Wall clock time and date at job start Wed Apr 1 2020 06:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47277 * 2 1 4 4 C 1.53006 * 109.46996 * 119.99982 * 2 1 3 5 5 N 1.46501 * 109.47055 * 65.35615 * 4 2 1 6 6 C 1.46498 * 120.00111 * 273.30397 * 5 4 2 7 7 C 1.50703 * 109.46808 * 274.18200 * 6 5 4 8 8 H 1.07996 * 120.00304 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99711 * 180.02562 * 7 6 5 10 10 N 1.31502 * 120.00149 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99564 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47219 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46630 * 120.00325 * 11 9 7 14 14 H 1.48500 * 109.47202 * 239.99781 * 11 9 7 15 15 S 1.65597 * 120.00085 * 93.30211 * 5 4 2 16 16 O 1.42105 * 106.39852 * 336.46044 * 15 5 4 17 17 O 1.42094 * 106.40461 * 203.53944 * 15 5 4 18 18 C 1.76203 * 107.21696 * 89.99920 * 15 5 4 19 19 C 1.33390 * 122.53847 * 269.97501 * 18 15 5 20 20 S 1.75880 * 109.59367 * 179.75899 * 19 18 15 21 21 C 1.75883 * 90.96897 * 0.34354 * 20 19 18 22 22 N 1.48038 * 125.20266 * 179.91855 * 21 20 19 23 23 O 1.21801 * 120.00079 * 179.69486 * 22 21 20 24 24 O 1.21805 * 120.00214 * 359.42821 * 22 21 20 25 25 C 1.33390 * 109.59116 * 359.65789 * 21 20 19 26 26 H 1.09002 * 109.47265 * 172.40595 * 1 2 3 27 27 H 1.08998 * 109.47306 * 292.41160 * 1 2 3 28 28 H 1.08996 * 109.47264 * 52.41138 * 1 2 3 29 29 H 1.08997 * 109.47104 * 239.99449 * 2 1 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47008 * 299.99859 * 3 2 1 32 32 H 1.09007 * 109.46744 * 59.99790 * 3 2 1 33 33 H 1.09000 * 109.46956 * 305.36191 * 4 2 1 34 34 H 1.08992 * 109.47253 * 185.35879 * 4 2 1 35 35 H 1.08998 * 109.47173 * 34.17560 * 6 5 4 36 36 H 1.08996 * 109.47287 * 154.18286 * 6 5 4 37 37 H 0.97002 * 120.00458 * 180.02562 * 10 9 7 38 38 H 1.08006 * 125.20672 * 0.05004 * 19 18 15 39 39 H 1.08004 * 122.53714 * 180.28447 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6597 -2.1347 1.1866 6 6 0.3517 -2.5643 1.6871 7 6 0.4408 -2.8213 3.1694 8 1 1.3781 -2.6794 3.6867 9 6 -0.6742 -3.2388 3.8649 10 7 -1.8152 -3.4132 3.2348 11 14 -0.5635 -3.5582 5.7021 12 1 0.8208 -3.2909 6.1685 13 1 -1.5080 -2.6632 6.4178 14 1 -0.9156 -4.9737 5.9806 15 16 2.7085 -3.2468 0.5498 16 8 3.5790 -2.5287 -0.3139 17 8 1.9160 -4.3441 0.1174 18 6 3.7040 -3.8437 1.8755 19 6 4.8578 -3.2704 2.2209 20 16 5.5605 -4.1329 3.5830 21 6 4.2131 -5.2632 3.6008 22 7 4.0592 -6.3929 4.5452 23 8 3.0815 -7.1160 4.4756 24 8 4.9127 -6.6022 5.3886 25 6 3.3483 -4.9434 2.6369 26 1 -0.3634 -1.0187 -0.1358 27 1 -0.3634 0.3918 0.9500 28 1 -0.3633 0.6268 -0.8143 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6003 -0.2659 2.1367 34 1 3.1257 -0.6389 1.2986 35 1 -0.3844 -1.7830 1.4976 36 1 0.0500 -3.4792 1.1772 37 1 -2.5997 -3.7065 3.7241 38 1 5.2916 -2.4056 1.7408 39 1 2.4391 -5.5003 2.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000768837225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:48 Heat of formation + Delta-G solvation = -44.677848 kcal Electronic energy + Delta-G solvation = -27477.933598 eV Core-core repulsion = 23450.128318 eV Total energy + Delta-G solvation = -4027.805280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00244 -38.34367 -37.38173 -36.91985 -36.47501 -35.55168 -33.82798 -32.28990 -31.13951 -27.85520 -26.82620 -26.71344 -25.11895 -24.30328 -22.40523 -21.08080 -20.14208 -19.82944 -18.40987 -18.17180 -17.56362 -17.01724 -17.00386 -16.85474 -16.37860 -15.76596 -14.67104 -14.58846 -14.17205 -13.81286 -13.78878 -13.51755 -13.43845 -12.80047 -12.53818 -12.22729 -11.98153 -11.97050 -11.80757 -11.73037 -11.60194 -11.48305 -11.38691 -11.34094 -11.28832 -11.12392 -10.98567 -10.87708 -10.69610 -10.36242 -10.30425 -10.16006 -9.90076 -9.86251 -9.23149 -8.59259 -8.23413 -6.23423 -4.30726 -0.41887 0.35300 0.60515 0.89472 1.17911 1.66454 1.89735 3.18533 3.26620 3.29439 3.36714 3.98927 4.27139 4.30118 4.48641 4.92758 4.99609 5.06814 5.12336 5.16193 5.27009 5.37921 5.48700 5.62451 5.83800 5.92036 6.03786 6.09710 6.15681 6.25545 6.30796 6.41385 6.59860 6.74498 7.15566 7.25229 7.43932 7.62448 7.71606 7.99504 8.72760 9.36777 10.84190 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.005873 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.635962 B = 4766.647592 C = 6650.948863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.135 3.865 5 N -0.971 5.971 6 C 0.234 3.766 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.072 3.928 10 N -0.882 5.882 11 Si 0.885 3.115 12 H -0.276 1.276 13 H -0.281 1.281 14 H -0.277 1.277 15 S 2.699 3.301 16 O -0.965 6.965 17 O -0.942 6.942 18 C -0.685 4.685 19 C -0.060 4.060 20 S 0.257 5.743 21 C -0.193 4.193 22 N 0.064 4.936 23 O -0.133 6.133 24 O -0.166 6.166 25 C 0.062 3.938 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.202 0.798 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.287 5.540 -3.592 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.201 4.201 4 C 0.008 3.992 5 N -0.810 5.810 6 C 0.113 3.887 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.520 5.520 11 Si 0.712 3.288 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.203 1.203 15 S 2.782 3.218 16 O -0.955 6.955 17 O -0.933 6.933 18 C -0.779 4.779 19 C -0.201 4.201 20 S 0.521 5.479 21 C -0.394 4.394 22 N 0.585 4.415 23 O -0.354 6.354 24 O -0.378 6.378 25 C 0.029 3.971 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.219 0.781 39 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 13.609 5.877 -3.890 15.326 hybrid contribution -1.156 -0.684 1.436 1.967 sum 12.453 5.193 -2.454 13.713 Atomic orbital electron populations 1.21952 0.94546 1.02635 1.01382 1.21582 0.97015 0.95967 0.99006 1.21769 1.00679 0.95909 1.01708 1.21257 0.98473 0.80786 0.98666 1.57412 1.28993 1.16035 1.78605 1.19551 0.77388 0.97618 0.94133 1.21503 0.96482 1.47222 0.93549 0.92378 1.24864 0.95231 0.94837 0.98281 1.69901 1.00567 1.45370 1.36113 0.86656 0.78124 0.78570 0.85438 1.20124 1.20654 1.20303 1.02145 0.72742 0.73589 0.73351 1.93543 1.67600 1.72840 1.61550 1.93587 1.67634 1.53194 1.78840 1.30576 1.12692 1.08239 1.26442 1.26308 0.95951 1.01247 0.96565 1.84393 1.17632 1.18414 1.27493 1.25995 1.07614 1.01283 1.04503 1.42416 0.99922 0.99743 0.99413 1.94624 1.20810 1.43045 1.76871 1.94538 1.36901 1.76625 1.29771 1.19970 0.97958 0.91904 0.87303 0.91377 0.92259 0.93619 0.90900 0.92827 0.92746 0.92604 0.89527 0.91803 0.92311 0.92829 0.92386 0.78133 0.79671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 7.84 37.16 0.29 -1.85 16 2 C -0.12 -1.57 3.12 -90.62 -0.28 -1.86 16 3 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 4 C 0.13 1.98 4.83 -4.04 -0.02 1.96 16 5 N -0.97 -17.27 2.67 -115.66 -0.31 -17.58 16 6 C 0.23 5.17 4.70 -5.19 -0.02 5.15 16 7 C -0.55 -13.35 9.39 -34.44 -0.32 -13.67 16 8 H 0.06 1.38 7.81 -52.49 -0.41 0.97 16 9 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 10 N -0.88 -23.97 13.28 55.43 0.74 -23.23 16 11 Si 0.88 20.65 29.54 -169.99 -5.02 15.63 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 S 2.70 46.50 5.71 -107.50 -0.61 45.89 16 16 O -0.97 -16.11 16.52 -57.17 -0.94 -17.05 16 17 O -0.94 -19.37 16.19 -57.17 -0.93 -20.30 16 18 C -0.68 -10.51 5.89 -41.21 -0.24 -10.75 16 19 C -0.06 -0.71 10.70 29.04 0.31 -0.40 16 20 S 0.26 3.04 23.14 -107.50 -2.49 0.56 16 21 C -0.19 -3.15 7.50 -11.32 -0.08 -3.23 16 22 N 0.06 1.15 4.46 33.44 0.15 1.30 16 23 O -0.13 -2.55 18.94 -29.46 -0.56 -3.11 16 24 O -0.17 -2.88 19.08 -29.46 -0.56 -3.44 16 25 C 0.06 1.05 9.35 -41.21 -0.39 0.67 16 26 H 0.07 1.12 6.22 -51.93 -0.32 0.80 16 27 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 28 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.07 1.05 8.01 -51.93 -0.42 0.63 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 1.30 8.09 -51.93 -0.42 0.88 16 34 H 0.06 0.77 7.67 -51.93 -0.40 0.38 16 35 H 0.06 1.32 5.48 -51.93 -0.28 1.03 16 36 H 0.05 1.31 6.93 -51.93 -0.36 0.95 16 37 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.20 1.62 8.00 -52.48 -0.42 1.20 16 39 H 0.19 3.33 7.92 -52.48 -0.42 2.92 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -30.00 363.87 -10.26 -40.26 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.69 Total: -0.98 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -0.52 Total: -23.43 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.58 Total: -39.52 kcal Atomic # 8 Polarization: -40.92 SS G_CDS: -2.99 Total: -43.91 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 49.55 SS G_CDS: -3.10 Total: 46.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.00 -10.26 -40.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768837225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.416 kcal (2) G-P(sol) polarization free energy of solvation -30.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds