Wall clock time and date at job start Wed Apr 1 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65604 * 119.99664 * 2 1 4 4 O 1.42099 * 106.39992 * 311.45973 * 3 2 1 5 5 O 1.42096 * 106.40171 * 178.53887 * 3 2 1 6 6 C 1.76202 * 107.21938 * 64.99613 * 3 2 1 7 7 C 1.35483 * 126.07929 * 270.02692 * 6 3 2 8 8 N 1.34964 * 108.98215 * 179.70666 * 7 6 3 9 9 H 0.97005 * 125.63230 * 180.26817 * 8 7 6 10 10 C 1.37694 * 108.72922 * 0.43862 * 8 7 6 11 11 C 1.46496 * 126.26532 * 179.82705 * 10 8 7 12 12 O 1.21614 * 120.00229 * 179.68795 * 11 10 8 13 13 O 1.34899 * 119.99443 * 359.69135 * 11 10 8 14 14 C 1.45202 * 116.99422 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46867 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 S 1.80999 * 109.47017 * 179.97438 * 16 15 14 18 18 C 1.76202 * 99.99745 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00485 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99444 * 180.02562 * 18 17 16 21 21 N 1.31636 * 119.99607 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00308 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47044 * 90.00718 * 22 20 18 24 24 H 1.48498 * 109.47318 * 210.00254 * 22 20 18 25 25 H 1.48496 * 109.47259 * 330.00293 * 22 20 18 26 26 C 1.37999 * 107.47510 * 359.56642 * 10 8 7 27 27 H 1.09007 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47438 * 299.99865 * 1 2 3 29 29 H 1.09001 * 109.47128 * 60.00129 * 1 2 3 30 30 H 0.96991 * 120.00657 * 179.97438 * 2 1 3 31 31 H 1.07990 * 125.50806 * 359.97438 * 7 6 3 32 32 H 1.09001 * 109.46860 * 60.00265 * 14 13 11 33 33 H 1.08993 * 109.47426 * 299.99627 * 14 13 11 34 34 H 1.09001 * 109.46801 * 300.00397 * 15 14 13 35 35 H 1.09001 * 109.46998 * 59.99993 * 15 14 13 36 36 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 0.97001 * 120.00147 * 179.97438 * 21 20 18 39 39 H 1.07998 * 126.51363 * 180.28324 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6737 1.1004 0.0348 6 6 1.9376 2.2416 1.5253 7 6 0.9170 3.1030 1.7533 8 7 0.9646 3.5094 3.0394 9 1 0.3447 4.1252 3.4608 10 6 2.0406 2.9086 3.6534 11 6 2.4509 3.0836 5.0488 12 8 3.4223 2.4896 5.4762 13 8 1.7511 3.9037 5.8598 14 6 2.2147 4.0283 7.2301 15 6 1.3034 4.9937 7.9909 16 6 1.7922 5.1256 9.4347 17 16 0.7146 6.2681 10.3344 18 6 1.4862 6.2332 11.9182 19 1 2.3604 5.6201 12.0796 20 6 0.9701 6.9938 12.9583 21 7 1.5468 6.9682 14.1414 22 14 -0.5416 8.0548 12.6790 23 1 -1.7628 7.2656 12.9808 24 1 -0.4858 9.2407 13.5710 25 1 -0.5782 8.5015 11.2634 26 6 2.6585 2.1068 2.7155 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9501 -0.8399 0.0004 31 1 0.1815 3.4108 1.0250 32 1 3.2348 4.4122 7.2351 33 1 2.1919 3.0509 7.7118 34 1 1.3266 5.9711 7.5091 35 1 0.2831 4.6102 7.9859 36 1 1.7694 4.1482 9.9167 37 1 2.8124 5.5093 9.4392 38 1 1.1865 7.4999 14.8682 39 1 3.5325 1.4919 2.8714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805395867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:55:47 Heat of formation + Delta-G solvation = -127.660648 kcal Electronic energy + Delta-G solvation = -24428.340644 eV Core-core repulsion = 20396.936960 eV Total energy + Delta-G solvation = -4031.403684 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -42.06176 -40.21861 -37.54535 -36.91668 -36.18708 -35.45599 -33.78547 -32.51646 -32.08132 -30.42721 -26.93952 -26.48525 -25.70906 -23.87406 -22.65609 -21.58871 -20.94669 -19.89104 -19.34890 -18.02067 -17.60407 -17.29242 -16.91956 -16.69525 -16.48690 -16.03320 -15.31544 -15.08066 -15.03432 -14.55244 -14.50801 -14.35334 -14.10402 -13.40308 -13.32695 -13.29454 -12.97689 -12.90672 -12.61695 -12.45471 -12.36526 -12.07328 -11.75814 -11.66976 -11.37298 -11.19603 -11.09002 -11.06856 -10.53333 -10.37079 -10.25794 -10.11819 -9.89584 -9.19233 -9.08734 -8.69993 -7.06010 -6.35822 -4.10054 0.07168 0.69045 1.34955 2.11923 2.45130 2.58824 2.78354 2.93607 3.23209 3.37489 3.41950 3.48053 3.88352 4.23401 4.27714 4.34682 4.50018 4.62203 4.68817 4.86856 4.89464 4.90862 4.98874 5.02895 5.15074 5.19617 5.24268 5.29394 5.55186 5.56219 5.73998 5.87504 5.96793 6.14408 6.20567 6.41932 6.43071 6.58909 7.38767 7.87681 8.37111 9.09173 10.73525 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.001564 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.437797 B =17895.946896 C =18293.079217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -1.122 6.122 3 S 2.727 3.273 4 O -0.961 6.961 5 O -0.958 6.958 6 C -0.763 4.763 7 C 0.154 3.846 8 N -0.509 5.509 9 H 0.434 0.566 10 C -0.040 4.040 11 C 0.534 3.466 12 O -0.491 6.491 13 O -0.361 6.361 14 C 0.075 3.925 15 C -0.101 4.101 16 C -0.085 4.085 17 S -0.206 6.206 18 C -0.506 4.506 19 H 0.089 0.911 20 C 0.092 3.908 21 N -0.879 5.879 22 Si 0.862 3.138 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.238 1.238 26 C -0.007 4.007 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.419 0.581 31 H 0.195 0.805 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.271 0.729 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 -13.128 -30.885 33.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.882 5.882 3 S 2.814 3.186 4 O -0.951 6.951 5 O -0.948 6.948 6 C -0.856 4.856 7 C 0.008 3.992 8 N -0.103 5.103 9 H 0.274 0.726 10 C -0.150 4.150 11 C 0.378 3.622 12 O -0.378 6.378 13 O -0.278 6.278 14 C 0.000 4.000 15 C -0.139 4.139 16 C -0.234 4.234 17 S 0.022 5.978 18 C -0.654 4.654 19 H 0.107 0.893 20 C -0.116 4.116 21 N -0.515 5.515 22 Si 0.687 3.313 23 H -0.193 1.193 24 H -0.200 1.200 25 H -0.162 1.162 26 C -0.032 4.032 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.087 0.913 30 H 0.253 0.747 31 H 0.212 0.788 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.216 -12.047 -31.303 33.944 hybrid contribution 0.088 -0.174 1.775 1.786 sum -5.128 -12.221 -29.527 32.365 Atomic orbital electron populations 1.21478 0.78557 1.04334 1.01896 1.55345 1.16170 1.24588 1.92049 1.00887 0.72592 0.72310 0.72841 1.93581 1.79018 1.68693 1.53834 1.93601 1.30701 1.83339 1.87141 1.31083 1.10541 1.21878 1.22141 1.21874 0.97727 0.93936 0.85682 1.42262 1.23075 1.35148 1.09777 0.72640 1.19622 0.95998 1.07574 0.91833 1.19609 0.80987 0.77074 0.84515 1.90948 1.26057 1.45650 1.75118 1.86506 1.55484 1.60942 1.24860 1.23315 0.99229 1.01284 0.76150 1.21342 0.99439 0.99352 0.93779 1.22945 1.02382 1.02709 0.95315 1.84148 1.42888 1.58522 1.12261 1.22111 1.17244 1.33420 0.92581 0.89251 1.24797 0.97065 0.95689 0.94073 1.69936 1.40146 1.39955 1.01486 0.86668 0.83095 0.80752 0.80799 1.19321 1.19979 1.16221 1.20996 0.97796 0.95964 0.88426 0.89936 0.92252 0.91280 0.74664 0.78798 0.90583 0.90605 0.90256 0.90291 0.90911 0.90853 0.91867 0.81380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.19 11.14 59.85 0.67 0.86 16 2 N -1.12 -4.54 6.19 -16.63 -0.10 -4.64 16 3 S 2.73 19.65 5.88 -107.50 -0.63 19.02 16 4 O -0.96 -9.03 17.57 -57.17 -1.00 -10.03 16 5 O -0.96 -10.24 17.87 -57.17 -1.02 -11.27 16 6 C -0.76 -5.48 6.15 -39.98 -0.25 -5.73 16 7 C 0.15 0.80 11.61 -17.16 -0.20 0.60 16 8 N -0.51 -3.13 6.07 -9.53 -0.06 -3.18 16 9 H 0.43 1.63 8.96 -40.82 -0.37 1.27 16 10 C -0.04 -0.39 7.10 -81.99 -0.58 -0.97 16 11 C 0.53 6.49 7.93 34.06 0.27 6.76 16 12 O -0.49 -7.29 16.68 -19.35 -0.32 -7.62 16 13 O -0.36 -4.26 10.23 -41.04 -0.42 -4.68 16 14 C 0.07 0.95 5.48 37.16 0.20 1.15 16 15 C -0.10 -1.42 5.60 -26.73 -0.15 -1.57 16 16 C -0.09 -1.55 5.67 37.16 0.21 -1.34 16 17 S -0.21 -4.81 19.41 -107.50 -2.09 -6.90 16 18 C -0.51 -14.35 10.04 30.94 0.31 -14.04 16 19 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 20 C 0.09 2.65 5.50 -17.43 -0.10 2.55 16 21 N -0.88 -26.24 13.97 55.49 0.78 -25.46 16 22 Si 0.86 20.99 27.74 -169.99 -4.71 16.28 16 23 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.24 -5.65 6.74 56.52 0.38 -5.27 16 26 C -0.01 -0.06 10.46 -39.09 -0.41 -0.47 16 27 H 0.08 0.06 8.14 -51.93 -0.42 -0.37 16 28 H 0.06 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.07 0.15 8.10 -51.93 -0.42 -0.27 16 30 H 0.42 1.06 8.96 -34.47 -0.31 0.75 16 31 H 0.20 0.28 8.06 -52.49 -0.42 -0.14 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 37 H 0.07 1.34 8.14 -51.91 -0.42 0.91 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 39 H 0.17 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -37.95 372.85 -8.89 -46.84 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -4.90 Total: -1.78 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -0.02 Total: -12.19 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.61 Total: -33.29 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -2.77 Total: -33.60 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.71 Total: 16.28 kcal Atomic # 16 Polarization: 14.84 SS G_CDS: -2.72 Total: 12.12 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.95 -8.89 -46.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805395867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.824 kcal (2) G-P(sol) polarization free energy of solvation -37.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds