Wall clock time and date at job start Wed Apr 1 2020 06:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65604 * 119.99664 * 2 1 4 4 O 1.42099 * 106.39992 * 311.45973 * 3 2 1 5 5 O 1.42096 * 106.40171 * 178.53887 * 3 2 1 6 6 C 1.76202 * 107.21938 * 64.99613 * 3 2 1 7 7 C 1.35483 * 126.07929 * 270.02692 * 6 3 2 8 8 N 1.34964 * 108.98215 * 179.70666 * 7 6 3 9 9 H 0.97005 * 125.63230 * 180.26817 * 8 7 6 10 10 C 1.37694 * 108.72922 * 0.43862 * 8 7 6 11 11 C 1.46496 * 126.26532 * 179.82705 * 10 8 7 12 12 O 1.21614 * 120.00229 * 179.68795 * 11 10 8 13 13 O 1.34899 * 119.99443 * 359.69135 * 11 10 8 14 14 C 1.45202 * 116.99422 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46867 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 S 1.80999 * 109.47017 * 179.97438 * 16 15 14 18 18 C 1.76202 * 99.99745 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00485 * 0.02562 * 18 17 16 20 20 C 1.38806 * 119.99444 * 180.02562 * 18 17 16 21 21 N 1.31636 * 119.99607 * 180.02562 * 20 18 17 22 22 Si 1.86792 * 120.00308 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47044 * 90.00718 * 22 20 18 24 24 H 1.48498 * 109.47318 * 210.00254 * 22 20 18 25 25 H 1.48496 * 109.47259 * 330.00293 * 22 20 18 26 26 C 1.37999 * 107.47510 * 359.56642 * 10 8 7 27 27 H 1.09007 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47438 * 299.99865 * 1 2 3 29 29 H 1.09001 * 109.47128 * 60.00129 * 1 2 3 30 30 H 0.96991 * 120.00657 * 179.97438 * 2 1 3 31 31 H 1.07990 * 125.50806 * 359.97438 * 7 6 3 32 32 H 1.09001 * 109.46860 * 60.00265 * 14 13 11 33 33 H 1.08993 * 109.47426 * 299.99627 * 14 13 11 34 34 H 1.09001 * 109.46801 * 300.00397 * 15 14 13 35 35 H 1.09001 * 109.46998 * 59.99993 * 15 14 13 36 36 H 1.08996 * 109.46952 * 300.00302 * 16 15 14 37 37 H 1.09001 * 109.46832 * 60.00321 * 16 15 14 38 38 H 0.97001 * 120.00147 * 179.97438 * 21 20 18 39 39 H 1.07998 * 126.51363 * 180.28324 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2929 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6737 1.1004 0.0348 6 6 1.9376 2.2416 1.5253 7 6 0.9170 3.1030 1.7533 8 7 0.9646 3.5094 3.0394 9 1 0.3447 4.1252 3.4608 10 6 2.0406 2.9086 3.6534 11 6 2.4509 3.0836 5.0488 12 8 3.4223 2.4896 5.4762 13 8 1.7511 3.9037 5.8598 14 6 2.2147 4.0283 7.2301 15 6 1.3034 4.9937 7.9909 16 6 1.7922 5.1256 9.4347 17 16 0.7146 6.2681 10.3344 18 6 1.4862 6.2332 11.9182 19 1 2.3604 5.6201 12.0796 20 6 0.9701 6.9938 12.9583 21 7 1.5468 6.9682 14.1414 22 14 -0.5416 8.0548 12.6790 23 1 -1.7628 7.2656 12.9808 24 1 -0.4858 9.2407 13.5710 25 1 -0.5782 8.5015 11.2634 26 6 2.6585 2.1068 2.7155 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.9501 -0.8399 0.0004 31 1 0.1815 3.4108 1.0250 32 1 3.2348 4.4122 7.2351 33 1 2.1919 3.0509 7.7118 34 1 1.3266 5.9711 7.5091 35 1 0.2831 4.6102 7.9859 36 1 1.7694 4.1482 9.9167 37 1 2.8124 5.5093 9.4392 38 1 1.1865 7.4999 14.8682 39 1 3.5325 1.4919 2.8714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805395867.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:55:47 Heat of formation + Delta-G solvation = -157.270077 kcal Electronic energy + Delta-G solvation = -24429.624605 eV Core-core repulsion = 20396.936960 eV Total energy + Delta-G solvation = -4032.687646 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.68768 -41.13504 -38.21810 -37.93346 -36.86317 -35.76279 -35.01202 -34.70216 -32.65828 -31.11624 -28.28578 -27.71534 -26.71070 -24.76439 -23.20678 -22.78968 -21.61670 -20.58774 -19.96372 -19.57684 -18.55683 -18.31870 -17.90372 -17.20504 -17.12659 -17.06360 -16.77327 -16.26020 -16.03709 -15.55589 -15.38511 -14.97823 -14.86323 -14.58288 -14.45100 -14.16322 -14.06649 -13.83140 -13.68188 -13.40414 -13.16097 -13.06854 -13.06186 -12.68276 -12.49853 -12.48104 -12.38458 -12.33898 -11.97056 -11.74229 -11.62032 -11.18393 -10.78830 -10.63683 -10.44006 -9.82979 -9.02847 -8.53789 -6.26396 -0.47127 -0.03916 0.80841 1.00258 1.29746 1.31677 1.46931 1.73142 1.76187 1.95283 2.22905 2.31756 2.63189 2.84247 2.87879 3.30966 3.53208 3.78218 3.87315 3.95397 4.02962 4.07657 4.20753 4.24269 4.33883 4.46878 4.59711 4.61415 4.78610 4.93996 4.97605 5.02447 5.10847 5.12369 5.22560 5.33013 5.67340 6.08575 6.15689 6.19349 6.45726 6.89500 8.59242 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.033996 B = 0.001564 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.437797 B =17895.946896 C =18293.079217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -1.114 6.114 3 S 2.748 3.252 4 O -0.982 6.982 5 O -0.999 6.999 6 C -0.775 4.775 7 C 0.183 3.817 8 N -0.499 5.499 9 H 0.446 0.554 10 C -0.065 4.065 11 C 0.536 3.464 12 O -0.527 6.527 13 O -0.353 6.353 14 C 0.080 3.920 15 C -0.086 4.086 16 C -0.076 4.076 17 S -0.203 6.203 18 C -0.528 4.528 19 H 0.050 0.950 20 C 0.036 3.964 21 N -0.922 5.922 22 Si 0.927 3.073 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.226 1.226 26 C -0.014 4.014 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.427 0.573 31 H 0.239 0.761 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.277 0.723 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.604 -12.747 -33.238 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.877 5.877 3 S 2.835 3.165 4 O -0.972 6.972 5 O -0.989 6.989 6 C -0.868 4.868 7 C 0.035 3.965 8 N -0.093 5.093 9 H 0.289 0.711 10 C -0.174 4.174 11 C 0.382 3.618 12 O -0.417 6.417 13 O -0.270 6.270 14 C 0.005 3.995 15 C -0.124 4.124 16 C -0.225 4.225 17 S 0.025 5.975 18 C -0.676 4.676 19 H 0.069 0.931 20 C -0.168 4.168 21 N -0.559 5.559 22 Si 0.748 3.252 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.149 1.149 26 C -0.039 4.039 27 H 0.119 0.881 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.263 0.737 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.889 -11.666 -33.664 36.491 hybrid contribution 0.958 -0.422 2.408 2.625 sum -6.931 -12.089 -31.256 34.222 Atomic orbital electron populations 1.21768 0.77049 1.05925 1.02689 1.55089 1.17091 1.23738 1.91746 1.00031 0.71592 0.72444 0.72419 1.93550 1.79159 1.69734 1.54772 1.93545 1.33597 1.84061 1.87684 1.31036 1.11369 1.23159 1.21249 1.22593 0.96965 0.91429 0.85535 1.42235 1.22264 1.34913 1.09921 0.71117 1.19308 0.97954 1.09402 0.90736 1.19977 0.80341 0.76195 0.85249 1.90929 1.27683 1.47160 1.75931 1.86484 1.55250 1.60973 1.24262 1.23103 0.98721 1.00926 0.76779 1.21145 0.99962 1.00305 0.91008 1.22980 1.01239 1.01040 0.97215 1.83749 1.43781 1.60519 1.09447 1.22364 1.16589 1.32784 0.95818 0.93141 1.25823 1.00328 0.97009 0.93678 1.70045 1.42076 1.41189 1.02638 0.85689 0.78907 0.79106 0.81481 1.18461 1.18870 1.14925 1.21104 0.97789 0.95742 0.89305 0.88060 0.90958 0.91046 0.73744 0.74522 0.90736 0.90507 0.89436 0.89246 0.91019 0.91110 0.91367 0.82169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.14 11.14 127.77 1.42 1.56 16 2 N -1.11 -7.15 6.19 -206.53 -1.28 -8.43 16 3 S 2.75 36.50 5.88 -56.49 -0.33 36.17 16 4 O -0.98 -16.80 17.57 -128.00 -2.25 -19.05 16 5 O -1.00 -21.48 17.87 -128.00 -2.29 -23.77 16 6 C -0.78 -9.73 6.15 22.01 0.14 -9.60 16 7 C 0.18 1.27 11.61 83.57 0.97 2.24 16 8 N -0.50 -4.71 6.07 -184.05 -1.12 -5.83 16 9 H 0.45 1.88 8.96 -92.70 -0.83 1.05 16 10 C -0.06 -1.15 7.10 40.32 0.29 -0.87 16 11 C 0.54 12.67 7.93 69.97 0.55 13.22 16 12 O -0.53 -15.86 16.68 19.46 0.32 -15.54 16 13 O -0.35 -7.77 10.23 -58.13 -0.59 -8.37 16 14 C 0.08 1.92 5.48 71.98 0.39 2.32 16 15 C -0.09 -2.24 5.60 30.60 0.17 -2.07 16 16 C -0.08 -2.71 5.67 71.98 0.41 -2.30 16 17 S -0.20 -9.28 19.41 -56.49 -1.10 -10.38 16 18 C -0.53 -30.53 10.04 67.96 0.68 -29.84 16 19 H 0.05 3.19 8.03 -2.91 -0.02 3.17 16 20 C 0.04 2.11 5.50 84.86 0.47 2.57 16 21 N -0.92 -56.14 13.97 21.65 0.30 -55.84 16 22 Si 0.93 42.84 27.74 68.60 1.90 44.74 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.23 -9.91 6.74 99.48 0.67 -9.24 16 26 C -0.01 -0.25 10.46 22.59 0.24 -0.01 16 27 H 0.10 -0.15 8.14 -2.38 -0.02 -0.17 16 28 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.07 0.13 8.10 -2.39 -0.02 0.11 16 30 H 0.43 1.61 8.96 -96.76 -0.87 0.74 16 31 H 0.24 -0.50 8.06 -2.92 -0.02 -0.53 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 37 H 0.07 2.56 8.14 -2.40 -0.02 2.54 16 38 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -83.69 372.85 -1.33 -85.02 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -0.63 Total: 4.04 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 5.73 Total: -22.78 kcal Atomic # 7 Polarization: -68.01 SS G_CDS: -2.09 Total: -70.10 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -4.81 Total: -66.72 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.90 Total: 44.74 kcal Atomic # 16 Polarization: 27.22 SS G_CDS: -1.43 Total: 25.79 kcal Total: -83.69 -1.33 -85.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805395867.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.250 kcal (2) G-P(sol) polarization free energy of solvation -83.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds