Wall clock time and date at job start Wed Apr 1 2020 04:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86803 * 120.00058 * 2 1 4 4 H 1.48507 * 109.47341 * 270.00339 * 3 2 1 5 5 H 1.48504 * 109.47207 * 30.00054 * 3 2 1 6 6 H 1.48495 * 109.47455 * 150.00150 * 3 2 1 7 7 C 1.39888 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99712 * 197.93369 * 7 2 1 9 9 C 1.41217 * 120.00226 * 17.92863 * 7 2 1 10 10 C 1.40833 * 120.17634 * 24.54833 * 9 7 2 11 11 C 1.36434 * 119.81229 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18388 * 0.28410 * 11 10 9 13 13 O 1.35679 * 119.82012 * 179.72146 * 12 11 10 14 14 S 1.52199 * 113.99803 * 89.99892 * 13 12 11 15 15 O 1.42103 * 106.40213 * 188.54209 * 14 13 12 16 16 O 1.42104 * 106.40211 * 321.46017 * 14 13 12 17 17 C 1.76198 * 107.21954 * 75.00013 * 14 13 12 18 18 C 1.38276 * 119.98800 * 269.72010 * 17 14 13 19 19 C 1.38207 * 120.14409 * 179.68266 * 18 17 14 20 20 C 1.38275 * 120.14192 * 0.65124 * 19 18 17 21 21 C 1.38508 * 120.02954 * 359.63804 * 20 19 18 22 22 C 1.38507 * 119.98305 * 90.00088 * 17 14 13 23 23 O 1.36496 * 131.54164 * 0.02562 * 22 17 14 24 24 C 1.43987 * 105.48960 * 162.68282 * 23 22 17 25 25 O 1.36496 * 131.53729 * 180.02562 * 21 20 19 26 26 C 1.39311 * 120.36343 * 359.43993 * 12 11 10 27 27 C 1.36438 * 120.18632 * 0.55851 * 26 12 11 28 28 H 0.97005 * 119.99879 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.09598 * 0.02562 * 10 9 7 30 30 H 1.08000 * 119.90868 * 180.02562 * 11 10 9 31 31 H 1.08004 * 119.92722 * 0.02741 * 18 17 14 32 32 H 1.08000 * 119.93026 * 180.28757 * 19 18 17 33 33 H 1.08009 * 119.98928 * 179.66300 * 20 19 18 34 34 H 1.09002 * 110.57469 * 268.56870 * 24 23 22 35 35 H 1.08999 * 110.70200 * 145.74835 * 24 23 22 36 36 H 1.08003 * 119.90790 * 180.28102 * 26 12 11 37 37 H 1.07999 * 120.09909 * 179.70375 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4903 2.0465 -1.4001 5 1 1.4403 2.6527 0.7001 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 -0.0005 8 1 3.0490 -1.2342 0.2875 9 6 1.3537 -2.4046 -0.3775 10 6 0.2246 -2.3575 -1.2179 11 6 -0.4024 -3.5148 -1.5771 12 6 0.0677 -4.7402 -1.1101 13 8 -0.5649 -5.8861 -1.4674 14 16 -0.0286 -6.5169 -2.7445 15 8 -0.9196 -7.5734 -3.0749 16 8 0.2668 -5.4442 -3.6285 17 6 1.5127 -7.2720 -2.3459 18 6 2.6862 -6.5497 -2.4604 19 6 3.8963 -7.1368 -2.1423 20 6 3.9400 -8.4531 -1.7212 21 6 2.7691 -9.1846 -1.6098 22 6 1.5487 -8.5906 -1.9236 23 8 0.5559 -9.5082 -1.7352 24 6 1.2165 -10.7870 -1.6963 25 8 2.5405 -10.4739 -1.2247 26 6 1.1874 -4.7960 -0.2831 27 6 1.8260 -3.6479 0.0854 28 1 -0.4850 0.8401 0.0004 29 1 -0.1439 -1.4080 -1.5771 30 1 -1.2682 -3.4805 -2.2219 31 1 2.6566 -5.5229 -2.7937 32 1 4.8104 -6.5681 -2.2286 33 1 4.8876 -8.9111 -1.4785 34 1 1.2592 -11.2266 -2.6929 35 1 0.7123 -11.4603 -1.0032 36 1 1.5483 -5.7503 0.0710 37 1 2.6910 -3.6925 0.7305 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800892526.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:05 Heat of formation + Delta-G solvation = -131.986569 kcal Electronic energy + Delta-G solvation = -28393.705090 eV Core-core repulsion = 24194.377117 eV Total energy + Delta-G solvation = -4199.327973 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.059 amu Computer time = 5.27 seconds Orbital eigenvalues (eV) -43.35410 -41.53127 -39.02835 -38.72588 -38.28606 -37.47685 -37.02927 -35.49639 -32.21860 -31.69735 -31.29395 -31.08292 -27.24590 -26.89418 -24.76748 -24.15816 -23.65181 -23.18137 -21.32751 -20.02112 -19.43489 -19.28684 -18.90818 -18.66239 -18.20532 -17.78047 -17.32426 -16.99888 -16.22854 -15.98449 -15.81995 -15.70252 -15.35835 -14.84907 -14.69431 -14.25455 -14.19964 -14.08581 -13.94781 -13.87035 -13.79208 -13.63133 -13.28827 -13.22149 -13.13701 -13.07440 -12.81689 -12.59250 -12.35509 -12.09311 -11.78305 -11.73205 -11.35099 -11.09344 -10.47462 -9.68997 -9.46024 -9.25738 -8.80824 -6.47656 -0.75559 -0.42717 -0.03748 0.68645 1.02635 1.44167 1.50779 1.57117 1.58737 1.62036 2.18145 2.25144 2.32455 2.55666 2.60428 3.15313 3.39471 3.54432 3.70141 3.81869 4.04445 4.08571 4.13883 4.21309 4.25650 4.28907 4.46683 4.58256 4.75904 4.94208 4.98280 5.02349 5.08758 5.13261 5.19046 5.30567 5.49067 5.74929 5.87873 5.89742 5.94101 6.11094 6.49243 6.72928 6.81282 8.14535 Molecular weight = 348.06amu Principal moments of inertia in cm(-1) A = 0.019340 B = 0.003372 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.438429 B = 8300.576046 C = 9124.332458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.033 3.967 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.451 4.451 8 H 0.102 0.898 9 C 0.098 3.902 10 C -0.179 4.179 11 C -0.074 4.074 12 C -0.116 4.116 13 O -0.644 6.644 14 S 2.655 3.345 15 O -0.976 6.976 16 O -0.978 6.978 17 C -0.684 4.684 18 C -0.018 4.018 19 C -0.116 4.116 20 C -0.034 4.034 21 C -0.002 4.002 22 C 0.107 3.893 23 O -0.318 6.318 24 C 0.198 3.802 25 O -0.309 6.309 26 C -0.065 4.065 27 C -0.214 4.214 28 H 0.297 0.703 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.151 0.849 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.110 0.890 35 H 0.170 0.830 36 H 0.124 0.876 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.668 -11.571 -1.476 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.186 4.186 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.172 1.172 7 C -0.479 4.479 8 H 0.120 0.880 9 C 0.093 3.907 10 C -0.199 4.199 11 C -0.095 4.095 12 C -0.161 4.161 13 O -0.604 6.604 14 S 2.753 3.247 15 O -0.974 6.974 16 O -0.977 6.977 17 C -0.771 4.771 18 C -0.037 4.037 19 C -0.134 4.134 20 C -0.052 4.052 21 C -0.047 4.047 22 C 0.060 3.940 23 O -0.234 6.234 24 C 0.088 3.912 25 O -0.226 6.226 26 C -0.085 4.085 27 C -0.234 4.234 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.122 0.878 31 H 0.169 0.831 32 H 0.206 0.794 33 H 0.200 0.800 34 H 0.128 0.872 35 H 0.187 0.813 36 H 0.142 0.858 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.590 -11.598 -1.628 14.524 hybrid contribution -0.220 -0.037 0.004 0.223 sum 8.370 -11.635 -1.624 14.425 Atomic orbital electron populations 1.69878 1.09464 1.31829 1.31031 1.27009 0.95481 1.05296 0.90846 0.85059 0.79285 0.74972 0.79717 1.18663 1.19523 1.17182 1.20195 0.99261 0.91607 1.36808 0.87998 1.18142 0.90852 0.93702 0.87956 1.20927 1.00325 0.96293 1.02370 1.20625 0.98782 0.91898 0.98211 1.17734 1.02487 0.80087 1.15819 1.85648 1.67621 1.45424 1.61680 1.03486 0.73733 0.73222 0.74218 1.93508 1.63665 1.57652 1.82580 1.93535 1.85351 1.53431 1.65379 1.29843 1.22855 1.02457 1.21927 1.21073 0.90623 0.99588 0.92399 1.21536 0.98880 0.93965 0.99021 1.20879 0.96120 0.93148 0.95095 1.20099 0.94891 0.86003 1.03742 1.19282 0.87567 0.91127 0.95977 1.87534 1.30985 1.17354 1.87526 1.26329 0.75918 0.84902 1.04074 1.87335 1.34832 1.25246 1.75192 1.20549 0.93089 0.99229 0.95679 1.20820 1.04601 0.91153 1.06822 0.89145 0.86511 0.87797 0.83089 0.79412 0.80002 0.87223 0.81273 0.85812 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.25 10.96 21.82 0.24 -37.01 16 2 C 0.03 1.44 5.13 85.23 0.44 1.88 16 3 Si 0.99 32.65 29.60 68.60 2.03 34.68 16 4 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 5 H -0.27 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.25 -7.75 7.11 99.48 0.71 -7.05 16 7 C -0.45 -20.67 9.04 23.40 0.21 -20.46 16 8 H 0.10 4.25 7.91 -2.91 -0.02 4.23 16 9 C 0.10 4.68 5.57 -21.28 -0.12 4.56 16 10 C -0.18 -8.96 8.64 22.48 0.19 -8.76 16 11 C -0.07 -3.63 9.12 22.11 0.20 -3.43 16 12 C -0.12 -5.38 4.83 22.79 0.11 -5.27 16 13 O -0.64 -28.93 10.14 -59.25 -0.60 -29.53 16 14 S 2.65 111.54 5.42 -56.49 -0.31 111.23 16 15 O -0.98 -44.35 16.81 -116.61 -1.96 -46.31 16 16 O -0.98 -44.05 15.58 -118.78 -1.85 -45.90 16 17 C -0.68 -23.83 5.24 22.34 0.12 -23.71 16 18 C -0.02 -0.52 8.40 22.27 0.19 -0.33 16 19 C -0.12 -2.35 10.04 22.27 0.22 -2.12 16 20 C -0.03 -0.66 10.06 22.34 0.22 -0.44 16 21 C 0.00 -0.06 7.15 22.59 0.16 0.10 16 22 C 0.11 3.51 6.71 22.59 0.15 3.66 16 23 O -0.32 -10.30 10.46 -71.07 -0.74 -11.04 16 24 C 0.20 4.03 8.89 113.37 1.01 5.04 16 25 O -0.31 -7.22 11.40 -76.00 -0.87 -8.08 16 26 C -0.07 -2.71 8.29 22.11 0.18 -2.53 16 27 C -0.21 -9.11 9.74 22.48 0.22 -8.89 16 28 H 0.30 12.43 8.30 -92.70 -0.77 11.66 16 29 H 0.12 5.99 6.16 -2.91 -0.02 5.97 16 30 H 0.10 4.85 8.06 -2.91 -0.02 4.83 16 31 H 0.15 4.56 7.61 -2.91 -0.02 4.54 16 32 H 0.19 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.17 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.12 4.51 7.90 -2.91 -0.02 4.49 16 37 H 0.13 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -67.53 334.94 0.59 -66.94 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: 1.13 Total: 25.72 kcal Atomic # 6 Polarization: -64.21 SS G_CDS: 3.51 Total: -60.69 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.24 Total: -37.01 kcal Atomic # 8 Polarization: -134.84 SS G_CDS: -6.02 Total: -140.86 kcal Atomic # 14 Polarization: 32.65 SS G_CDS: 2.03 Total: 34.68 kcal Atomic # 16 Polarization: 111.54 SS G_CDS: -0.31 Total: 111.23 kcal Total: -67.53 0.59 -66.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800892526.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.045 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.27 seconds