Wall clock time and date at job start Wed Apr 1 2020 04:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86799 * 120.00126 * 2 1 4 4 H 1.48502 * 109.47231 * 270.00244 * 3 2 1 5 5 H 1.48502 * 109.47141 * 30.00071 * 3 2 1 6 6 H 1.48498 * 109.47328 * 150.00049 * 3 2 1 7 7 C 1.38945 * 120.00294 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00870 * 180.02562 * 7 2 1 9 9 N 1.37108 * 119.99796 * 359.97438 * 7 2 1 10 10 C 1.34778 * 119.99654 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00341 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99586 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46948 * 179.97438 * 12 10 9 14 14 C 1.34774 * 119.99799 * 180.02562 * 13 12 10 15 15 O 1.21617 * 120.00006 * 359.97438 * 14 13 12 16 16 C 1.47388 * 120.00277 * 179.97438 * 14 13 12 17 17 C 1.39751 * 120.21027 * 0.02562 * 16 14 13 18 18 C 1.37735 * 119.92972 * 179.97438 * 17 16 14 19 19 C 1.38649 * 120.36949 * 0.02562 * 18 17 16 20 20 C 1.37908 * 120.43672 * 359.97438 * 19 18 17 21 21 C 1.39042 * 120.05865 * 359.97438 * 20 19 18 22 22 S 1.76192 * 120.18360 * 180.02562 * 21 20 19 23 23 C 1.81404 * 103.00168 * 359.97438 * 22 21 20 24 24 F 1.39901 * 109.46588 * 60.00013 * 23 22 21 25 25 F 1.39905 * 109.47013 * 179.97438 * 23 22 21 26 26 F 1.39892 * 109.46879 * 300.00235 * 23 22 21 27 27 H 0.96993 * 119.99725 * 359.97438 * 1 2 3 28 28 H 0.96994 * 119.99639 * 0.02562 * 9 7 2 29 29 H 1.09001 * 109.47206 * 59.99781 * 12 10 9 30 30 H 1.08996 * 109.46975 * 300.00176 * 12 10 9 31 31 H 0.96998 * 119.99806 * 359.97438 * 13 12 10 32 32 H 1.07998 * 120.03395 * 0.25160 * 17 16 14 33 33 H 1.08002 * 119.80890 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.77685 * 179.97438 * 19 18 17 35 35 H 1.07999 * 119.96936 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2034 -0.0001 9 7 1.3234 -2.3907 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0011 13 7 2.1959 -5.9765 -0.0016 14 6 1.7466 -7.2471 -0.0027 15 8 0.5509 -7.4693 -0.0028 16 6 2.7043 -8.3674 -0.0038 17 6 4.0793 -8.1172 -0.0031 18 6 4.9691 -9.1685 -0.0036 19 6 4.5089 -10.4764 -0.0053 20 6 3.1554 -10.7407 -0.0059 21 6 2.2412 -9.6931 -0.0044 22 16 0.5112 -10.0271 -0.0045 23 6 0.4456 -11.8399 -0.0077 24 9 1.0880 -12.3317 1.1336 25 9 -0.8895 -12.2582 -0.0075 26 9 1.0875 -12.3278 -1.1509 27 1 -0.4849 0.8400 0.0004 28 1 0.3535 -2.3906 -0.0005 29 1 0.6175 -4.9205 -0.8913 30 1 0.6169 -4.9209 0.8886 31 1 3.1495 -5.7991 -0.0019 32 1 4.4436 -7.1005 0.0023 33 1 6.0313 -8.9728 -0.0035 34 1 5.2152 -11.2935 -0.0060 35 1 2.8053 -11.7624 -0.0068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804820984.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:38 Heat of formation + Delta-G solvation = -195.750140 kcal Electronic energy + Delta-G solvation = -26980.354211 eV Core-core repulsion = 22268.697253 eV Total energy + Delta-G solvation = -4711.656958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.054 amu Computer time = 6.45 seconds Orbital eigenvalues (eV) -51.39886 -49.01156 -48.92776 -41.53762 -40.22280 -39.28983 -36.32864 -35.51035 -33.40740 -32.64311 -32.33086 -29.32678 -27.66948 -26.62589 -24.83649 -23.93903 -21.92951 -21.46078 -20.54565 -20.20315 -19.94660 -19.80392 -19.22536 -18.10219 -17.41446 -17.22612 -16.88473 -16.66088 -16.16162 -15.94311 -15.87104 -15.79287 -15.73489 -15.64098 -15.52522 -15.35688 -15.07258 -15.06301 -14.53153 -14.17415 -14.15720 -13.94459 -13.54691 -13.54545 -12.90932 -12.87987 -12.46082 -12.41623 -12.17836 -12.11526 -11.57113 -11.24279 -10.84755 -10.58034 -10.47023 -10.15985 -10.08954 -9.05511 -8.51349 -6.01546 -0.94883 -0.47323 0.01418 0.45844 1.36475 1.43576 1.55718 1.61885 1.84672 1.89847 1.91588 2.30103 2.56669 2.73923 2.75409 3.07742 3.16160 3.44245 3.52336 3.90444 4.11687 4.16987 4.23534 4.34618 4.39446 4.42858 4.65208 4.86633 5.08087 5.15574 5.28990 5.38412 5.66054 5.90883 6.29211 6.47200 6.88420 7.03114 7.43234 7.92771 8.65468 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.002221 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.259239 B =12603.298933 C =13682.765448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.996 3.004 4 H -0.270 1.270 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.088 0.912 9 N -0.558 5.558 10 C 0.433 3.567 11 O -0.622 6.622 12 C 0.120 3.880 13 N -0.693 5.693 14 C 0.550 3.450 15 O -0.546 6.546 16 C -0.129 4.129 17 C -0.066 4.066 18 C -0.109 4.109 19 C -0.057 4.057 20 C -0.140 4.140 21 C -0.079 4.079 22 S 0.059 5.941 23 C 0.402 3.598 24 F -0.172 7.172 25 F -0.156 7.156 26 F -0.172 7.172 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.416 0.584 32 H 0.149 0.851 33 H 0.173 0.827 34 H 0.174 0.826 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.472 -23.285 -0.011 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.198 1.198 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.106 0.894 9 N -0.194 5.194 10 C 0.220 3.780 11 O -0.511 6.511 12 C -0.008 4.008 13 N -0.346 5.346 14 C 0.338 3.662 15 O -0.429 6.429 16 C -0.139 4.139 17 C -0.086 4.086 18 C -0.128 4.128 19 C -0.077 4.077 20 C -0.163 4.163 21 C -0.193 4.193 22 S 0.295 5.705 23 C 0.243 3.757 24 F -0.154 7.154 25 F -0.138 7.138 26 F -0.153 7.153 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.117 0.883 30 H 0.117 0.883 31 H 0.256 0.744 32 H 0.167 0.833 33 H 0.191 0.809 34 H 0.191 0.809 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.203 -22.632 -0.005 23.222 hybrid contribution 0.756 0.019 -0.010 0.756 sum 5.960 -22.612 -0.015 23.385 Atomic orbital electron populations 1.69677 1.07032 1.29653 1.49253 1.26123 0.96508 1.02703 0.95780 0.84878 0.77965 0.76524 0.78707 1.19579 1.19799 1.19323 1.19742 0.93006 0.83456 1.50331 0.89399 1.41844 1.09634 1.04618 1.63267 1.20335 0.88120 0.85809 0.83718 1.90468 1.15023 1.87480 1.58089 1.20865 0.91538 0.83602 1.04766 1.45470 1.11779 1.04031 1.73321 1.18446 0.88121 0.83212 0.76379 1.90616 1.17036 1.82717 1.52501 1.19414 0.94822 0.89901 1.09719 1.21649 0.90213 1.01821 0.94922 1.21668 1.01831 0.91394 0.97940 1.21727 0.94251 0.98585 0.93148 1.21515 0.94648 0.97279 1.02908 1.21921 0.96130 0.96266 1.04994 1.88678 1.02822 0.87866 1.91101 1.24471 0.75746 1.00017 0.75488 1.93273 1.81248 1.90327 1.50503 1.93219 1.33327 1.91026 1.96218 1.93271 1.81263 1.90450 1.50357 0.91075 0.76681 0.88279 0.88270 0.74353 0.83338 0.80922 0.80896 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -47.86 13.05 21.66 0.28 -47.58 16 2 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 3 Si 1.00 40.83 29.55 68.60 2.03 42.86 16 4 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 6 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 7 C -0.34 -18.00 9.68 84.04 0.81 -17.18 16 8 H 0.09 4.94 7.16 -2.91 -0.02 4.91 16 9 N -0.56 -27.10 5.29 -306.98 -1.62 -28.72 16 10 C 0.43 19.04 7.85 87.66 0.69 19.73 16 11 O -0.62 -30.46 15.24 -3.05 -0.05 -30.51 16 12 C 0.12 4.12 6.15 85.64 0.53 4.64 16 13 N -0.69 -21.38 5.48 -470.14 -2.58 -23.95 16 14 C 0.55 16.64 7.75 86.65 0.67 17.31 16 15 O -0.55 -18.98 13.77 -4.09 -0.06 -19.04 16 16 C -0.13 -3.17 5.89 -19.97 -0.12 -3.29 16 17 C -0.07 -1.20 9.53 22.52 0.21 -0.98 16 18 C -0.11 -1.31 10.02 22.25 0.22 -1.09 16 19 C -0.06 -0.68 10.02 22.29 0.22 -0.46 16 20 C -0.14 -2.49 8.68 22.38 0.19 -2.29 16 21 C -0.08 -1.85 6.15 23.00 0.14 -1.71 16 22 S 0.06 1.51 18.86 -56.49 -1.07 0.44 16 23 C 0.40 8.78 2.98 113.37 0.34 9.11 16 24 F -0.17 -3.56 15.63 44.97 0.70 -2.86 16 25 F -0.16 -3.52 17.36 44.97 0.78 -2.74 16 26 F -0.17 -3.56 15.63 44.97 0.70 -2.86 16 27 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 28 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 29 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 30 H 0.10 3.23 8.14 -2.39 -0.02 3.22 16 31 H 0.42 12.25 5.47 -92.71 -0.51 11.74 16 32 H 0.15 2.45 6.40 -2.91 -0.02 2.44 16 33 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.14 2.25 4.57 -2.91 -0.01 2.23 16 Total: -1.00 -64.76 333.60 3.49 -61.27 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: -0.03 Total: 29.96 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: 4.38 Total: 23.73 kcal Atomic # 7 Polarization: -96.33 SS G_CDS: -3.92 Total: -100.25 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.10 Total: -49.55 kcal Atomic # 9 Polarization: -10.65 SS G_CDS: 2.19 Total: -8.46 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -1.07 Total: 0.44 kcal Total: -64.76 3.49 -61.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804820984.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.477 kcal (2) G-P(sol) polarization free energy of solvation -64.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.46 seconds