Wall clock time and date at job start Wed Apr 1 2020 04:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48502 * 109.46508 * 269.99893 * 3 2 1 5 5 H 1.48493 * 109.47072 * 29.99378 * 3 2 1 6 6 H 1.48492 * 109.46966 * 149.99983 * 3 2 1 7 7 C 1.37879 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00019 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99662 * 179.97438 * 10 9 7 12 12 O 1.21369 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.49313 * 119.99632 * 179.97438 * 11 10 9 14 14 O 1.21396 * 120.00331 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99983 * 179.97438 * 13 11 10 16 16 C 1.39863 * 120.00186 * 185.52770 * 15 13 11 17 17 C 1.38732 * 120.10894 * 24.82438 * 16 15 13 18 18 C 1.38205 * 120.00619 * 179.97438 * 17 16 15 19 19 C 1.38339 * 120.22121 * 0.02562 * 18 17 16 20 20 C 1.38186 * 120.21516 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99777 * 359.97438 * 20 19 18 22 22 S 1.76191 * 120.11385 * 180.02562 * 21 20 19 23 23 C 1.81398 * 103.00083 * 0.02562 * 22 21 20 24 24 F 1.39897 * 109.46969 * 59.99966 * 23 22 21 25 25 F 1.39897 * 109.47436 * 180.02562 * 23 22 21 26 26 F 1.39898 * 109.46944 * 299.99940 * 23 22 21 27 27 H 0.96998 * 120.00270 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47453 * 59.99616 * 9 7 2 29 29 H 1.09004 * 109.46737 * 299.99318 * 9 7 2 30 30 H 0.96987 * 119.99877 * 359.97438 * 10 9 7 31 31 H 0.97008 * 119.99889 * 5.53448 * 15 13 11 32 32 H 1.08001 * 119.99823 * 0.25761 * 17 16 15 33 33 H 1.07998 * 119.89501 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.89423 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.00134 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1136 -1.8992 0.0005 13 6 5.8225 -4.2294 0.0014 14 8 5.0337 -5.1521 0.0023 15 7 7.1476 -4.4757 0.0008 16 6 7.6148 -5.7889 -0.1154 17 6 6.8293 -6.7554 -0.7266 18 6 7.2933 -8.0523 -0.8408 19 6 8.5401 -8.3918 -0.3468 20 6 9.3296 -7.4366 0.2645 21 6 8.8726 -6.1315 0.3841 22 16 9.8770 -4.9110 1.1624 23 6 11.3672 -5.8392 1.6188 24 9 11.9588 -6.3673 0.4664 25 9 12.2716 -4.9845 2.2580 26 9 11.0201 -6.8818 2.4846 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6805 -0.8890 30 1 3.3695 -3.3125 0.0010 31 1 7.7773 -3.7422 0.0811 32 1 5.8571 -6.4935 -1.1172 33 1 6.6802 -8.8034 -1.3165 34 1 8.8976 -9.4067 -0.4393 35 1 10.3026 -7.7053 0.6486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787594282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:59 Heat of formation + Delta-G solvation = -165.414331 kcal Electronic energy + Delta-G solvation = -27054.864104 eV Core-core repulsion = 22344.522605 eV Total energy + Delta-G solvation = -4710.341499 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.86875 -48.46736 -48.38938 -41.17805 -39.38571 -38.11132 -35.56174 -34.43849 -32.47175 -31.64455 -30.24572 -28.44508 -27.16989 -25.19421 -23.68422 -22.91716 -21.63011 -20.25388 -20.13179 -19.41645 -19.25111 -18.82243 -17.83566 -17.47029 -16.87620 -16.13962 -15.97806 -15.43132 -15.27274 -15.25848 -15.21946 -14.96699 -14.78848 -14.76035 -14.49704 -14.34349 -14.17529 -13.99856 -13.53938 -13.42401 -13.28296 -12.54244 -12.50168 -12.34110 -11.94524 -11.39063 -11.24091 -11.12627 -10.90492 -10.87833 -10.55111 -10.07783 -9.61993 -9.42896 -8.91863 -8.85220 -8.49366 -8.20250 -6.29623 -4.34072 -0.55048 0.54865 0.81837 1.03186 1.59121 2.28012 2.44684 3.15509 3.20140 3.26028 3.26587 3.27606 3.32995 3.42799 3.72582 4.24425 4.24990 4.55338 4.71858 4.80193 4.93404 5.01198 5.04575 5.30851 5.60631 5.76171 5.92782 6.09521 6.47060 6.51452 6.69839 6.83807 6.85065 7.17812 7.45025 7.87634 8.27120 8.35532 8.69585 9.27411 10.82019 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002435 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.923839 B =11495.524508 C =12738.218316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.550 4.550 8 H 0.083 0.917 9 C 0.217 3.783 10 N -0.661 5.661 11 C 0.494 3.506 12 O -0.534 6.534 13 C 0.513 3.487 14 O -0.491 6.491 15 N -0.649 5.649 16 C 0.192 3.808 17 C -0.115 4.115 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.144 4.144 22 S -0.022 6.022 23 C 0.454 3.546 24 F -0.163 7.163 25 F -0.145 7.145 26 F -0.162 7.162 27 H 0.269 0.731 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.411 0.589 31 H 0.423 0.577 32 H 0.159 0.841 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.685 -16.539 0.452 28.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.185 1.185 7 C -0.588 4.588 8 H 0.101 0.899 9 C 0.096 3.904 10 N -0.310 5.310 11 C 0.272 3.728 12 O -0.412 6.412 13 C 0.297 3.703 14 O -0.363 6.363 15 N -0.296 5.296 16 C 0.091 3.909 17 C -0.137 4.137 18 C -0.103 4.103 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.259 4.259 22 S 0.212 5.788 23 C 0.293 3.707 24 F -0.145 7.145 25 F -0.126 7.126 26 F -0.144 7.144 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.247 0.753 31 H 0.262 0.738 32 H 0.176 0.824 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 22.331 -15.137 0.719 26.988 hybrid contribution 0.863 -0.485 -0.061 0.992 sum 23.195 -15.623 0.657 27.973 Atomic orbital electron populations 1.69868 1.06218 1.27611 1.48676 1.24777 0.94814 0.99131 0.93704 0.86827 0.80557 0.83229 0.79141 1.19709 1.20725 1.18461 1.21029 0.88020 0.95576 1.54150 0.89875 1.19754 0.95896 0.77161 0.97566 1.46126 1.04707 1.12483 1.67674 1.19582 0.84825 0.87653 0.80748 1.90753 1.55277 1.44858 1.50350 1.20857 0.81958 0.91291 0.76230 1.90732 1.54940 1.45640 1.45032 1.43347 1.08240 1.07316 1.70692 1.17185 0.91523 0.85095 0.97067 1.21497 1.01372 0.92316 0.98498 1.21267 0.95393 0.95978 0.97646 1.21057 0.94433 0.99358 0.98968 1.21115 1.00369 0.90749 1.00096 1.21135 0.98462 0.97210 1.09071 1.86795 1.08439 1.11116 1.72408 1.22809 0.89626 0.80900 0.77415 1.93330 1.85659 1.87017 1.48455 1.93282 1.67927 1.69613 1.81813 1.93334 1.91558 1.59159 1.70305 0.92061 0.94759 0.95226 0.75305 0.73806 0.82367 0.84549 0.84876 0.85448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.69 13.96 55.43 0.77 -24.91 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 20.47 27.47 -169.99 -4.67 15.80 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.55 -14.58 9.83 -34.44 -0.34 -14.92 16 8 H 0.08 2.32 7.84 -52.48 -0.41 1.91 16 9 C 0.22 5.05 4.50 -5.19 -0.02 5.02 16 10 N -0.66 -13.04 5.54 -61.95 -0.34 -13.38 16 11 C 0.49 8.95 7.88 -11.65 -0.09 8.86 16 12 O -0.53 -10.64 16.48 5.48 0.09 -10.55 16 13 C 0.51 7.86 7.69 -11.65 -0.09 7.77 16 14 O -0.49 -7.87 13.64 5.46 0.07 -7.79 16 15 N -0.65 -8.45 5.15 -10.15 -0.05 -8.50 16 16 C 0.19 2.29 6.44 -83.50 -0.54 1.75 16 17 C -0.12 -1.29 8.71 -39.41 -0.34 -1.63 16 18 C -0.08 -0.71 10.04 -39.56 -0.40 -1.10 16 19 C -0.12 -0.93 10.04 -39.56 -0.40 -1.33 16 20 C -0.10 -0.92 8.68 -39.40 -0.34 -1.26 16 21 C -0.14 -1.52 6.12 -38.87 -0.24 -1.76 16 22 S -0.02 -0.21 20.67 -107.50 -2.22 -2.44 16 23 C 0.45 4.02 2.98 101.05 0.30 4.33 16 24 F -0.16 -1.41 15.63 2.25 0.04 -1.37 16 25 F -0.14 -1.30 17.36 2.25 0.04 -1.26 16 26 F -0.16 -1.45 15.63 2.25 0.04 -1.42 16 27 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 29 H 0.03 0.70 7.57 -51.93 -0.39 0.31 16 30 H 0.41 7.63 7.79 -40.82 -0.32 7.31 16 31 H 0.42 5.18 7.13 -40.82 -0.29 4.89 16 32 H 0.16 1.92 5.80 -52.49 -0.30 1.62 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 35 H 0.13 1.04 4.55 -52.49 -0.24 0.80 16 LS Contribution 332.96 15.07 5.02 5.02 Total: -1.00 -29.45 332.96 -6.16 -35.60 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -2.34 Total: 7.39 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -2.59 Total: 7.82 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.38 Total: -46.80 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.16 Total: -18.35 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.11 Total: -4.05 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.22 Total: -2.44 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.45 -6.16 -35.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787594282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.810 kcal (2) G-P(sol) polarization free energy of solvation -29.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds