Wall clock time and date at job start Wed Apr 1 2020 05:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36544 * 125.98312 * 259.17808 * 3 2 1 5 5 C 1.40477 * 106.70606 * 179.97438 * 4 3 2 6 6 C 1.35050 * 107.10933 * 0.02562 * 5 4 3 7 7 S 1.76201 * 125.61897 * 180.02562 * 6 5 4 8 8 O 1.42096 * 106.40374 * 203.53696 * 7 6 5 9 9 O 1.42098 * 106.40169 * 336.46268 * 7 6 5 10 10 N 1.65606 * 107.21618 * 90.00017 * 7 6 5 11 11 C 1.46494 * 119.99867 * 64.99863 * 10 7 6 12 12 C 1.50707 * 109.46997 * 165.00164 * 11 10 7 13 13 C 1.38302 * 119.92807 * 269.72942 * 12 11 10 14 14 C 1.38101 * 120.06911 * 179.72235 * 13 12 11 15 15 C 1.38881 * 119.92653 * 0.57197 * 14 13 12 16 16 O 1.35749 * 120.07010 * 179.68113 * 15 14 13 17 17 C 1.34835 * 117.00116 * 174.48747 * 16 15 14 18 18 H 1.07994 * 119.99855 * 5.05568 * 17 16 15 19 19 C 1.38652 * 119.99890 * 185.05742 * 17 16 15 20 20 N 1.31559 * 119.99910 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47146 * 89.99504 * 21 19 17 23 23 H 1.48499 * 109.47370 * 210.00364 * 21 19 17 24 24 H 1.48510 * 109.46719 * 329.99705 * 21 19 17 25 25 C 1.38884 * 119.86132 * 359.70202 * 15 14 13 26 26 C 1.38094 * 119.93256 * 0.02562 * 25 15 14 27 27 O 1.34047 * 108.76547 * 359.97438 * 6 5 4 28 28 H 1.08005 * 126.65022 * 0.23985 * 4 3 2 29 29 H 1.07998 * 126.44835 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00052 * 245.00676 * 10 7 6 31 31 H 1.09001 * 109.47308 * 285.00112 * 11 10 7 32 32 H 1.09004 * 109.47127 * 45.00271 * 11 10 7 33 33 H 1.08006 * 119.96804 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.03629 * 180.27122 * 14 13 12 35 35 H 0.97000 * 120.00087 * 180.02562 * 20 19 17 36 36 H 1.08005 * 120.02904 * 179.97438 * 25 15 14 37 37 H 1.08001 * 119.96622 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3702 0.2085 1.0853 5 6 4.6962 0.1214 0.6298 6 6 4.6453 -0.1318 -0.6957 7 16 6.0379 -0.3350 -1.7559 8 8 5.5897 -0.0316 -3.0698 9 8 7.1209 0.3383 -1.1292 10 7 6.4244 -1.9453 -1.7541 11 6 5.4861 -2.9245 -2.3080 12 6 6.1982 -4.2345 -2.5273 13 6 6.8137 -4.4909 -3.7390 14 6 7.4720 -5.6880 -3.9410 15 6 7.5054 -6.6396 -2.9301 16 8 8.1461 -7.8199 -3.1278 17 6 8.2392 -8.6507 -2.0699 18 1 7.7443 -8.4020 -1.1429 19 6 8.9703 -9.8244 -2.1724 20 7 9.5727 -10.1276 -3.3020 21 14 9.0998 -10.9750 -0.7067 22 1 7.9867 -11.9571 -0.7484 23 1 10.3976 -11.6952 -0.7558 24 1 9.0182 -10.1874 0.5497 25 6 6.8815 -6.3813 -1.7164 26 6 6.2297 -5.1801 -1.5186 27 8 3.3607 -0.2041 -1.0719 28 1 3.0477 0.3983 2.0984 29 1 5.5886 0.2354 1.2273 30 1 7.2721 -2.2402 -1.3861 31 1 4.6610 -3.0717 -1.6111 32 1 5.0979 -2.5584 -3.2585 33 1 6.7830 -3.7525 -4.5266 34 1 7.9562 -5.8859 -4.8859 35 1 10.0839 -10.9488 -3.3738 36 1 6.9054 -7.1196 -0.9285 37 1 5.7440 -4.9788 -0.5752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804985948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:13 Heat of formation + Delta-G solvation = -14.944089 kcal Electronic energy + Delta-G solvation = -26217.963779 eV Core-core repulsion = 22056.003900 eV Total energy + Delta-G solvation = -4161.959879 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -43.41862 -39.24002 -37.67720 -37.31976 -37.15047 -36.26428 -34.85045 -34.01622 -32.39250 -31.11086 -30.32447 -29.62855 -25.86727 -24.65479 -24.56469 -22.90173 -22.10607 -20.78014 -20.23238 -19.92191 -18.53275 -18.10248 -17.85683 -17.24364 -16.88448 -16.37221 -15.22364 -15.16746 -14.89880 -14.62114 -14.45507 -14.22787 -14.08791 -14.06752 -13.85160 -13.79385 -13.66947 -13.18868 -13.15576 -12.85490 -12.71833 -12.54361 -12.42101 -12.27888 -12.00749 -11.75685 -11.38091 -10.93538 -10.90195 -10.81786 -10.77333 -10.52015 -9.84926 -9.71474 -9.45461 -8.95200 -8.32867 -7.37416 -6.56566 -4.15313 -0.27239 0.02196 1.29890 1.35537 2.02487 2.09292 2.25390 2.58982 2.73269 3.05963 3.06866 3.11726 3.26163 3.42249 3.87093 4.01558 4.20031 4.42931 4.59377 4.70831 4.85887 4.93472 4.98232 5.14400 5.21184 5.41249 5.45598 5.58119 5.70538 5.82267 5.91573 6.08612 6.28918 6.55624 6.57240 6.74468 6.75966 6.93368 7.11122 7.21121 7.31190 7.67158 7.87865 8.88574 9.56479 10.60774 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002207 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.805860 B =12681.366287 C =13418.655206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C 0.283 3.717 3 C 0.089 3.911 4 C -0.142 4.142 5 C -0.090 4.090 6 C -0.540 4.540 7 S 2.714 3.286 8 O -0.932 6.932 9 O -0.935 6.935 10 N -1.096 6.096 11 C 0.173 3.827 12 C -0.208 4.208 13 C -0.052 4.052 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.040 3.960 20 N -0.858 5.858 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.238 4.238 26 C -0.052 4.052 27 O -0.097 6.097 28 H 0.176 0.824 29 H 0.181 0.819 30 H 0.426 0.574 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.272 0.728 36 H 0.128 0.872 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 18.606 8.831 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.033 5.033 2 C -0.034 4.034 3 C 0.032 3.968 4 C -0.165 4.165 5 C -0.110 4.110 6 C -0.669 4.669 7 S 2.794 3.206 8 O -0.922 6.922 9 O -0.925 6.925 10 N -0.861 5.861 11 C 0.048 3.952 12 C -0.211 4.211 13 C -0.071 4.071 14 C -0.214 4.214 15 C 0.106 3.894 16 O -0.074 6.074 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.492 5.492 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.257 4.257 26 C -0.071 4.071 27 O 0.011 5.989 28 H 0.193 0.807 29 H 0.199 0.801 30 H 0.263 0.737 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.082 0.918 36 H 0.146 0.854 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.099 18.988 7.716 22.849 hybrid contribution 0.327 -0.985 1.693 1.985 sum -9.772 18.004 9.409 22.542 Atomic orbital electron populations 1.81385 1.10276 1.06997 1.04641 1.23437 0.89448 0.94899 0.95570 1.17152 0.85019 1.07350 0.87255 1.22151 0.91601 1.03060 0.99705 1.21971 0.99450 0.96813 0.92796 1.36675 0.98679 1.19095 1.12486 1.02077 0.72009 0.73018 0.73546 1.93633 1.81861 1.82828 1.33868 1.93673 1.48407 1.72439 1.77965 1.55741 1.29558 1.24674 1.76114 1.20089 0.89744 0.86845 0.98479 1.19019 1.09838 0.95928 0.96350 1.20578 0.95056 0.95584 0.95903 1.20238 1.07485 0.94026 0.99662 1.19461 0.90593 0.86491 0.92891 1.83981 1.64138 1.22231 1.37074 1.21356 1.33293 1.00748 0.91560 0.88885 1.25329 0.95406 0.97256 0.98495 1.70035 1.29897 1.24470 1.24776 0.85689 0.78268 0.79611 0.79742 1.19803 1.20166 1.19126 1.21148 1.06073 0.99325 0.99153 1.20618 0.96558 0.92822 0.97066 1.84288 1.14035 1.67594 1.32933 0.80684 0.80126 0.73741 0.91666 0.89769 0.86600 0.86292 0.91823 0.85421 0.87344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.36 -3.66 18.54 41.84 0.78 -2.89 16 2 C 0.28 2.41 15.88 -22.47 -0.36 2.05 16 3 C 0.09 0.68 7.08 -38.27 -0.27 0.41 16 4 C -0.14 -0.78 10.84 -39.35 -0.43 -1.21 16 5 C -0.09 -0.56 10.59 -39.87 -0.42 -0.98 16 6 C -0.54 -4.48 7.32 29.60 0.22 -4.26 16 7 S 2.71 25.57 5.89 -107.50 -0.63 24.94 16 8 O -0.93 -11.77 17.49 -57.25 -1.00 -12.77 16 9 O -0.94 -10.26 17.83 -57.17 -1.02 -11.28 16 10 N -1.10 -10.02 5.99 -11.65 -0.07 -10.09 16 11 C 0.17 1.83 6.35 -5.19 -0.03 1.80 16 12 C -0.21 -2.96 5.28 -104.57 -0.55 -3.51 16 13 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 14 C -0.19 -3.75 9.99 -39.39 -0.39 -4.15 16 15 C 0.16 3.58 6.65 -39.10 -0.26 3.32 16 16 O -0.17 -4.64 9.76 0.04 0.00 -4.64 16 17 C -0.39 -10.41 9.49 30.89 0.29 -10.12 16 18 H 0.09 2.25 5.20 -52.49 -0.27 1.98 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 20 N -0.86 -24.19 13.67 55.48 0.76 -23.44 16 21 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 C -0.24 -4.62 9.17 -39.40 -0.36 -4.98 16 26 C -0.05 -0.80 9.69 -39.61 -0.38 -1.18 16 27 O -0.10 -0.90 10.67 4.80 0.05 -0.85 16 28 H 0.18 0.42 8.06 -52.48 -0.42 -0.01 16 29 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.43 3.55 8.64 -34.48 -0.30 3.25 16 31 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 32 H 0.08 0.86 7.69 -51.93 -0.40 0.46 16 33 H 0.12 1.54 8.06 -52.48 -0.42 1.11 16 34 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.13 2.51 5.64 -52.48 -0.30 2.21 16 37 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 358.07 15.07 5.40 5.40 Total: -1.00 -33.40 358.07 -7.13 -40.53 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -2.94 Total: 3.61 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -3.43 Total: -23.05 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: 1.46 Total: -36.41 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.97 Total: -29.54 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 16 Polarization: 25.57 SS G_CDS: -0.63 Total: 24.94 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.40 -7.13 -40.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804985948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.590 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds