.20445 -23.38188 -23.05349 -21.16358 -20.59348 -20.20471 -18.97972 -18.80263 -18.41775 -17.96210 -17.04925 -16.78709 -16.55061 -16.10689 -15.98794 -15.83276 -15.27471 -15.05607 -14.96069 -14.70579 -14.41133 -14.39196 -13.87744 -13.65704 -13.50858 -13.34515 -13.09718 -12.99003 -12.91541 -12.89662 -12.38395 -12.23129 -11.84954 -11.42917 -11.31068 -11.24344 -11.05865 -10.80103 -10.73005 -10.35421 -9.70240 -9.67076 -9.34223 -9.31042 -9.20844 -8.46554 -6.12394 -4.16720 -1.40215 0.42532 1.03271 1.37661 2.45731 2.61213 2.77485 3.01819 3.09643 3.26639 3.34315 3.34911 3.39280 3.54464 3.57310 3.66585 4.06360 4.37391 4.57412 4.59475 4.74596 4.91624 5.03256 5.17835 5.24433 5.44682 5.67016 5.87980 5.95821 6.05061 6.05636 6.11778 6.45692 6.59724 6.86943 7.52626 7.59264 7.83754 8.09360 8.21826 8.88959 9.47884 10.99114 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.001812 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.989392 B =15444.584961 C =16029.211372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.024 3.976 10 C 0.075 3.925 11 O -0.350 6.350 12 C 0.498 3.502 13 O -0.510 6.510 14 C -0.099 4.099 15 C -0.057 4.057 16 C -0.111 4.111 17 C -0.077 4.077 18 C -0.545 4.545 19 S 2.383 3.617 20 O -0.880 6.880 21 O -0.883 6.883 22 C -0.221 4.221 23 F -0.169 7.169 24 F -0.168 7.168 25 C -0.110 4.110 26 C -0.059 4.059 27 H 0.263 0.737 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.156 0.844 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 -30.743 -0.611 31.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.003 3.997 11 O -0.266 6.266 12 C 0.342 3.658 13 O -0.400 6.400 14 C -0.101 4.101 15 C -0.076 4.076 16 C -0.130 4.130 17 C -0.079 4.079 18 C -0.675 4.675 19 S 2.556 3.444 20 O -0.877 6.877 21 O -0.880 6.880 22 C -0.354 4.354 23 F -0.150 7.150 24 F -0.149 7.149 25 C -0.129 4.129 26 C -0.077 4.077 27 H 0.073 0.927 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.174 0.826 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.038 -30.294 -1.399 30.594 hybrid contribution 0.152 0.245 0.762 0.815 sum -3.886 -30.049 -0.637 30.306 Atomic orbital electron populations 1.69977 1.06082 1.26917 1.49814 1.24985 0.94930 0.99418 0.94856 0.86412 0.80056 0.83120 0.77701 1.19584 1.20824 1.20837 1.21009 0.93238 0.90054 1.52128 0.92164 1.19186 0.94194 0.88967 0.98953 1.23716 0.96467 0.78339 1.01166 1.86567 1.41963 1.15628 1.82476 1.21057 0.85698 0.85574 0.73432 1.90805 1.14984 1.88340 1.45895 1.19506 0.94134 0.91244 1.05235 1.21317 1.01228 0.90297 0.94710 1.21085 0.93174 0.98536 1.00208 1.19016 0.93900 0.91453 1.03528 1.29105 1.11764 1.04824 1.21814 1.10518 0.76876 0.76613 0.80423 1.93707 1.64307 1.56720 1.73011 1.93694 1.38182 1.83026 1.73081 1.33370 0.86749 1.17361 0.97925 1.93079 1.69155 1.73064 1.79711 1.93084 1.46312 1.95805 1.79722 1.21193 1.00826 0.91251 0.99640 1.21660 0.93495 0.98883 0.93644 0.92738 0.95244 0.95289 0.92099 0.92081 0.83635 0.84114 0.82646 0.82554 0.82904 0.84018 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 10 C 0.08 1.66 5.41 37.16 0.20 1.86 16 11 O -0.35 -6.87 9.47 -40.52 -0.38 -7.25 16 12 C 0.50 8.78 7.90 34.61 0.27 9.06 16 13 O -0.51 -10.04 16.14 -19.24 -0.31 -10.35 16 14 C -0.10 -1.36 5.87 -104.98 -0.62 -1.98 16 15 C -0.06 -0.65 9.60 -39.17 -0.38 -1.03 16 16 C -0.11 -0.98 9.68 -39.64 -0.38 -1.36 16 17 C -0.08 -0.63 5.15 -104.52 -0.54 -1.16 16 18 C -0.55 -2.41 5.84 36.01 0.21 -2.20 16 19 S 2.38 14.19 4.94 -107.50 -0.53 13.66 16 20 O -0.88 -7.91 18.10 -57.83 -1.05 -8.95 16 21 O -0.88 -7.68 18.10 -57.83 -1.05 -8.73 16 22 C -0.22 -0.93 5.79 101.05 0.59 -0.34 16 23 F -0.17 -0.90 17.33 2.25 0.04 -0.86 16 24 F -0.17 -0.92 17.33 2.25 0.04 -0.88 16 25 C -0.11 -1.01 9.68 -39.64 -0.38 -1.40 16 26 C -0.06 -0.69 9.62 -39.17 -0.38 -1.07 16 27 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 32 H 0.15 1.57 7.65 -52.49 -0.40 1.17 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.16 0.27 8.08 -51.92 -0.42 -0.15 16 35 H 0.16 0.30 8.08 -51.93 -0.42 -0.12 16 36 H 0.15 0.20 8.14 -51.92 -0.42 -0.22 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.15 1.76 7.61 -52.48 -0.40 1.36 16 LS Contribution 364.29 15.07 5.49 5.49 Total: -1.00 -36.05 364.29 -8.14 -44.19 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: -4.14 Total: -4.68 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.97 Total: -12.53 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.39 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -2.79 Total: -35.27 kcal Atomic # 9 Polarization: -1.81 SS G_CDS: 0.08 Total: -1.74 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: 14.19 SS G_CDS: -0.53 Total: 13.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.05 -8.14 -44.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759379145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.398 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds