Wall clock time and date at job start Wed Apr 1 2020 05:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.34772 * 120.00110 * 64.99735 * 14 11 10 16 16 O 1.21284 * 120.00168 * 0.02562 * 15 14 11 17 17 C 1.50709 * 119.99747 * 179.97438 * 15 14 11 18 18 C 1.53652 * 112.53777 * 56.31675 * 17 15 14 19 19 C 1.54071 * 101.00866 * 91.29213 * 18 17 15 20 20 C 1.51123 * 104.43894 * 25.68612 * 19 18 17 21 21 O 1.21278 * 124.73032 * 169.23109 * 20 19 18 22 22 N 1.35824 * 110.54199 * 349.21659 * 20 19 18 23 23 C 1.46839 * 138.49583 * 165.20812 * 22 20 19 24 24 C 1.54427 * 113.56256 * 195.65835 * 23 22 20 25 25 S 1.83544 * 112.61782 * 289.95533 * 17 15 14 26 26 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 28 28 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 29 29 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 30 30 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 31 31 H 0.97002 * 119.99347 * 244.99779 * 14 11 10 32 32 H 1.09006 * 111.18353 * 208.37434 * 18 17 15 33 33 H 1.08994 * 111.18607 * 332.68654 * 18 17 15 34 34 H 1.09003 * 109.98156 * 267.13976 * 19 18 17 35 35 H 1.08998 * 110.91331 * 144.70657 * 19 18 17 36 36 H 1.09007 * 108.67661 * 316.73259 * 23 22 20 37 37 H 1.08996 * 108.67634 * 74.75677 * 23 22 20 38 38 H 1.08999 * 110.98851 * 135.57817 * 24 23 22 39 39 H 1.09000 * 110.98690 * 259.38996 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.3463 -6.5124 1.0589 16 8 3.2233 -5.7713 2.0110 17 6 4.4218 -7.5682 1.0598 18 6 5.3596 -7.4546 -0.1521 19 6 6.4612 -6.5378 0.4133 20 6 6.4149 -6.7694 1.9060 21 8 7.2483 -6.3730 2.6929 22 7 5.3097 -7.4832 2.2435 23 6 4.7986 -8.2410 3.3926 24 6 3.6094 -9.1627 3.0447 25 16 3.7432 -9.2670 1.2087 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6247 -2.5571 -0.8897 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8906 31 1 2.6187 -6.9856 -0.7608 32 1 5.7755 -8.4257 -0.4207 33 1 4.8521 -6.9973 -1.0013 34 1 6.2348 -5.4970 0.1818 35 1 7.4381 -6.8121 0.0150 36 1 5.6069 -8.8512 3.7958 37 1 4.4781 -7.5368 4.1604 38 1 3.7302 -10.1450 3.5014 39 1 2.6639 -8.7092 3.3421 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776123553.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:26 Heat of formation + Delta-G solvation = -124.077580 kcal Electronic energy + Delta-G solvation = -27259.009101 eV Core-core repulsion = 23227.760790 eV Total energy + Delta-G solvation = -4031.248311 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58761 -39.60128 -37.15683 -36.85346 -35.85634 -35.13520 -34.36332 -34.20647 -31.13662 -30.19303 -28.82967 -25.19631 -24.87609 -23.56051 -22.16300 -21.89863 -20.16999 -19.54500 -18.97326 -18.04911 -17.65106 -16.83391 -16.46287 -16.36169 -16.21849 -15.67966 -15.39821 -15.28616 -14.85147 -14.45606 -14.19360 -14.05849 -13.80314 -13.71092 -13.53458 -13.09213 -12.96817 -12.65073 -12.42576 -12.20196 -12.05280 -11.96192 -11.85864 -11.80169 -11.31225 -11.22170 -11.05243 -10.77735 -10.62191 -10.53903 -10.34849 -10.34401 -10.07941 -9.30176 -8.75178 -8.52558 -8.49348 -6.51210 -4.24538 0.21433 0.58632 1.24068 1.89382 1.98517 2.10767 2.49417 3.37075 3.37991 3.40331 3.50673 3.59044 3.60293 3.85367 4.02611 4.23794 4.31260 4.35808 4.44702 4.58888 4.59953 4.85538 5.00087 5.03137 5.17049 5.20956 5.23234 5.25110 5.37305 5.45278 5.55945 6.19168 6.28857 6.51515 6.87108 6.98100 7.01904 7.58227 7.89615 8.25524 8.68391 9.47529 10.88681 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.003578 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.743252 B = 7824.467723 C = 8888.785532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.018 3.982 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.600 4.600 8 H 0.056 0.944 9 C 0.017 3.983 10 C -0.568 4.568 11 S 2.562 3.438 12 O -0.934 6.934 13 O -0.947 6.947 14 N -1.047 6.047 15 C 0.545 3.455 16 O -0.461 6.461 17 C 0.138 3.862 18 C -0.109 4.109 19 C -0.148 4.148 20 C 0.548 3.452 21 O -0.505 6.505 22 N -0.603 5.603 23 C 0.121 3.879 24 C -0.083 4.083 25 S -0.211 6.211 26 H 0.270 0.730 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.431 0.569 32 H 0.113 0.887 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.130 0.870 39 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -22.055 -0.426 25.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.187 4.187 3 Si 0.900 3.100 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.639 4.639 8 H 0.074 0.926 9 C -0.022 4.022 10 C -0.703 4.703 11 S 2.662 3.338 12 O -0.924 6.924 13 O -0.937 6.937 14 N -0.808 5.808 15 C 0.324 3.676 16 O -0.330 6.330 17 C -0.065 4.065 18 C -0.148 4.148 19 C -0.189 4.189 20 C 0.336 3.664 21 O -0.377 6.377 22 N -0.342 5.342 23 C -0.001 4.001 24 C -0.231 4.231 25 S 0.018 5.982 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.143 0.857 30 H 0.150 0.850 31 H 0.267 0.733 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.148 0.852 39 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.028 -20.820 0.117 23.561 hybrid contribution 0.834 -1.056 0.435 1.414 sum 11.862 -21.876 0.552 24.891 Atomic orbital electron populations 1.70791 1.06877 1.30786 1.45416 1.25979 0.96507 1.02903 0.93328 0.83482 0.74888 0.74918 0.76679 1.20495 1.21210 1.21224 1.21799 0.94391 0.90481 1.57251 0.92555 1.19104 0.93261 0.92058 0.97808 1.30236 1.13503 1.15500 1.11061 1.06927 0.74961 0.77204 0.74695 1.93607 1.70010 1.84243 1.44504 1.93611 1.70065 1.85170 1.44855 1.55362 1.48738 1.50350 1.26368 1.20046 0.81684 0.83921 0.81948 1.90968 1.68416 1.41581 1.32073 1.24203 0.93976 0.94498 0.93790 1.22512 0.94543 1.03254 0.94487 1.22367 1.02025 1.03132 0.91359 1.21045 0.78678 0.75688 0.90950 1.90764 1.40989 1.49463 1.56510 1.49605 1.19533 1.53682 1.11383 1.21598 0.96451 0.94704 0.87323 1.24826 1.01756 1.04065 0.92498 1.88407 1.85341 1.13986 1.10508 0.91952 0.95491 0.95592 0.85668 0.84967 0.73326 0.86821 0.87448 0.86489 0.85833 0.89133 0.89304 0.85177 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.65 55.43 0.76 -26.65 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.07 24.77 29.90 -169.99 -5.08 19.69 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.60 -16.68 9.11 -34.44 -0.31 -16.99 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.43 4.29 -27.88 -0.12 0.31 16 10 C -0.57 -10.84 5.82 37.16 0.22 -10.63 16 11 S 2.56 43.98 5.11 -107.50 -0.55 43.43 16 12 O -0.93 -19.43 17.04 -64.80 -1.10 -20.53 16 13 O -0.95 -17.60 18.08 -57.54 -1.04 -18.64 16 14 N -1.05 -12.41 5.36 31.22 0.17 -12.24 16 15 C 0.55 6.96 6.60 -10.98 -0.07 6.89 16 16 O -0.46 -7.73 14.74 -11.61 -0.17 -7.90 16 17 C 0.14 1.31 0.72 -67.80 -0.05 1.26 16 18 C -0.11 -0.64 6.23 -25.83 -0.16 -0.80 16 19 C -0.15 -1.06 6.78 -27.12 -0.18 -1.24 16 20 C 0.55 6.40 8.38 -10.30 -0.09 6.31 16 21 O -0.50 -7.85 18.03 5.56 0.10 -7.74 16 22 N -0.60 -6.42 2.92 -159.76 -0.47 -6.88 16 23 C 0.12 1.05 7.25 -3.11 -0.02 1.03 16 24 C -0.08 -0.58 7.55 37.91 0.29 -0.29 16 25 S -0.21 -1.74 22.33 -107.50 -2.40 -4.14 16 26 H 0.27 8.15 7.22 -40.82 -0.29 7.85 16 27 H 0.03 0.71 8.01 -51.93 -0.42 0.30 16 28 H 0.03 0.66 8.01 -51.93 -0.42 0.25 16 29 H 0.13 2.01 8.14 -51.92 -0.42 1.59 16 30 H 0.13 2.52 7.19 -51.92 -0.37 2.14 16 31 H 0.43 3.35 8.29 -34.46 -0.29 3.07 16 32 H 0.11 0.46 7.90 -51.93 -0.41 0.05 16 33 H 0.11 0.41 7.35 -51.93 -0.38 0.02 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.13 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 355.38 15.07 5.36 5.36 Total: -1.00 -39.94 355.38 -9.78 -49.72 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -4.74 Total: 0.28 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -0.60 Total: -13.75 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: 0.46 Total: -45.78 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -2.21 Total: -54.81 kcal Atomic # 14 Polarization: 24.77 SS G_CDS: -5.08 Total: 19.69 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -2.95 Total: 39.29 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -39.94 -9.78 -49.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776123553.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.357 kcal (2) G-P(sol) polarization free energy of solvation -39.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds