Wall clock time and date at job start Wed Apr 1 2020 05:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99719 * 2 1 4 4 H 1.48504 * 109.47399 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47638 * 300.00503 * 3 2 1 6 6 H 1.48502 * 109.47341 * 60.00679 * 3 2 1 7 7 C 1.37877 * 120.00256 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99760 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47433 * 180.02562 * 9 7 2 11 11 O 1.45196 * 109.47183 * 180.02562 * 10 9 7 12 12 C 1.34709 * 116.99971 * 180.02562 * 11 10 9 13 13 O 1.21471 * 120.00215 * 0.02562 * 12 11 10 14 14 C 1.47723 * 120.00179 * 179.97438 * 12 11 10 15 15 C 1.39633 * 120.15316 * 179.97438 * 14 12 11 16 16 C 1.37938 * 119.84852 * 180.30600 * 15 14 12 17 17 C 1.38372 * 120.14963 * 359.44003 * 16 15 14 18 18 C 1.50708 * 119.84796 * 180.28044 * 17 16 15 19 19 S 1.81398 * 109.47294 * 270.28026 * 18 17 16 20 20 O 1.42100 * 108.57738 * 294.48544 * 19 18 17 21 21 O 1.42096 * 108.57873 * 65.51382 * 19 18 17 22 22 C 1.81402 * 101.92042 * 180.02562 * 19 18 17 23 23 F 1.39899 * 109.46994 * 299.99739 * 22 19 18 24 24 F 1.39898 * 109.46894 * 60.00034 * 22 19 18 25 25 C 1.38363 * 120.30454 * 0.56443 * 17 16 15 26 26 C 1.37948 * 120.14806 * 359.71588 * 25 17 16 27 27 H 0.97002 * 120.00456 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46644 * 60.00286 * 9 7 2 29 29 H 1.09003 * 109.46850 * 300.00760 * 9 7 2 30 30 H 1.09004 * 109.46780 * 60.00035 * 10 9 7 31 31 H 1.09004 * 109.47030 * 300.00375 * 10 9 7 32 32 H 1.08002 * 120.07109 * 0.02562 * 15 14 12 33 33 H 1.07998 * 119.92553 * 179.70097 * 16 15 14 34 34 H 1.09000 * 109.46665 * 30.28514 * 18 17 16 35 35 H 1.08996 * 109.46685 * 150.27641 * 18 17 16 36 36 H 1.08999 * 109.47162 * 179.97438 * 22 19 18 37 37 H 1.07996 * 119.93057 * 179.69874 * 25 17 16 38 38 H 1.08004 * 120.07515 * 179.97438 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 -0.0011 12 6 2.2532 -6.0492 -0.0007 13 8 3.4662 -5.9857 0.0007 14 6 1.5827 -7.3655 -0.0007 15 6 2.3401 -8.5385 -0.0008 16 6 1.7075 -9.7643 -0.0072 17 6 0.3255 -9.8331 -0.0018 18 6 -0.3587 -11.1759 -0.0024 19 16 -0.6326 -11.7143 -1.7129 20 8 -1.5542 -10.8231 -2.3259 21 8 0.6303 -11.9360 -2.3255 22 6 -1.4497 -13.3163 -1.4753 23 9 -0.6030 -14.1700 -0.7600 24 9 -2.6382 -13.1321 -0.7607 25 6 -0.4313 -8.6747 -0.0018 26 6 0.1885 -7.4423 -0.0012 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 0.8895 31 1 2.8721 -3.6042 -0.8905 32 1 3.4189 -8.4862 -0.0004 33 1 2.2921 -10.6723 -0.0121 34 1 0.2692 -11.9038 0.5115 35 1 -1.3167 -11.0958 0.5111 36 1 -1.6746 -13.7571 -2.4465 37 1 -1.5095 -8.7355 -0.0025 38 1 -0.4034 -6.5389 -0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759379145.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:12 Heat of formation + Delta-G solvation = -244.584423 kcal Electronic energy + Delta-G solvation = -26922.758734 eV Core-core repulsion = 22300.151717 eV Total energy + Delta-G solvation = -4622.607017 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.36576 -48.50935 -41.68160 -40.14631 -38.47779 -37.73799 -37.53760 -35.47697 -34.44628 -32.42496 -32.09037 -29.46788 -28.58842 -27.07898 -24.56618 -23.87188 -22.92611 -21.86343 -20.68716 -19.41023 -19.32347 -19.15722 -18.79222 -18.44864 -17.95153 -17.58206 -17.42441 -17.04987 -16.61074 -16.46617 -16.13577 -15.62048 -15.42074 -15.34505 -15.20874 -14.76687 -14.65123 -14.43885 -14.35788 -14.02001 -13.85884 -13.78746 -13.54045 -13.46469 -13.21378 -13.13972 -12.99200 -12.64548 -12.59975 -12.43154 -12.17312 -11.94354 -11.69032 -11.56265 -11.52421 -11.38037 -10.62766 -10.13974 -10.02544 -8.28062 -6.41122 -1.87551 -0.48662 0.23545 0.95179 1.36643 1.40460 1.41359 1.53904 1.64063 2.08572 2.34814 2.39336 2.60547 2.80494 3.06422 3.09359 3.11697 3.22787 3.56265 3.63613 3.87016 3.98367 4.17484 4.19563 4.22157 4.36135 4.44645 4.65369 4.69895 4.93276 5.02357 5.15926 5.21881 5.28037 5.44932 5.47389 5.67183 5.72038 6.05178 6.60601 6.72618 7.28594 8.84738 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.027021 B = 0.001812 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.989392 B =15444.584961 C =16029.211372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.031 3.969 10 C 0.090 3.910 11 O -0.357 6.357 12 C 0.497 3.503 13 O -0.537 6.537 14 C -0.130 4.130 15 C -0.062 4.062 16 C -0.109 4.109 17 C -0.067 4.067 18 C -0.545 4.545 19 S 2.391 3.609 20 O -0.918 6.918 21 O -0.916 6.916 22 C -0.206 4.206 23 F -0.171 7.171 24 F -0.171 7.171 25 C -0.112 4.112 26 C -0.069 4.069 27 H 0.268 0.732 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.145 0.855 33 H 0.175 0.825 34 H 0.191 0.809 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.169 0.831 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 -33.093 -0.159 33.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.193 4.193 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.588 4.588 8 H 0.083 0.917 9 C -0.006 4.006 10 C 0.017 3.983 11 O -0.274 6.274 12 C 0.344 3.656 13 O -0.429 6.429 14 C -0.132 4.132 15 C -0.081 4.081 16 C -0.128 4.128 17 C -0.069 4.069 18 C -0.675 4.675 19 S 2.568 3.432 20 O -0.915 6.915 21 O -0.913 6.913 22 C -0.342 4.342 23 F -0.152 7.152 24 F -0.153 7.153 25 C -0.131 4.131 26 C -0.087 4.087 27 H 0.077 0.923 28 H 0.026 0.974 29 H 0.027 0.973 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.192 0.808 34 H 0.209 0.791 35 H 0.206 0.794 36 H 0.203 0.797 37 H 0.187 0.813 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.276 -32.643 -0.960 32.936 hybrid contribution 0.131 0.751 0.646 0.999 sum -4.146 -31.893 -0.314 32.162 Atomic orbital electron populations 1.70094 1.07768 1.28244 1.50380 1.25965 0.95873 1.03413 0.94089 0.85264 0.78876 0.78055 0.78029 1.18669 1.20069 1.19996 1.21394 0.93714 0.91193 1.52461 0.91702 1.18986 0.94314 0.90452 0.96837 1.23236 0.95190 0.78698 1.01171 1.86551 1.42082 1.15639 1.83101 1.21809 0.85607 0.86058 0.72150 1.90772 1.16051 1.88609 1.47487 1.19389 0.95052 0.89507 1.09232 1.21441 1.01310 0.90530 0.94778 1.21494 0.93931 0.98555 0.98785 1.19391 0.93851 0.92954 1.00699 1.29210 1.13945 1.03286 1.21033 1.10003 0.75832 0.76748 0.80664 1.93671 1.64939 1.58527 1.74398 1.93660 1.39554 1.83764 1.74362 1.33139 0.86014 1.15765 0.99301 1.93084 1.69289 1.72940 1.79912 1.93087 1.46517 1.95736 1.79958 1.21535 1.02366 0.90515 0.98698 1.21689 0.92720 1.00035 0.94281 0.92301 0.97406 0.97297 0.91959 0.92109 0.83689 0.80782 0.79123 0.79384 0.79668 0.81314 0.83845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.16 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.97 43.81 29.54 68.60 2.03 45.84 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 8 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C 0.09 4.13 5.41 71.98 0.39 4.52 16 11 O -0.36 -14.79 9.47 -56.19 -0.53 -15.32 16 12 C 0.50 18.40 7.90 70.33 0.56 18.96 16 13 O -0.54 -22.04 16.14 19.93 0.32 -21.72 16 14 C -0.13 -3.66 5.87 -20.10 -0.12 -3.78 16 15 C -0.06 -1.39 9.60 22.54 0.22 -1.18 16 16 C -0.11 -1.67 9.68 22.23 0.22 -1.45 16 17 C -0.07 -0.90 5.15 -19.80 -0.10 -1.01 16 18 C -0.54 -2.60 5.84 71.24 0.42 -2.18 16 19 S 2.39 22.22 4.94 -56.49 -0.28 21.94 16 20 O -0.92 -15.02 18.10 -127.37 -2.30 -17.32 16 21 O -0.92 -14.15 18.10 -127.37 -2.31 -16.45 16 22 C -0.21 -1.01 5.79 113.37 0.66 -0.35 16 23 F -0.17 -1.18 17.33 44.97 0.78 -0.40 16 24 F -0.17 -1.27 17.33 44.97 0.78 -0.49 16 25 C -0.11 -1.88 9.68 22.23 0.22 -1.67 16 26 C -0.07 -1.65 9.62 22.54 0.22 -1.43 16 27 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 31 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.15 3.15 7.65 -2.91 -0.02 3.13 16 33 H 0.17 1.44 8.06 -2.91 -0.02 1.42 16 34 H 0.19 -0.36 8.08 -2.39 -0.02 -0.38 16 35 H 0.19 -0.21 8.08 -2.39 -0.02 -0.23 16 36 H 0.19 -0.20 8.14 -2.39 -0.02 -0.22 16 37 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 3.54 7.61 -2.91 -0.02 3.52 16 Total: -1.00 -80.59 364.29 3.39 -77.20 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.10 Total: -0.04 kcal Atomic # 6 Polarization: -21.59 SS G_CDS: 3.52 Total: -18.07 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.28 Total: -55.16 kcal Atomic # 8 Polarization: -66.00 SS G_CDS: -4.82 Total: -70.82 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 1.56 Total: -0.89 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Atomic # 16 Polarization: 22.22 SS G_CDS: -0.28 Total: 21.94 kcal Total: -80.59 3.39 -77.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759379145.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.383 kcal (2) G-P(sol) polarization free energy of solvation -80.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -247.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -244.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds