Wall clock time and date at job start Wed Apr 1 2020 06:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47277 * 2 1 4 4 C 1.53006 * 109.46996 * 119.99982 * 2 1 3 5 5 N 1.46501 * 109.47055 * 65.35615 * 4 2 1 6 6 C 1.46498 * 120.00111 * 273.30397 * 5 4 2 7 7 C 1.50703 * 109.46808 * 274.18200 * 6 5 4 8 8 H 1.07996 * 120.00304 * 359.97438 * 7 6 5 9 9 C 1.37887 * 119.99711 * 180.02562 * 7 6 5 10 10 N 1.31502 * 120.00149 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99564 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47219 * 0.02562 * 11 9 7 13 13 H 1.48508 * 109.46630 * 120.00325 * 11 9 7 14 14 H 1.48500 * 109.47202 * 239.99781 * 11 9 7 15 15 S 1.65597 * 120.00085 * 93.30211 * 5 4 2 16 16 O 1.42105 * 106.39852 * 336.46044 * 15 5 4 17 17 O 1.42094 * 106.40461 * 203.53944 * 15 5 4 18 18 C 1.76203 * 107.21696 * 89.99920 * 15 5 4 19 19 C 1.33390 * 122.53847 * 269.97501 * 18 15 5 20 20 S 1.75880 * 109.59367 * 179.75899 * 19 18 15 21 21 C 1.75883 * 90.96897 * 0.34354 * 20 19 18 22 22 N 1.48038 * 125.20266 * 179.91855 * 21 20 19 23 23 O 1.21801 * 120.00079 * 179.69486 * 22 21 20 24 24 O 1.21805 * 120.00214 * 359.42821 * 22 21 20 25 25 C 1.33390 * 109.59116 * 359.65789 * 21 20 19 26 26 H 1.09002 * 109.47265 * 172.40595 * 1 2 3 27 27 H 1.08998 * 109.47306 * 292.41160 * 1 2 3 28 28 H 1.08996 * 109.47264 * 52.41138 * 1 2 3 29 29 H 1.08997 * 109.47104 * 239.99449 * 2 1 3 30 30 H 1.09000 * 109.47129 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47008 * 299.99859 * 3 2 1 32 32 H 1.09007 * 109.46744 * 59.99790 * 3 2 1 33 33 H 1.09000 * 109.46956 * 305.36191 * 4 2 1 34 34 H 1.08992 * 109.47253 * 185.35879 * 4 2 1 35 35 H 1.08998 * 109.47173 * 34.17560 * 6 5 4 36 36 H 1.08996 * 109.47287 * 154.18286 * 6 5 4 37 37 H 0.97002 * 120.00458 * 180.02562 * 10 9 7 38 38 H 1.08006 * 125.20672 * 0.05004 * 19 18 15 39 39 H 1.08004 * 122.53714 * 180.28447 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 1.6597 -2.1347 1.1866 6 6 0.3517 -2.5643 1.6871 7 6 0.4408 -2.8213 3.1694 8 1 1.3781 -2.6794 3.6867 9 6 -0.6742 -3.2388 3.8649 10 7 -1.8152 -3.4132 3.2348 11 14 -0.5635 -3.5582 5.7021 12 1 0.8208 -3.2909 6.1685 13 1 -1.5080 -2.6632 6.4178 14 1 -0.9156 -4.9737 5.9806 15 16 2.7085 -3.2468 0.5498 16 8 3.5790 -2.5287 -0.3139 17 8 1.9160 -4.3441 0.1174 18 6 3.7040 -3.8437 1.8755 19 6 4.8578 -3.2704 2.2209 20 16 5.5605 -4.1329 3.5830 21 6 4.2131 -5.2632 3.6008 22 7 4.0592 -6.3929 4.5452 23 8 3.0815 -7.1160 4.4756 24 8 4.9127 -6.6022 5.3886 25 6 3.3483 -4.9434 2.6369 26 1 -0.3634 -1.0187 -0.1358 27 1 -0.3634 0.3918 0.9500 28 1 -0.3633 0.6268 -0.8143 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6003 -0.2659 2.1367 34 1 3.1257 -0.6389 1.2986 35 1 -0.3844 -1.7830 1.4976 36 1 0.0500 -3.4792 1.1772 37 1 -2.5997 -3.7065 3.7241 38 1 5.2916 -2.4056 1.7408 39 1 2.4391 -5.5003 2.4640 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000768837225.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:00:37 Heat of formation + Delta-G solvation = -63.098076 kcal Electronic energy + Delta-G solvation = -27478.732359 eV Core-core repulsion = 23450.128318 eV Total energy + Delta-G solvation = -4028.604041 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 10.50 seconds Orbital eigenvalues (eV) -43.36530 -39.54416 -38.66606 -38.34632 -37.85367 -36.99157 -35.38041 -33.95115 -32.34814 -29.51074 -27.98839 -27.89470 -26.53888 -25.54548 -24.10657 -22.39933 -21.25865 -21.07360 -19.75564 -19.48588 -18.93316 -18.69386 -18.31865 -18.13450 -17.88772 -17.17739 -16.40216 -15.87332 -15.41877 -15.01164 -14.95514 -14.83709 -14.62645 -14.26453 -14.07332 -13.63261 -13.32671 -13.21673 -13.11768 -13.08697 -13.00837 -12.98916 -12.81776 -12.74451 -12.71530 -12.54392 -12.50748 -12.30239 -12.08986 -11.89484 -11.67925 -11.49553 -11.39226 -11.07781 -10.58975 -10.26196 -9.73733 -8.22218 -6.32835 -1.64006 -0.83409 -0.65855 -0.36224 0.01932 0.47719 0.60707 1.30419 1.36859 1.40830 1.99905 2.34552 2.64668 3.06330 3.11963 3.48675 3.64327 3.80800 3.91078 4.11083 4.20466 4.28258 4.32842 4.35958 4.77680 4.89132 4.89904 4.97802 5.03932 5.12770 5.18417 5.29660 5.38269 5.47595 5.57135 5.61052 5.73526 5.91928 6.07468 6.21860 6.79036 7.36608 8.85522 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.009304 B = 0.005873 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.635962 B = 4766.647592 C = 6650.948863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.137 4.137 4 C 0.123 3.877 5 N -0.975 5.975 6 C 0.251 3.749 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.024 3.976 10 N -0.918 5.918 11 Si 0.932 3.068 12 H -0.271 1.271 13 H -0.272 1.272 14 H -0.289 1.289 15 S 2.712 3.288 16 O -0.957 6.957 17 O -0.988 6.988 18 C -0.710 4.710 19 C -0.035 4.035 20 S 0.360 5.640 21 C -0.226 4.226 22 N 0.063 4.937 23 O -0.197 6.197 24 O -0.135 6.135 25 C 0.047 3.953 26 H 0.037 0.963 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.052 0.948 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.249 0.751 39 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.013 8.170 -2.966 18.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.136 4.136 3 C -0.195 4.195 4 C -0.002 4.002 5 N -0.814 5.814 6 C 0.128 3.872 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.176 4.176 10 N -0.557 5.557 11 Si 0.759 3.241 12 H -0.195 1.195 13 H -0.198 1.198 14 H -0.215 1.215 15 S 2.799 3.201 16 O -0.947 6.947 17 O -0.978 6.978 18 C -0.807 4.807 19 C -0.176 4.176 20 S 0.623 5.377 21 C -0.427 4.427 22 N 0.580 4.420 23 O -0.402 6.402 24 O -0.359 6.359 25 C 0.013 3.987 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.265 0.735 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 17.213 8.492 -3.332 19.481 hybrid contribution -2.038 -1.430 1.251 2.787 sum 15.175 7.062 -2.081 16.867 Atomic orbital electron populations 1.21920 0.95809 1.01044 1.01658 1.21599 0.95976 0.97905 0.98154 1.21733 1.01678 0.93558 1.02523 1.21603 1.00661 0.78822 0.99097 1.57265 1.27793 1.17824 1.78525 1.19041 0.79511 0.95996 0.92688 1.21835 0.96215 1.45236 0.94596 0.91683 1.25514 0.95356 0.95397 1.01366 1.69998 1.01194 1.47233 1.37299 0.85902 0.78338 0.77736 0.82119 1.19502 1.19779 1.21535 1.01424 0.72519 0.72702 0.73494 1.93540 1.66968 1.72540 1.61634 1.93536 1.69212 1.54865 1.80217 1.30047 1.14491 1.09188 1.26959 1.26999 0.93871 1.01120 0.95578 1.84140 1.13537 1.14746 1.25276 1.26328 1.10162 1.01866 1.04342 1.42643 0.99584 1.00124 0.99608 1.94644 1.22030 1.45039 1.78500 1.94481 1.36064 1.76075 1.29232 1.19858 0.97711 0.92732 0.88413 0.94358 0.92987 0.91841 0.91658 0.91170 0.91833 0.91986 0.89789 0.88253 0.93045 0.96238 0.92546 0.73466 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 7.84 71.98 0.56 -3.69 16 2 C -0.12 -2.96 3.12 -10.79 -0.03 -2.99 16 3 C -0.14 -2.52 9.19 71.98 0.66 -1.85 16 4 C 0.12 3.35 4.83 86.38 0.42 3.77 16 5 N -0.98 -34.46 2.67 -519.85 -1.39 -35.85 16 6 C 0.25 11.49 4.70 85.63 0.40 11.89 16 7 C -0.54 -26.71 9.39 25.60 0.24 -26.47 16 8 H 0.06 3.07 7.81 -2.91 -0.02 3.04 16 9 C 0.02 1.29 5.46 84.66 0.46 1.75 16 10 N -0.92 -51.81 13.28 21.45 0.28 -51.53 16 11 Si 0.93 42.98 29.54 68.60 2.03 45.01 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 14 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 15 S 2.71 92.19 5.71 -56.49 -0.32 91.87 16 16 O -0.96 -29.59 16.52 -128.00 -2.11 -31.71 16 17 O -0.99 -42.64 16.19 -128.00 -2.07 -44.72 16 18 C -0.71 -20.54 5.89 21.21 0.12 -20.42 16 19 C -0.04 -0.66 10.70 66.72 0.71 0.05 16 20 S 0.36 6.86 23.14 -56.49 -1.31 5.55 16 21 C -0.23 -7.08 7.50 80.82 0.61 -6.47 16 22 N 0.06 2.26 4.46 -48.12 -0.21 2.04 16 23 O -0.20 -7.97 18.94 18.88 0.36 -7.61 16 24 O -0.14 -4.47 19.08 18.88 0.36 -4.11 16 25 C 0.05 1.61 9.35 21.21 0.20 1.81 16 26 H 0.04 1.31 6.22 -2.39 -0.01 1.30 16 27 H 0.05 1.55 8.05 -2.39 -0.02 1.53 16 28 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 29 H 0.06 1.77 8.01 -2.39 -0.02 1.75 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 2.35 8.09 -2.39 -0.02 2.33 16 34 H 0.10 1.98 7.67 -2.39 -0.02 1.96 16 35 H 0.05 2.42 5.48 -2.39 -0.01 2.41 16 36 H 0.02 1.03 6.93 -2.39 -0.02 1.01 16 37 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 38 H 0.25 2.21 8.00 -2.91 -0.02 2.19 16 39 H 0.16 6.14 7.92 -2.91 -0.02 6.12 16 Total: -1.00 -68.68 363.87 1.05 -67.62 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: 1.08 Total: 6.04 kcal Atomic # 6 Polarization: -46.97 SS G_CDS: 4.36 Total: -42.62 kcal Atomic # 7 Polarization: -84.01 SS G_CDS: -1.32 Total: -85.33 kcal Atomic # 8 Polarization: -84.68 SS G_CDS: -3.47 Total: -88.15 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 99.05 SS G_CDS: -1.63 Total: 97.42 kcal Total: -68.68 1.05 -67.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000768837225.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.525 kcal (2) G-P(sol) polarization free energy of solvation -68.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.50 seconds