Wall clock time and date at job start Wed Apr 1 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.77228 * 127.34217 * 2 1 4 4 C 1.72213 * 94.84749 * 179.81232 * 3 2 1 5 5 O 1.21822 * 127.05748 * 180.20147 * 4 3 2 6 6 N 1.34245 * 105.88514 * 0.31874 * 4 3 2 7 7 C 1.46499 * 121.38272 * 179.88299 * 6 4 3 8 8 C 1.50701 * 109.46992 * 269.71883 * 7 6 4 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 S 1.65603 * 119.99626 * 180.02562 * 10 8 7 12 12 O 1.42097 * 104.27438 * 181.07626 * 11 10 8 13 13 O 1.42098 * 104.27936 * 308.93178 * 11 10 8 14 14 C 1.81401 * 104.44778 * 65.00306 * 11 10 8 15 15 C 1.52998 * 109.46839 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.47158 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99580 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00444 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99716 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47415 * 120.00382 * 20 18 16 23 23 H 1.48508 * 109.46769 * 240.00327 * 20 18 16 24 24 C 1.32566 * 127.33478 * 179.97438 * 2 1 3 25 25 C 1.50693 * 121.65400 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46940 * 270.00255 * 1 2 3 27 27 H 1.08999 * 109.46632 * 29.99797 * 1 2 3 28 28 H 1.08998 * 109.47178 * 149.99973 * 1 2 3 29 29 H 1.09002 * 109.47391 * 149.71873 * 7 6 4 30 30 H 1.09001 * 109.46813 * 29.71929 * 7 6 4 31 31 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 32 32 H 1.08992 * 109.47248 * 299.99512 * 14 11 10 33 33 H 1.09003 * 109.46929 * 60.00161 * 14 11 10 34 34 H 1.09001 * 109.47274 * 299.99906 * 15 14 11 35 35 H 1.09003 * 109.47480 * 60.00160 * 15 14 11 36 36 H 0.96995 * 119.99942 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.46925 * 269.97910 * 25 24 2 38 38 H 1.09008 * 109.46805 * 29.97365 * 25 24 2 39 39 H 1.08997 * 109.47891 * 149.97650 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4839 0.0056 5 8 5.1760 0.9095 0.0112 6 7 3.6508 -0.8026 0.0000 7 6 4.6313 -1.8911 0.0000 8 6 4.9674 -2.2644 -1.4209 9 8 4.4403 -1.6784 -2.3426 10 7 5.8546 -3.2486 -1.6671 11 16 6.2245 -3.6583 -3.2285 12 8 7.1525 -4.7267 -3.1000 13 8 4.9608 -3.8561 -3.8477 14 6 7.0397 -2.1844 -3.9022 15 6 7.4350 -2.4408 -5.3578 16 6 8.1117 -1.2162 -5.9177 17 1 8.2467 -0.3426 -5.2972 18 6 8.5595 -1.2115 -7.2217 19 7 8.3956 -2.2755 -7.9771 20 14 9.3989 0.3062 -7.9155 21 1 9.4590 1.3598 -6.8707 22 1 10.7762 -0.0433 -8.3466 23 1 8.6280 0.8090 -9.0810 24 6 2.3110 -1.0540 0.0005 25 6 1.7707 -2.4608 0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3632 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.2132 -2.7568 0.5138 30 1 5.5357 -1.5654 0.5138 31 1 6.2764 -3.7170 -0.9299 32 1 6.3555 -1.3373 -3.8550 33 1 7.9324 -1.9636 -3.3170 34 1 8.1194 -3.2879 -5.4046 35 1 6.5426 -2.6619 -5.9432 36 1 8.7103 -2.2720 -8.8946 37 1 1.6404 -2.7999 1.0282 38 1 0.8095 -2.4808 -0.5133 39 1 2.4711 -3.1192 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776119071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:21 Heat of formation + Delta-G solvation = -115.218206 kcal Electronic energy + Delta-G solvation = -26496.111616 eV Core-core repulsion = 22465.247477 eV Total energy + Delta-G solvation = -4030.864140 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65146 -39.74384 -37.92097 -36.81024 -35.73449 -34.69563 -33.94951 -33.91853 -31.21079 -30.61930 -29.71651 -25.71732 -25.54818 -24.19946 -22.00944 -21.64487 -20.16787 -19.52908 -18.54546 -18.43396 -17.82898 -17.04456 -16.56925 -16.25447 -16.04933 -15.55284 -15.21890 -15.12244 -14.58133 -14.47876 -14.29588 -14.23056 -13.92301 -13.50950 -13.31984 -12.96882 -12.93472 -12.59351 -12.47293 -12.44743 -11.86597 -11.81927 -11.77359 -11.71873 -11.19126 -11.12690 -11.06467 -10.98002 -10.66234 -10.40103 -10.38093 -10.32939 -9.75702 -9.64895 -9.19783 -8.50518 -8.12714 -6.12762 -4.18069 0.35925 0.69872 1.11783 1.47130 1.78045 1.83467 2.31670 2.64960 3.27235 3.34414 3.39287 3.75580 3.97687 4.07884 4.23661 4.37992 4.50455 4.55087 4.61998 4.70734 4.79566 4.97507 4.99042 5.21233 5.22721 5.27284 5.46750 5.49742 5.54586 5.67505 5.86496 6.35893 6.37007 6.45236 7.01979 7.17954 7.25867 7.31758 7.81107 8.15674 8.85273 9.46847 10.98358 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003189 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.078056 B = 8778.005374 C =10011.723796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.203 4.203 3 S 0.014 5.986 4 C 0.485 3.515 5 O -0.467 6.467 6 N -0.519 5.519 7 C 0.080 3.920 8 C 0.516 3.484 9 O -0.470 6.470 10 N -1.055 6.055 11 S 2.563 3.437 12 O -0.951 6.951 13 O -0.936 6.936 14 C -0.574 4.574 15 C 0.030 3.970 16 C -0.519 4.519 17 H 0.063 0.937 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.099 3.901 25 C -0.102 4.102 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.136 0.864 31 H 0.430 0.570 32 H 0.130 0.870 33 H 0.123 0.877 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.297 -0.468 23.392 27.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.322 4.322 3 S 0.258 5.742 4 C 0.168 3.832 5 O -0.346 6.346 6 N -0.240 5.240 7 C -0.051 4.051 8 C 0.299 3.701 9 O -0.339 6.339 10 N -0.817 5.817 11 S 2.664 3.336 12 O -0.941 6.941 13 O -0.926 6.926 14 C -0.709 4.709 15 C -0.009 4.009 16 C -0.558 4.558 17 H 0.081 0.919 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.728 3.272 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.010 4.010 25 C -0.161 4.161 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.150 0.850 30 H 0.154 0.846 31 H 0.265 0.735 32 H 0.148 0.852 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.358 0.667 22.180 26.987 hybrid contribution 1.411 -0.305 -0.024 1.443 sum -13.948 0.362 22.157 26.184 Atomic orbital electron populations 1.20133 0.85561 1.03613 1.02776 1.23491 0.99776 0.92155 1.16810 1.85142 0.97399 1.10720 1.80975 1.21571 0.94881 0.84523 0.82255 1.90995 1.19190 1.71603 1.52841 1.45612 1.05750 1.06852 1.65809 1.21827 0.95835 0.92366 0.95055 1.20768 0.77887 0.78563 0.92849 1.90972 1.48275 1.49258 1.45443 1.55457 1.50665 1.44416 1.31122 1.06846 0.75745 0.78300 0.72743 1.93598 1.64831 1.51747 1.83928 1.93597 1.40689 1.85232 1.73121 1.30333 1.12001 1.16707 1.11828 1.19002 0.98171 0.99592 0.84145 1.21021 1.38527 0.99108 0.97178 0.91875 1.25060 0.95876 0.96623 0.96878 1.69962 1.46288 1.28417 1.08215 0.86386 0.79106 0.82588 0.79088 1.19557 1.20752 1.20716 1.19193 0.81625 0.98325 1.01857 1.20801 1.02706 0.88992 1.03634 0.90589 0.90687 0.90148 0.84974 0.84627 0.73489 0.85154 0.85895 0.94693 0.94584 0.92552 0.89443 0.88703 0.90756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.10 36.01 0.36 0.04 16 2 C -0.20 -1.77 6.72 -36.21 -0.24 -2.01 16 3 S 0.01 0.15 22.97 -107.50 -2.47 -2.31 16 4 C 0.49 6.60 8.27 53.82 0.45 7.05 16 5 O -0.47 -7.74 17.55 5.08 0.09 -7.65 16 6 N -0.52 -5.63 2.09 -118.57 -0.25 -5.87 16 7 C 0.08 0.67 5.47 -5.19 -0.03 0.64 16 8 C 0.52 6.57 7.37 -10.98 -0.08 6.49 16 9 O -0.47 -8.24 14.53 -11.57 -0.17 -8.41 16 10 N -1.05 -12.31 5.60 31.22 0.17 -12.14 16 11 S 2.56 45.56 5.11 -107.50 -0.55 45.01 16 12 O -0.95 -18.27 18.08 -57.54 -1.04 -19.31 16 13 O -0.94 -19.87 17.04 -64.79 -1.10 -20.97 16 14 C -0.57 -11.70 5.82 37.16 0.22 -11.48 16 15 C 0.03 0.79 4.98 -27.88 -0.14 0.65 16 16 C -0.52 -14.83 9.11 -34.44 -0.31 -15.15 16 17 H 0.06 1.74 7.74 -52.49 -0.41 1.34 16 18 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 19 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 20 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 C 0.10 0.89 6.59 -82.51 -0.54 0.34 16 25 C -0.10 -0.57 9.07 36.00 0.33 -0.25 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.33 6.77 -51.93 -0.35 -0.02 16 29 H 0.13 0.49 6.83 -51.93 -0.35 0.14 16 30 H 0.14 0.90 7.80 -51.93 -0.40 0.49 16 31 H 0.43 2.89 8.79 -34.48 -0.30 2.59 16 32 H 0.13 2.69 7.19 -51.93 -0.37 2.32 16 33 H 0.12 2.19 8.14 -51.92 -0.42 1.76 16 34 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.44 6.69 -51.92 -0.35 0.09 16 39 H 0.07 0.47 6.70 -51.93 -0.35 0.12 16 LS Contribution 361.74 15.07 5.45 5.45 Total: -1.00 -40.75 361.74 -8.80 -49.55 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -4.56 Total: -1.97 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.09 Total: -12.09 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 0.66 Total: -44.12 kcal Atomic # 8 Polarization: -54.11 SS G_CDS: -2.22 Total: -56.34 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 45.71 SS G_CDS: -3.02 Total: 42.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -40.75 -8.80 -49.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.667 kcal (2) G-P(sol) polarization free energy of solvation -40.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds