Wall clock time and date at job start Wed Apr 1 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 S 1.77228 * 127.34217 * 2 1 4 4 C 1.72213 * 94.84749 * 179.81232 * 3 2 1 5 5 O 1.21822 * 127.05748 * 180.20147 * 4 3 2 6 6 N 1.34245 * 105.88514 * 0.31874 * 4 3 2 7 7 C 1.46499 * 121.38272 * 179.88299 * 6 4 3 8 8 C 1.50701 * 109.46992 * 269.71883 * 7 6 4 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 S 1.65603 * 119.99626 * 180.02562 * 10 8 7 12 12 O 1.42097 * 104.27438 * 181.07626 * 11 10 8 13 13 O 1.42098 * 104.27936 * 308.93178 * 11 10 8 14 14 C 1.81401 * 104.44778 * 65.00306 * 11 10 8 15 15 C 1.52998 * 109.46839 * 179.97438 * 14 11 10 16 16 C 1.50706 * 109.47158 * 179.97438 * 15 14 11 17 17 H 1.08000 * 119.99580 * 0.02562 * 16 15 14 18 18 C 1.37873 * 119.99836 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00444 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99716 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47230 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47415 * 120.00382 * 20 18 16 23 23 H 1.48508 * 109.46769 * 240.00327 * 20 18 16 24 24 C 1.32566 * 127.33478 * 179.97438 * 2 1 3 25 25 C 1.50693 * 121.65400 * 0.02562 * 24 2 1 26 26 H 1.09001 * 109.46940 * 270.00255 * 1 2 3 27 27 H 1.08999 * 109.46632 * 29.99797 * 1 2 3 28 28 H 1.08998 * 109.47178 * 149.99973 * 1 2 3 29 29 H 1.09002 * 109.47391 * 149.71873 * 7 6 4 30 30 H 1.09001 * 109.46813 * 29.71929 * 7 6 4 31 31 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 32 32 H 1.08992 * 109.47248 * 299.99512 * 14 11 10 33 33 H 1.09003 * 109.46929 * 60.00161 * 14 11 10 34 34 H 1.09001 * 109.47274 * 299.99906 * 15 14 11 35 35 H 1.09003 * 109.47480 * 60.00160 * 15 14 11 36 36 H 0.96995 * 119.99942 * 179.97438 * 19 18 16 37 37 H 1.09001 * 109.46925 * 269.97910 * 25 24 2 38 38 H 1.09008 * 109.46805 * 29.97365 * 25 24 2 39 39 H 1.08997 * 109.47891 * 149.97650 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5820 1.4090 0.0000 4 6 4.0345 0.4839 0.0056 5 8 5.1760 0.9095 0.0112 6 7 3.6508 -0.8026 0.0000 7 6 4.6313 -1.8911 0.0000 8 6 4.9674 -2.2644 -1.4209 9 8 4.4403 -1.6784 -2.3426 10 7 5.8546 -3.2486 -1.6671 11 16 6.2245 -3.6583 -3.2285 12 8 7.1525 -4.7267 -3.1000 13 8 4.9608 -3.8561 -3.8477 14 6 7.0397 -2.1844 -3.9022 15 6 7.4350 -2.4408 -5.3578 16 6 8.1117 -1.2162 -5.9177 17 1 8.2467 -0.3426 -5.2972 18 6 8.5595 -1.2115 -7.2217 19 7 8.3956 -2.2755 -7.9771 20 14 9.3989 0.3062 -7.9155 21 1 9.4590 1.3598 -6.8707 22 1 10.7762 -0.0433 -8.3466 23 1 8.6280 0.8090 -9.0810 24 6 2.3110 -1.0540 0.0005 25 6 1.7707 -2.4608 0.0005 26 1 -0.3633 0.0000 1.0277 27 1 -0.3632 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 4.2132 -2.7568 0.5138 30 1 5.5357 -1.5654 0.5138 31 1 6.2764 -3.7170 -0.9299 32 1 6.3555 -1.3373 -3.8550 33 1 7.9324 -1.9636 -3.3170 34 1 8.1194 -3.2879 -5.4046 35 1 6.5426 -2.6619 -5.9432 36 1 8.7103 -2.2720 -8.8946 37 1 1.6404 -2.7999 1.0282 38 1 0.8095 -2.4808 -0.5133 39 1 2.4711 -3.1192 -0.5133 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776119071.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:20 Heat of formation + Delta-G solvation = -147.521117 kcal Electronic energy + Delta-G solvation = -26497.512376 eV Core-core repulsion = 22465.247477 eV Total energy + Delta-G solvation = -4032.264899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.52114 -40.81161 -38.84155 -38.37019 -37.31790 -36.04362 -35.81074 -34.62430 -33.24621 -31.30835 -30.23385 -27.72080 -26.25431 -25.11048 -23.73806 -22.85025 -21.02843 -20.81477 -19.58281 -19.27074 -19.24535 -18.55251 -17.86043 -17.48293 -17.25684 -16.71019 -16.62004 -16.55515 -16.28411 -15.53876 -15.30006 -14.94477 -14.86824 -14.56028 -14.48251 -13.99370 -13.85318 -13.69942 -13.56862 -13.46923 -13.43860 -13.33871 -13.02486 -12.91770 -12.86052 -12.57662 -12.41778 -12.32005 -12.12646 -11.87628 -11.83355 -11.63991 -11.30249 -11.15382 -10.71243 -10.49114 -8.92000 -8.33057 -6.47077 -1.11971 -0.18170 0.33884 0.71676 0.76608 0.95194 1.32970 1.35575 1.36685 1.50293 1.65782 2.31749 2.45932 2.81790 3.00051 3.08836 3.45049 3.68658 3.73208 3.92149 3.93338 4.02665 4.09059 4.23990 4.56247 4.60629 4.68798 4.73094 4.89208 5.03058 5.10047 5.15094 5.16696 5.40267 5.51149 5.60476 5.60914 5.98336 6.11178 6.22453 6.64865 7.22978 8.79444 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003189 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.078056 B = 8778.005374 C =10011.723796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.198 4.198 3 S -0.010 6.010 4 C 0.469 3.531 5 O -0.514 6.514 6 N -0.519 5.519 7 C 0.081 3.919 8 C 0.515 3.485 9 O -0.521 6.521 10 N -1.029 6.029 11 S 2.607 3.393 12 O -0.963 6.963 13 O -0.970 6.970 14 C -0.586 4.586 15 C 0.025 3.975 16 C -0.544 4.544 17 H 0.067 0.933 18 C 0.001 3.999 19 N -0.929 5.929 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.270 1.270 23 H -0.276 1.276 24 C 0.085 3.915 25 C -0.102 4.102 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.098 0.902 29 H 0.189 0.811 30 H 0.158 0.842 31 H 0.456 0.544 32 H 0.124 0.876 33 H 0.147 0.853 34 H 0.019 0.981 35 H 0.007 0.993 36 H 0.270 0.730 37 H 0.122 0.878 38 H 0.106 0.894 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.302 -0.989 25.722 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.317 4.317 3 S 0.234 5.766 4 C 0.152 3.848 5 O -0.397 6.397 6 N -0.239 5.239 7 C -0.049 4.049 8 C 0.301 3.699 9 O -0.393 6.393 10 N -0.798 5.798 11 S 2.704 3.296 12 O -0.953 6.953 13 O -0.960 6.960 14 C -0.718 4.718 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.085 0.915 18 C -0.198 4.198 19 N -0.568 5.568 20 Si 0.797 3.203 21 H -0.187 1.187 22 H -0.196 1.196 23 H -0.201 1.201 24 C -0.023 4.023 25 C -0.160 4.160 26 H 0.116 0.884 27 H 0.092 0.908 28 H 0.117 0.883 29 H 0.206 0.794 30 H 0.175 0.825 31 H 0.297 0.703 32 H 0.142 0.858 33 H 0.165 0.835 34 H 0.037 0.963 35 H 0.025 0.975 36 H 0.079 0.921 37 H 0.140 0.860 38 H 0.124 0.876 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.364 0.113 24.530 29.488 hybrid contribution 1.597 -0.184 -0.662 1.739 sum -14.767 -0.071 23.869 28.067 Atomic orbital electron populations 1.20314 0.83007 1.04360 1.04421 1.24035 1.01026 0.90257 1.16342 1.85156 0.97981 1.12822 1.80657 1.21863 0.94737 0.85736 0.82470 1.90950 1.20769 1.72821 1.55157 1.45711 1.07008 1.06424 1.64750 1.22233 0.96994 0.93754 0.91918 1.21671 0.76604 0.77319 0.94338 1.90967 1.50168 1.50853 1.47345 1.54793 1.50505 1.44618 1.29851 1.05226 0.74376 0.76441 0.73515 1.93579 1.65341 1.51608 1.84764 1.93553 1.42056 1.85215 1.75212 1.30289 1.13608 1.18958 1.08957 1.18812 0.96421 0.98487 0.87702 1.21473 1.38878 1.00053 0.97935 0.91488 1.26069 0.96479 1.00009 0.97282 1.70081 1.47316 1.30674 1.08756 0.85273 0.78217 0.78474 0.78354 1.18689 1.19554 1.20105 1.19830 0.80755 1.00119 1.01573 1.20994 1.02756 0.86360 1.05938 0.88412 0.90845 0.88340 0.79367 0.82458 0.70279 0.85759 0.83497 0.96262 0.97517 0.92132 0.85975 0.87597 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.48 10.10 71.24 0.72 0.24 16 2 C -0.20 -3.07 6.72 24.53 0.16 -2.90 16 3 S -0.01 -0.23 22.97 -56.49 -1.30 -1.53 16 4 C 0.47 12.72 8.27 129.87 1.07 13.79 16 5 O -0.51 -17.44 17.55 -4.74 -0.08 -17.52 16 6 N -0.52 -10.31 2.09 -647.49 -1.35 -11.66 16 7 C 0.08 1.10 5.47 85.63 0.47 1.57 16 8 C 0.51 12.17 7.37 87.66 0.65 12.81 16 9 O -0.52 -18.14 14.53 13.34 0.19 -17.94 16 10 N -1.03 -21.77 5.60 -173.53 -0.97 -22.75 16 11 S 2.61 91.71 5.11 -56.49 -0.29 91.42 16 12 O -0.96 -36.14 18.08 -127.65 -2.31 -38.44 16 13 O -0.97 -41.48 17.04 -120.72 -2.06 -43.54 16 14 C -0.59 -24.40 5.82 71.98 0.42 -23.98 16 15 C 0.02 1.35 4.98 29.85 0.15 1.50 16 16 C -0.54 -31.97 9.11 25.60 0.23 -31.74 16 17 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 18 C 0.00 0.03 5.46 84.65 0.46 0.50 16 19 N -0.93 -57.46 13.29 21.45 0.28 -57.18 16 20 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 C 0.09 1.31 6.59 40.71 0.27 1.58 16 25 C -0.10 -0.73 9.07 71.23 0.65 -0.08 16 26 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.10 0.45 6.77 -2.39 -0.02 0.44 16 29 H 0.19 0.41 6.83 -2.39 -0.02 0.39 16 30 H 0.16 1.57 7.80 -2.39 -0.02 1.55 16 31 H 0.46 4.54 8.79 -96.75 -0.85 3.69 16 32 H 0.12 5.32 7.19 -2.39 -0.02 5.30 16 33 H 0.15 5.23 8.14 -2.39 -0.02 5.21 16 34 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 37 H 0.12 0.05 8.14 -2.39 -0.02 0.03 16 38 H 0.11 0.56 6.69 -2.38 -0.02 0.54 16 39 H 0.07 0.61 6.70 -2.39 -0.02 0.59 16 Total: -1.00 -93.81 361.74 -0.34 -94.15 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: 0.26 Total: 4.42 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 5.25 Total: -26.71 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -2.04 Total: -91.59 kcal Atomic # 8 Polarization: -113.19 SS G_CDS: -4.25 Total: -117.45 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 16 Polarization: 91.48 SS G_CDS: -1.59 Total: 89.89 kcal Total: -93.81 -0.34 -94.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776119071.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.371 kcal (2) G-P(sol) polarization free energy of solvation -93.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds