Wall clock time and date at job start Wed Apr 1 2020 04:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48507 * 109.47341 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.47207 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47455 * 150.00150 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 197.93369 * 7 2 1 9 9 C 1.41217 * 120.00226 * 17.92863 * 7 2 1 10 10 C 1.40833 * 120.17634 * 24.54833 * 9 7 2 11 11 C 1.36434 * 119.81229 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18388 * 0.28410 * 11 10 9 13 13 O 1.35679 * 119.82012 * 179.72146 * 12 11 10 14 14 S 1.52199 * 113.99803 * 89.99892 * 13 12 11 15 15 O 1.42103 * 106.40213 * 188.54209 * 14 13 12 16 16 O 1.42104 * 106.40211 * 321.46017 * 14 13 12 17 17 C 1.76198 * 107.21954 * 75.00013 * 14 13 12 18 18 C 1.38276 * 119.98800 * 269.72010 * 17 14 13 19 19 C 1.38207 * 120.14409 * 179.68266 * 18 17 14 20 20 C 1.38275 * 120.14192 * 0.65124 * 19 18 17 21 21 C 1.38508 * 120.02954 * 359.63804 * 20 19 18 22 22 C 1.38507 * 119.98305 * 90.00088 * 17 14 13 23 23 O 1.36496 * 131.54164 * 0.02562 * 22 17 14 24 24 C 1.43987 * 105.48960 * 162.68282 * 23 22 17 25 25 O 1.36496 * 131.53729 * 180.02562 * 21 20 19 26 26 C 1.39311 * 120.36343 * 359.43993 * 12 11 10 27 27 C 1.36438 * 120.18632 * 0.55851 * 26 12 11 28 28 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.09598 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.90868 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.92722 * 0.02741 * 18 17 14 32 32 H 1.08000 * 119.93026 * 180.28757 * 19 18 17 33 33 H 1.08009 * 119.98928 * 179.66300 * 20 19 18 34 34 H 1.09002 * 110.57469 * 268.56870 * 24 23 22 35 35 H 1.08999 * 110.70200 * 145.74835 * 24 23 22 36 36 H 1.08003 * 119.90790 * 180.28102 * 26 12 11 37 37 H 1.07999 * 120.09909 * 179.70375 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2342 0.2875 9 6 1.3537 -2.4046 -0.3775 10 6 0.2246 -2.3575 -1.2179 11 6 -0.4024 -3.5148 -1.5771 12 6 0.0677 -4.7402 -1.1101 13 8 -0.5649 -5.8861 -1.4674 14 16 -0.0286 -6.5169 -2.7445 15 8 -0.9196 -7.5734 -3.0749 16 8 0.2668 -5.4442 -3.6285 17 6 1.5127 -7.2720 -2.3459 18 6 2.6862 -6.5497 -2.4604 19 6 3.8963 -7.1368 -2.1423 20 6 3.9400 -8.4531 -1.7212 21 6 2.7691 -9.1846 -1.6098 22 6 1.5487 -8.5906 -1.9236 23 8 0.5559 -9.5082 -1.7352 24 6 1.2165 -10.7870 -1.6963 25 8 2.5405 -10.4739 -1.2247 26 6 1.1874 -4.7960 -0.2831 27 6 1.8260 -3.6479 0.0854 28 1 -0.4850 0.8401 0.0004 29 1 -0.1439 -1.4080 -1.5771 30 1 -1.2682 -3.4805 -2.2219 31 1 2.6566 -5.5229 -2.7937 32 1 4.8104 -6.5681 -2.2286 33 1 4.8876 -8.9111 -1.4785 34 1 1.2592 -11.2266 -2.6929 35 1 0.7123 -11.4603 -1.0032 36 1 1.5483 -5.7503 0.0710 37 1 2.6910 -3.6925 0.7305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800892526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:10 Heat of formation + Delta-G solvation = -113.571107 kcal Electronic energy + Delta-G solvation = -28392.906535 eV Core-core repulsion = 24194.377117 eV Total energy + Delta-G solvation = -4198.529419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 6.55 seconds Orbital eigenvalues (eV) -42.32514 -39.82992 -37.93686 -37.01635 -36.70294 -36.35250 -35.35117 -33.80804 -31.07039 -30.10995 -29.94829 -29.52717 -25.98160 -25.52113 -23.59336 -23.08319 -21.95502 -21.44725 -19.72375 -18.67905 -18.20891 -17.72304 -17.66489 -17.21756 -16.68427 -16.60229 -16.01976 -15.51950 -14.75604 -14.64168 -14.43163 -14.23246 -14.17909 -13.70217 -13.17189 -13.09281 -13.01277 -12.60729 -12.50107 -12.30261 -12.19341 -12.14620 -11.99445 -11.55020 -11.45291 -11.43101 -11.32078 -11.14234 -11.02564 -10.73680 -10.45729 -10.16085 -9.66669 -9.42280 -9.36735 -8.22043 -7.92064 -7.68837 -7.15752 -4.72343 0.60010 0.93618 1.04286 2.37824 2.56305 2.78178 2.89161 2.93291 2.94209 3.13145 3.25241 3.42788 3.66297 4.14123 4.23047 4.33961 4.49227 4.62519 4.80258 4.93464 5.08957 5.18612 5.26427 5.33958 5.62624 5.78676 5.88403 5.96891 6.01708 6.15897 6.21784 6.28712 6.64577 6.68667 6.82510 6.90676 6.92924 7.22031 7.47413 7.66563 7.67771 7.86200 8.23387 8.46356 8.55519 9.76396 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003372 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.438429 B = 8300.576046 C = 9124.332458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.429 4.429 8 H 0.089 0.911 9 C 0.121 3.879 10 C -0.160 4.160 11 C -0.058 4.058 12 C -0.104 4.104 13 O -0.630 6.630 14 S 2.643 3.357 15 O -0.952 6.952 16 O -0.957 6.957 17 C -0.669 4.669 18 C -0.001 4.001 19 C -0.133 4.133 20 C -0.051 4.051 21 C 0.000 4.000 22 C 0.133 3.867 23 O -0.286 6.286 24 C 0.209 3.791 25 O -0.309 6.309 26 C -0.072 4.072 27 C -0.213 4.213 28 H 0.290 0.710 29 H 0.129 0.871 30 H 0.104 0.896 31 H 0.159 0.841 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.088 0.912 35 H 0.136 0.864 36 H 0.101 0.899 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.429 -10.705 -2.305 12.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.151 4.151 3 Si 0.741 3.259 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.457 4.457 8 H 0.107 0.893 9 C 0.117 3.883 10 C -0.180 4.180 11 C -0.079 4.079 12 C -0.150 4.150 13 O -0.590 6.590 14 S 2.738 3.262 15 O -0.950 6.950 16 O -0.955 6.955 17 C -0.751 4.751 18 C -0.020 4.020 19 C -0.152 4.152 20 C -0.069 4.069 21 C -0.045 4.045 22 C 0.086 3.914 23 O -0.201 6.201 24 C 0.097 3.903 25 O -0.225 6.225 26 C -0.093 4.093 27 C -0.234 4.234 28 H 0.101 0.899 29 H 0.147 0.853 30 H 0.122 0.878 31 H 0.177 0.823 32 H 0.165 0.835 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.153 0.847 36 H 0.119 0.881 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.401 -10.751 -2.459 12.281 hybrid contribution 0.762 -0.114 0.278 0.819 sum 6.163 -10.865 -2.181 12.680 Atomic orbital electron populations 1.69828 1.07887 1.30472 1.30652 1.26125 0.94900 1.02147 0.91933 0.86139 0.80453 0.79520 0.79809 1.18747 1.19943 1.18219 1.19852 0.98561 0.91100 1.36225 0.89284 1.17812 0.90654 0.92255 0.87548 1.20962 0.99200 0.96673 1.01153 1.20482 0.98422 0.91279 0.97739 1.17606 1.01948 0.80222 1.15232 1.85725 1.66543 1.45566 1.61191 1.04446 0.72991 0.73799 0.74996 1.93548 1.61757 1.57361 1.82339 1.93566 1.84685 1.52381 1.64867 1.30443 1.24258 1.01576 1.18813 1.20946 0.89893 0.99698 0.91423 1.21084 0.98905 0.93742 1.01448 1.20322 0.95288 0.93657 0.97674 1.19793 0.95064 0.85552 1.04042 1.19082 0.86214 0.91130 0.94929 1.87584 1.29536 1.15622 1.87329 1.25759 0.76607 0.86328 1.01611 1.87351 1.34102 1.26007 1.75070 1.20384 0.93970 0.98315 0.96625 1.20574 1.04000 0.91866 1.06913 0.89892 0.85290 0.87812 0.82344 0.83466 0.84241 0.89467 0.84653 0.88111 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.52 10.96 55.54 0.61 -16.91 16 2 C 0.07 1.56 5.13 -17.34 -0.09 1.47 16 3 Si 0.92 16.28 29.60 -169.99 -5.03 11.25 16 4 H -0.26 -4.66 7.11 56.52 0.40 -4.25 16 5 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 16 7 C -0.43 -9.86 9.04 -37.83 -0.34 -10.20 16 8 H 0.09 1.91 7.91 -52.48 -0.41 1.49 16 9 C 0.12 2.87 5.57 -106.81 -0.60 2.28 16 10 C -0.16 -3.84 8.64 -39.25 -0.34 -4.17 16 11 C -0.06 -1.36 9.12 -39.83 -0.36 -1.72 16 12 C -0.10 -2.35 4.83 -38.78 -0.19 -2.54 16 13 O -0.63 -13.66 10.14 -50.87 -0.52 -14.17 16 14 S 2.64 53.65 5.42 -107.50 -0.58 53.06 16 15 O -0.95 -20.82 16.81 -69.08 -1.16 -21.98 16 16 O -0.96 -20.62 15.58 -66.81 -1.04 -21.66 16 17 C -0.67 -11.74 5.24 -39.47 -0.21 -11.95 16 18 C 0.00 -0.01 8.40 -39.58 -0.33 -0.35 16 19 C -0.13 -1.61 10.04 -39.58 -0.40 -2.01 16 20 C -0.05 -0.61 10.06 -39.47 -0.40 -1.00 16 21 C 0.00 0.00 7.15 -39.09 -0.28 -0.28 16 22 C 0.13 2.24 6.71 -39.09 -0.26 1.98 16 23 O -0.29 -4.69 10.46 -50.83 -0.53 -5.22 16 24 C 0.21 2.34 8.89 101.05 0.90 3.24 16 25 O -0.31 -4.04 11.40 -45.67 -0.52 -4.56 16 26 C -0.07 -1.51 8.29 -39.83 -0.33 -1.84 16 27 C -0.21 -4.60 9.74 -39.25 -0.38 -4.98 16 28 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 29 H 0.13 3.13 6.16 -52.49 -0.32 2.80 16 30 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 31 H 0.16 2.41 7.61 -52.48 -0.40 2.02 16 32 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.14 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.90 7.90 -52.48 -0.41 1.48 16 37 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 334.94 15.07 5.05 5.05 Total: -1.00 -29.90 334.94 -10.56 -40.46 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.22 Total: 6.75 kcal Atomic # 6 Polarization: -28.47 SS G_CDS: -3.61 Total: -32.07 kcal Atomic # 7 Polarization: -17.52 SS G_CDS: 0.61 Total: -16.91 kcal Atomic # 8 Polarization: -63.83 SS G_CDS: -3.77 Total: -67.60 kcal Atomic # 14 Polarization: 16.28 SS G_CDS: -5.03 Total: 11.25 kcal Atomic # 16 Polarization: 53.65 SS G_CDS: -0.58 Total: 53.06 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.90 -10.56 -40.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800892526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.109 kcal (2) G-P(sol) polarization free energy of solvation -29.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.56 seconds