Wall clock time and date at job start Wed Apr 1 2020 04:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00149 * 2 1 4 4 H 1.48502 * 109.46508 * 269.99893 * 3 2 1 5 5 H 1.48493 * 109.47072 * 29.99378 * 3 2 1 6 6 H 1.48492 * 109.46966 * 149.99983 * 3 2 1 7 7 C 1.37879 * 119.99944 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99794 * 0.02562 * 7 2 1 9 9 C 1.50695 * 120.00019 * 180.02562 * 7 2 1 10 10 N 1.46506 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99662 * 179.97438 * 10 9 7 12 12 O 1.21369 * 120.00370 * 359.97438 * 11 10 9 13 13 C 1.49313 * 119.99632 * 179.97438 * 11 10 9 14 14 O 1.21396 * 120.00331 * 359.97438 * 13 11 10 15 15 N 1.34780 * 119.99983 * 179.97438 * 13 11 10 16 16 C 1.39863 * 120.00186 * 185.52770 * 15 13 11 17 17 C 1.38732 * 120.10894 * 24.82438 * 16 15 13 18 18 C 1.38205 * 120.00619 * 179.97438 * 17 16 15 19 19 C 1.38339 * 120.22121 * 0.02562 * 18 17 16 20 20 C 1.38186 * 120.21516 * 0.02562 * 19 18 17 21 21 C 1.38792 * 119.99777 * 359.97438 * 20 19 18 22 22 S 1.76191 * 120.11385 * 180.02562 * 21 20 19 23 23 C 1.81398 * 103.00083 * 0.02562 * 22 21 20 24 24 F 1.39897 * 109.46969 * 59.99966 * 23 22 21 25 25 F 1.39897 * 109.47436 * 180.02562 * 23 22 21 26 26 F 1.39898 * 109.46944 * 299.99940 * 23 22 21 27 27 H 0.96998 * 120.00270 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47453 * 59.99616 * 9 7 2 29 29 H 1.09004 * 109.46737 * 299.99318 * 9 7 2 30 30 H 0.96987 * 119.99877 * 359.97438 * 10 9 7 31 31 H 0.97008 * 119.99889 * 5.53448 * 15 13 11 32 32 H 1.08001 * 119.99823 * 0.25761 * 17 16 15 33 33 H 1.07998 * 119.89501 * 179.97438 * 18 17 16 34 34 H 1.07997 * 119.89423 * 180.02562 * 19 18 17 35 35 H 1.07999 * 120.00134 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 5.3249 -2.8216 0.0009 12 8 6.1136 -1.8992 0.0005 13 6 5.8225 -4.2294 0.0014 14 8 5.0337 -5.1521 0.0023 15 7 7.1476 -4.4757 0.0008 16 6 7.6148 -5.7889 -0.1154 17 6 6.8293 -6.7554 -0.7266 18 6 7.2933 -8.0523 -0.8408 19 6 8.5401 -8.3918 -0.3468 20 6 9.3296 -7.4366 0.2645 21 6 8.8726 -6.1315 0.3841 22 16 9.8770 -4.9110 1.1624 23 6 11.3672 -5.8392 1.6188 24 9 11.9588 -6.3673 0.4664 25 9 12.2716 -4.9845 2.2580 26 9 11.0201 -6.8818 2.4846 27 1 -0.4850 0.8400 -0.0004 28 1 3.8745 -0.6800 0.8911 29 1 3.8751 -0.6805 -0.8890 30 1 3.3695 -3.3125 0.0010 31 1 7.7773 -3.7422 0.0811 32 1 5.8571 -6.4935 -1.1172 33 1 6.6802 -8.8034 -1.3165 34 1 8.8976 -9.4067 -0.4393 35 1 10.3026 -7.7053 0.6486 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787594282.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:59:58 Heat of formation + Delta-G solvation = -184.994359 kcal Electronic energy + Delta-G solvation = -27055.713158 eV Core-core repulsion = 22344.522605 eV Total energy + Delta-G solvation = -4711.190552 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -51.57876 -49.17901 -49.09298 -42.32795 -40.54612 -39.31365 -36.82504 -35.94436 -34.44667 -32.39118 -31.17123 -30.26072 -27.89443 -26.54708 -24.56467 -24.15145 -23.04458 -21.58027 -20.98405 -20.23377 -20.04075 -19.95531 -18.83529 -18.63674 -18.28348 -17.44282 -17.28190 -16.93933 -16.20088 -16.16585 -15.98690 -15.93987 -15.84578 -15.61835 -15.49496 -15.32448 -15.20058 -15.03883 -14.74132 -14.45398 -14.43028 -14.24317 -14.02744 -13.37688 -13.12461 -12.79731 -12.70618 -12.42359 -12.01946 -11.92383 -11.80224 -11.70175 -11.30780 -10.93524 -10.80553 -10.22518 -9.66925 -9.00756 -8.39892 -6.49404 -1.28819 -0.34947 0.01154 0.26571 0.44775 1.06813 1.36569 1.38923 1.49914 1.73165 1.93979 2.28674 2.45346 2.50261 2.55272 2.58760 2.95241 3.27188 3.49412 3.89002 4.07499 4.13230 4.27394 4.58244 4.63859 4.75445 4.94633 5.02348 5.10372 5.17171 5.22127 5.37365 5.65015 5.73324 5.98407 6.29694 6.46318 6.58875 6.83226 7.16977 8.74919 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.018120 B = 0.002435 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.923839 B =11495.524508 C =12738.218316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.026 3.974 3 Si 0.941 3.059 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.251 1.251 7 C -0.555 4.555 8 H 0.056 0.944 9 C 0.228 3.772 10 N -0.667 5.667 11 C 0.498 3.502 12 O -0.550 6.550 13 C 0.523 3.477 14 O -0.501 6.501 15 N -0.638 5.638 16 C 0.164 3.836 17 C -0.129 4.129 18 C -0.078 4.078 19 C -0.104 4.104 20 C -0.106 4.106 21 C -0.147 4.147 22 S -0.033 6.033 23 C 0.463 3.537 24 F -0.159 7.159 25 F -0.145 7.145 26 F -0.160 7.160 27 H 0.273 0.727 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.415 0.585 31 H 0.425 0.575 32 H 0.145 0.855 33 H 0.164 0.836 34 H 0.168 0.832 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.932 -17.736 0.327 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.764 3.236 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.175 1.175 7 C -0.592 4.592 8 H 0.074 0.926 9 C 0.106 3.894 10 N -0.317 5.317 11 C 0.278 3.722 12 O -0.429 6.429 13 C 0.306 3.694 14 O -0.374 6.374 15 N -0.284 5.284 16 C 0.065 3.935 17 C -0.151 4.151 18 C -0.098 4.098 19 C -0.124 4.124 20 C -0.129 4.129 21 C -0.261 4.261 22 S 0.202 5.798 23 C 0.301 3.699 24 F -0.141 7.141 25 F -0.126 7.126 26 F -0.142 7.142 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.252 0.748 31 H 0.265 0.735 32 H 0.162 0.838 33 H 0.182 0.818 34 H 0.186 0.814 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 24.623 -16.372 0.592 29.576 hybrid contribution 0.237 -0.288 -0.030 0.374 sum 24.860 -16.660 0.562 29.931 Atomic orbital electron populations 1.69987 1.07935 1.28808 1.50196 1.25645 0.95574 1.02897 0.93300 0.85807 0.79458 0.78718 0.79651 1.18740 1.20101 1.17521 1.21240 0.89822 0.94701 1.53467 0.92583 1.19408 0.93673 0.79068 0.97272 1.45936 1.05702 1.11337 1.68720 1.19959 0.83905 0.88957 0.79371 1.90735 1.55532 1.45951 1.50687 1.20107 0.82825 0.89532 0.76971 1.90740 1.55408 1.45253 1.46047 1.43167 1.07140 1.08310 1.69814 1.17327 0.92584 0.84462 0.99156 1.21542 1.00996 0.93505 0.99011 1.21592 0.95949 0.95306 0.96976 1.21487 0.93558 1.00606 0.96781 1.21388 1.01055 0.90344 1.00101 1.21219 0.97994 0.97974 1.08958 1.86829 1.09055 1.11520 1.72430 1.22605 0.89155 0.80740 0.77422 1.93337 1.85538 1.86922 1.48309 1.93285 1.67819 1.69688 1.81821 1.93337 1.91549 1.59048 1.70294 0.91735 0.95128 0.95186 0.74802 0.73524 0.83767 0.81826 0.81423 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.96 21.45 0.30 -54.57 16 2 C 0.03 1.46 5.47 84.66 0.46 1.92 16 3 Si 0.94 42.00 27.47 68.60 1.88 43.88 16 4 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.25 -10.78 6.54 99.48 0.65 -10.13 16 7 C -0.55 -29.95 9.83 25.60 0.25 -29.70 16 8 H 0.06 3.25 7.84 -2.91 -0.02 3.23 16 9 C 0.23 10.60 4.50 85.63 0.38 10.98 16 10 N -0.67 -26.56 5.54 -468.26 -2.59 -29.15 16 11 C 0.50 18.03 7.88 87.23 0.69 18.72 16 12 O -0.55 -21.69 16.48 -3.30 -0.05 -21.75 16 13 C 0.52 15.97 7.69 87.23 0.67 16.64 16 14 O -0.50 -16.06 13.64 -3.39 -0.05 -16.11 16 15 N -0.64 -16.36 5.15 -304.38 -1.57 -17.93 16 16 C 0.16 3.77 6.44 38.31 0.25 4.01 16 17 C -0.13 -2.74 8.71 22.38 0.19 -2.54 16 18 C -0.08 -1.13 10.04 22.29 0.22 -0.90 16 19 C -0.10 -1.28 10.04 22.28 0.22 -1.06 16 20 C -0.11 -1.66 8.68 22.39 0.19 -1.46 16 21 C -0.15 -2.89 6.12 22.73 0.14 -2.75 16 22 S -0.03 -0.60 20.67 -56.49 -1.17 -1.77 16 23 C 0.46 7.42 2.98 113.37 0.34 7.76 16 24 F -0.16 -2.44 15.63 44.97 0.70 -1.73 16 25 F -0.14 -2.39 17.36 44.97 0.78 -1.61 16 26 F -0.16 -2.57 15.63 44.97 0.70 -1.87 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H 0.03 1.45 7.20 -2.38 -0.02 1.44 16 29 H 0.03 1.40 7.57 -2.38 -0.02 1.38 16 30 H 0.42 15.78 7.79 -92.72 -0.72 15.05 16 31 H 0.43 10.28 7.13 -92.70 -0.66 9.62 16 32 H 0.14 3.46 5.80 -2.91 -0.02 3.45 16 33 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.17 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.14 1.85 4.55 -2.91 -0.01 1.84 16 Total: -1.00 -63.19 332.96 2.73 -60.46 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: -0.22 Total: 20.51 kcal Atomic # 6 Polarization: 17.61 SS G_CDS: 4.02 Total: 21.63 kcal Atomic # 7 Polarization: -97.79 SS G_CDS: -3.86 Total: -101.65 kcal Atomic # 8 Polarization: -37.76 SS G_CDS: -0.10 Total: -37.86 kcal Atomic # 9 Polarization: -7.39 SS G_CDS: 2.19 Total: -5.21 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.88 Total: 43.88 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -1.17 Total: -1.77 kcal Total: -63.19 2.73 -60.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787594282.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.533 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds