Wall clock time and date at job start Wed Apr 1 2020 05:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.36544 * 125.98312 * 259.17808 * 3 2 1 5 5 C 1.40477 * 106.70606 * 179.97438 * 4 3 2 6 6 C 1.35050 * 107.10933 * 0.02562 * 5 4 3 7 7 S 1.76201 * 125.61897 * 180.02562 * 6 5 4 8 8 O 1.42096 * 106.40374 * 203.53696 * 7 6 5 9 9 O 1.42098 * 106.40169 * 336.46268 * 7 6 5 10 10 N 1.65606 * 107.21618 * 90.00017 * 7 6 5 11 11 C 1.46494 * 119.99867 * 64.99863 * 10 7 6 12 12 C 1.50707 * 109.46997 * 165.00164 * 11 10 7 13 13 C 1.38302 * 119.92807 * 269.72942 * 12 11 10 14 14 C 1.38101 * 120.06911 * 179.72235 * 13 12 11 15 15 C 1.38881 * 119.92653 * 0.57197 * 14 13 12 16 16 O 1.35749 * 120.07010 * 179.68113 * 15 14 13 17 17 C 1.34835 * 117.00116 * 174.48747 * 16 15 14 18 18 H 1.07994 * 119.99855 * 5.05568 * 17 16 15 19 19 C 1.38652 * 119.99890 * 185.05742 * 17 16 15 20 20 N 1.31559 * 119.99910 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47146 * 89.99504 * 21 19 17 23 23 H 1.48499 * 109.47370 * 210.00364 * 21 19 17 24 24 H 1.48510 * 109.46719 * 329.99705 * 21 19 17 25 25 C 1.38884 * 119.86132 * 359.70202 * 15 14 13 26 26 C 1.38094 * 119.93256 * 0.02562 * 25 15 14 27 27 O 1.34047 * 108.76547 * 359.97438 * 6 5 4 28 28 H 1.08005 * 126.65022 * 0.23985 * 4 3 2 29 29 H 1.07998 * 126.44835 * 180.02562 * 5 4 3 30 30 H 0.97000 * 120.00052 * 245.00676 * 10 7 6 31 31 H 1.09001 * 109.47308 * 285.00112 * 11 10 7 32 32 H 1.09004 * 109.47127 * 45.00271 * 11 10 7 33 33 H 1.08006 * 119.96804 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.03629 * 180.27122 * 14 13 12 35 35 H 0.97000 * 120.00087 * 180.02562 * 20 19 17 36 36 H 1.08005 * 120.02904 * 179.97438 * 25 15 14 37 37 H 1.08001 * 119.96622 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3702 0.2085 1.0853 5 6 4.6962 0.1214 0.6298 6 6 4.6453 -0.1318 -0.6957 7 16 6.0379 -0.3350 -1.7559 8 8 5.5897 -0.0316 -3.0698 9 8 7.1209 0.3383 -1.1292 10 7 6.4244 -1.9453 -1.7541 11 6 5.4861 -2.9245 -2.3080 12 6 6.1982 -4.2345 -2.5273 13 6 6.8137 -4.4909 -3.7390 14 6 7.4720 -5.6880 -3.9410 15 6 7.5054 -6.6396 -2.9301 16 8 8.1461 -7.8199 -3.1278 17 6 8.2392 -8.6507 -2.0699 18 1 7.7443 -8.4020 -1.1429 19 6 8.9703 -9.8244 -2.1724 20 7 9.5727 -10.1276 -3.3020 21 14 9.0998 -10.9750 -0.7067 22 1 7.9867 -11.9571 -0.7484 23 1 10.3976 -11.6952 -0.7558 24 1 9.0182 -10.1874 0.5497 25 6 6.8815 -6.3813 -1.7164 26 6 6.2297 -5.1801 -1.5186 27 8 3.3607 -0.2041 -1.0719 28 1 3.0477 0.3983 2.0984 29 1 5.5886 0.2354 1.2273 30 1 7.2721 -2.2402 -1.3861 31 1 4.6610 -3.0717 -1.6111 32 1 5.0979 -2.5584 -3.2585 33 1 6.7830 -3.7525 -4.5266 34 1 7.9562 -5.8859 -4.8859 35 1 10.0839 -10.9488 -3.3738 36 1 6.9054 -7.1196 -0.9285 37 1 5.7440 -4.9788 -0.5752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804985948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:12 Heat of formation + Delta-G solvation = -39.895727 kcal Electronic energy + Delta-G solvation = -26219.045763 eV Core-core repulsion = 22056.003900 eV Total energy + Delta-G solvation = -4163.041863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.97063 -40.78896 -38.71329 -38.42513 -38.01114 -37.11411 -35.92593 -34.53884 -34.23157 -31.77018 -31.67832 -30.95025 -27.57138 -25.92628 -25.19052 -23.59272 -23.41174 -22.17290 -20.81886 -20.60867 -19.84969 -19.23199 -18.88218 -18.53130 -17.67615 -17.25877 -16.45755 -16.35937 -16.02483 -15.75679 -15.54271 -15.42639 -15.13365 -14.93810 -14.76491 -14.74201 -14.42624 -14.28937 -14.24041 -13.90504 -13.76224 -13.57675 -13.45975 -13.35980 -13.26670 -12.92966 -12.72672 -12.42921 -12.31146 -12.13967 -12.05315 -11.37823 -11.16056 -10.78832 -10.58069 -10.32787 -9.74787 -8.95897 -8.45843 -6.13844 -0.99483 -0.58985 0.61642 0.64330 0.74305 0.84332 1.37443 1.45975 1.54622 1.65193 1.95845 1.98875 2.19078 2.53769 2.80943 2.86732 3.19892 3.50603 3.54243 3.58131 3.86355 4.07451 4.09542 4.23060 4.24584 4.47903 4.50667 4.61117 4.63880 4.84899 4.95239 5.03689 5.10117 5.18111 5.33605 5.38923 5.59216 5.74368 5.80092 5.94924 6.04703 6.05271 6.23947 6.99195 7.80086 8.77209 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.015510 B = 0.002207 C = 0.002086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.805860 B =12681.366287 C =13418.655206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.304 3.696 3 C 0.073 3.927 4 C -0.119 4.119 5 C -0.077 4.077 6 C -0.556 4.556 7 S 2.744 3.256 8 O -0.967 6.967 9 O -0.949 6.949 10 N -1.094 6.094 11 C 0.171 3.829 12 C -0.175 4.175 13 C -0.049 4.049 14 C -0.209 4.209 15 C 0.119 3.881 16 O -0.232 6.232 17 C -0.411 4.411 18 H 0.106 0.894 19 C -0.024 4.024 20 N -0.921 5.921 21 Si 1.018 2.982 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.250 1.250 25 C -0.245 4.245 26 C -0.044 4.044 27 O -0.118 6.118 28 H 0.210 0.790 29 H 0.208 0.792 30 H 0.431 0.569 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.147 0.853 34 H 0.110 0.890 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 21.281 11.881 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.072 5.072 2 C -0.012 4.012 3 C 0.017 3.983 4 C -0.142 4.142 5 C -0.098 4.098 6 C -0.687 4.687 7 S 2.827 3.173 8 O -0.957 6.957 9 O -0.939 6.939 10 N -0.858 5.858 11 C 0.046 3.954 12 C -0.177 4.177 13 C -0.067 4.067 14 C -0.228 4.228 15 C 0.068 3.932 16 O -0.139 6.139 17 C -0.487 4.487 18 H 0.123 0.877 19 C -0.222 4.222 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.173 1.173 25 C -0.265 4.265 26 C -0.062 4.062 27 O -0.010 6.010 28 H 0.227 0.773 29 H 0.225 0.775 30 H 0.269 0.731 31 H 0.114 0.886 32 H 0.111 0.889 33 H 0.165 0.835 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.138 0.862 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.619 21.715 10.762 26.877 hybrid contribution 0.591 -1.343 0.760 1.652 sum -11.028 20.372 11.522 25.873 Atomic orbital electron populations 1.81410 1.11386 1.08553 1.05863 1.23503 0.89539 0.93712 0.94433 1.17290 0.84535 1.08739 0.87753 1.22611 0.90705 1.00335 1.00528 1.22432 1.00731 0.94610 0.92004 1.36251 0.98164 1.21167 1.13155 1.00835 0.71552 0.72330 0.72613 1.93594 1.82491 1.83287 1.36350 1.93656 1.49488 1.72641 1.78160 1.55457 1.29774 1.24333 1.76267 1.20179 0.90123 0.84796 1.00300 1.19479 1.06467 0.97004 0.94790 1.20975 0.93704 0.94508 0.97562 1.20458 1.08356 0.95037 0.98993 1.20037 0.91745 0.86326 0.95094 1.83950 1.67426 1.24436 1.38048 1.21841 1.33515 1.01225 0.92153 0.87720 1.26599 0.94948 0.98954 1.01686 1.70187 1.32525 1.25607 1.27585 0.84587 0.78305 0.77166 0.76176 1.18968 1.19904 1.17334 1.21281 1.06412 1.00896 0.97880 1.21028 0.95168 0.91013 0.99033 1.84257 1.14384 1.68604 1.33798 0.77278 0.77468 0.73052 0.88626 0.88865 0.83543 0.87192 0.91902 0.86189 0.83122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -7.59 18.54 19.00 0.35 -7.24 16 2 C 0.30 4.52 15.88 88.33 1.40 5.92 16 3 C 0.07 0.88 7.08 23.12 0.16 1.04 16 4 C -0.12 -0.74 10.84 22.42 0.24 -0.50 16 5 C -0.08 -0.58 10.59 22.08 0.23 -0.35 16 6 C -0.56 -7.13 7.32 67.09 0.49 -6.63 16 7 S 2.74 43.06 5.89 -56.49 -0.33 42.72 16 8 O -0.97 -22.20 17.49 -127.92 -2.24 -24.44 16 9 O -0.95 -17.94 17.83 -128.00 -2.28 -20.23 16 10 N -1.09 -15.56 5.99 -190.78 -1.14 -16.71 16 11 C 0.17 2.82 6.35 85.64 0.54 3.37 16 12 C -0.17 -4.33 5.28 -19.83 -0.10 -4.44 16 13 C -0.05 -1.43 9.69 22.25 0.22 -1.22 16 14 C -0.21 -8.24 9.99 22.39 0.22 -8.01 16 15 C 0.12 5.51 6.65 22.58 0.15 5.66 16 16 O -0.23 -13.44 9.76 -22.78 -0.22 -13.66 16 17 C -0.41 -22.96 9.49 67.92 0.64 -22.31 16 18 H 0.11 5.27 5.20 -2.91 -0.02 5.25 16 19 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 20 N -0.92 -55.41 13.67 21.61 0.30 -55.12 16 21 Si 1.02 41.29 29.55 68.60 2.03 43.32 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 25 C -0.25 -9.47 9.17 22.39 0.21 -9.27 16 26 C -0.04 -1.21 9.69 22.25 0.22 -0.99 16 27 O -0.12 -1.82 10.67 -5.73 -0.06 -1.88 16 28 H 0.21 -0.22 8.06 -2.91 -0.02 -0.24 16 29 H 0.21 0.40 8.06 -2.91 -0.02 0.37 16 30 H 0.43 5.47 8.64 -96.74 -0.84 4.63 16 31 H 0.10 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.09 1.49 7.69 -2.38 -0.02 1.47 16 33 H 0.15 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 36 H 0.12 4.75 5.64 -2.91 -0.02 4.74 16 37 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -79.55 358.07 1.82 -77.73 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.33 Total: 14.09 kcal Atomic # 6 Polarization: -43.70 SS G_CDS: 5.09 Total: -38.61 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -0.49 Total: -79.07 kcal Atomic # 8 Polarization: -55.40 SS G_CDS: -4.80 Total: -60.20 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.32 kcal Atomic # 16 Polarization: 43.06 SS G_CDS: -0.33 Total: 42.72 kcal Total: -79.55 1.82 -77.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804985948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.839 kcal (2) G-P(sol) polarization free energy of solvation -79.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds