Wall clock time and date at job start Wed Apr 1 2020 05:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53664 * 112.53987 * 2 1 4 4 C 1.54069 * 101.00461 * 91.29448 * 3 2 1 5 5 C 1.51125 * 104.43919 * 25.69354 * 4 3 2 6 6 O 1.21280 * 124.72918 * 169.19566 * 5 4 3 7 7 N 1.35826 * 110.54128 * 349.20715 * 5 4 3 8 8 C 1.46846 * 138.49037 * 165.20723 * 7 5 4 9 9 H 1.08993 * 108.67789 * 316.74104 * 8 7 5 10 10 C 1.50699 * 108.66932 * 74.59497 * 8 7 5 11 11 O 1.21273 * 120.00874 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99566 * 179.97438 * 10 8 7 13 13 S 1.65600 * 120.00197 * 179.97438 * 12 10 8 14 14 O 1.42098 * 104.27744 * 181.07506 * 13 12 10 15 15 O 1.42101 * 104.27505 * 308.92826 * 13 12 10 16 16 C 1.81395 * 104.44927 * 64.99976 * 13 12 10 17 17 C 1.50702 * 109.47198 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99985 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99901 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00221 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47173 * 59.99863 * 21 19 17 23 23 H 1.48499 * 109.47282 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47332 * 300.00188 * 21 19 17 25 25 C 1.54428 * 113.55737 * 195.66467 * 8 7 5 26 26 S 1.83558 * 112.61952 * 233.64513 * 2 1 3 27 27 H 1.09002 * 109.47153 * 301.30983 * 1 2 3 28 28 H 1.09001 * 109.46832 * 181.31174 * 1 2 3 29 29 H 1.09004 * 109.47261 * 61.31156 * 1 2 3 30 30 H 1.09002 * 111.18150 * 208.37526 * 3 2 1 31 31 H 1.08994 * 111.18319 * 332.69381 * 3 2 1 32 32 H 1.08998 * 109.98039 * 267.13842 * 4 3 2 33 33 H 1.09002 * 110.91223 * 144.70610 * 4 3 2 34 34 H 0.97008 * 120.00248 * 0.02562 * 12 10 8 35 35 H 1.09003 * 109.47195 * 300.00026 * 16 13 12 36 36 H 1.08997 * 109.47199 * 59.99975 * 16 13 12 37 37 H 0.96992 * 120.00384 * 179.97438 * 20 19 17 38 38 H 1.08996 * 110.98287 * 135.58433 * 25 8 7 39 39 H 1.09003 * 110.98599 * 259.38787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1190 1.4193 0.0000 4 6 2.2633 1.6778 1.5120 5 6 2.3935 0.3000 2.1191 6 8 2.7116 0.0786 3.2683 7 7 2.1048 -0.6558 1.1983 8 6 2.2717 -2.1048 1.0280 9 1 3.2761 -2.3806 1.3490 10 6 1.2769 -2.8121 1.9119 11 8 0.5167 -2.1695 2.6047 12 7 1.2321 -4.1590 1.9326 13 16 0.1395 -4.9364 2.9043 14 8 0.3973 -6.3168 2.6870 15 8 0.3285 -4.3485 4.1841 16 6 -1.4782 -4.4761 2.2249 17 6 -2.5678 -5.1298 3.0352 18 1 -2.3125 -5.7595 3.8747 19 6 -3.8904 -4.9248 2.7042 20 7 -4.2012 -4.1592 1.6811 21 14 -5.2410 -5.7356 3.7082 22 1 -5.1496 -5.2813 5.1191 23 1 -6.5653 -5.3588 3.1521 24 1 -5.0816 -7.2110 3.6520 25 6 2.0685 -2.5828 -0.4263 26 16 2.2360 -1.0044 -1.3646 27 1 -0.3633 0.5340 0.8780 28 1 -0.3633 -1.0274 0.0235 29 1 -0.3634 0.4933 -0.9015 30 1 3.0959 1.4402 -0.4830 31 1 1.4359 2.1292 -0.4662 32 1 1.3725 2.1788 1.8908 33 1 3.1524 2.2725 1.7219 34 1 1.8404 -4.6731 1.3787 35 1 -1.5950 -3.3931 2.2665 36 1 -1.5454 -4.8093 1.1893 37 1 -5.1316 -4.0152 1.4480 38 1 2.8430 -3.2930 -0.7155 39 1 1.0762 -3.0135 -0.5606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821582074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:53 Heat of formation + Delta-G solvation = -121.787127 kcal Electronic energy + Delta-G solvation = -27638.284383 eV Core-core repulsion = 23607.135394 eV Total energy + Delta-G solvation = -4031.148989 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14450 -39.58132 -37.15177 -36.33289 -35.24819 -34.74166 -33.95724 -33.41493 -30.58771 -29.99791 -29.13250 -25.75713 -25.40917 -23.60881 -22.07477 -21.67523 -19.70643 -19.19341 -18.17729 -17.57259 -17.30018 -16.53874 -16.31202 -16.21698 -15.64645 -15.33365 -14.98131 -14.87181 -14.51158 -14.28160 -14.26597 -13.90926 -13.65541 -13.40522 -13.05040 -12.90829 -12.61911 -12.58123 -12.28094 -12.08152 -11.92259 -11.54778 -11.53191 -11.36581 -11.33012 -11.26143 -10.94340 -10.90833 -10.72101 -10.59586 -10.21375 -9.99403 -9.88314 -9.26294 -9.06952 -8.75225 -8.23000 -6.38711 -4.50020 0.91044 1.19334 1.54924 2.12013 2.27387 2.34131 3.09811 3.21491 3.23809 3.28783 3.65041 3.90596 4.01904 4.16140 4.20862 4.40726 4.47672 4.51712 4.57421 4.90575 4.91974 4.95291 5.02682 5.10375 5.11569 5.25404 5.31720 5.44247 5.50547 5.56056 5.82127 6.01314 6.46519 6.64054 6.76376 6.87369 7.35727 7.56357 7.67877 7.87769 8.50453 9.17789 10.73015 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.003794 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.724212 B = 7378.948964 C = 7770.027480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.175 3.825 3 C -0.108 4.108 4 C -0.139 4.139 5 C 0.547 3.453 6 O -0.501 6.501 7 N -0.608 5.608 8 C 0.137 3.863 9 H 0.124 0.876 10 C 0.517 3.483 11 O -0.458 6.458 12 N -1.059 6.059 13 S 2.549 3.451 14 O -0.966 6.966 15 O -0.948 6.948 16 C -0.400 4.400 17 C -0.537 4.537 18 H 0.070 0.930 19 C 0.079 3.921 20 N -0.877 5.877 21 Si 0.906 3.094 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.268 1.268 25 C -0.077 4.077 26 S -0.246 6.246 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.424 0.576 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.270 0.730 38 H 0.135 0.865 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.515 10.594 -11.131 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 C -0.147 4.147 4 C -0.180 4.180 5 C 0.335 3.665 6 O -0.373 6.373 7 N -0.347 5.347 8 C 0.027 3.973 9 H 0.141 0.859 10 C 0.298 3.702 11 O -0.325 6.325 12 N -0.819 5.819 13 S 2.651 3.349 14 O -0.957 6.957 15 O -0.939 6.939 16 C -0.537 4.537 17 C -0.576 4.576 18 H 0.088 0.912 19 C -0.127 4.127 20 N -0.513 5.513 21 Si 0.732 3.268 22 H -0.193 1.193 23 H -0.206 1.206 24 H -0.193 1.193 25 C -0.226 4.226 26 S -0.016 6.016 27 H 0.096 0.904 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.258 0.742 35 H 0.115 0.885 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 13.788 10.692 -10.349 20.287 hybrid contribution -1.153 -0.883 0.704 1.614 sum 12.636 9.809 -9.645 18.679 Atomic orbital electron populations 1.22164 0.89845 1.04584 1.03685 1.24346 0.97336 0.95578 0.84885 1.22413 1.03035 0.92891 0.96338 1.22244 1.06258 0.94332 0.95163 1.21102 0.75115 0.86056 0.84179 1.90781 1.46132 1.84115 1.16262 1.49416 1.63132 1.04026 1.18117 1.21195 1.00684 0.80426 0.94958 0.85882 1.20740 0.84886 0.81859 0.82692 1.90944 1.38727 1.64694 1.38178 1.55579 1.51946 1.15379 1.59041 1.07328 0.78475 0.73821 0.75272 1.93526 1.85154 1.31213 1.85786 1.93553 1.85097 1.77526 1.37691 1.27578 1.10458 1.08261 1.07445 1.20237 0.90137 1.32111 1.15113 0.91180 1.24899 0.98571 0.94331 0.94943 1.69928 1.19282 1.35853 1.26215 0.86400 0.79827 0.80075 0.80506 1.19334 1.20600 1.19339 1.24641 1.08500 0.98538 0.90929 1.88268 1.82572 1.04510 1.26272 0.90392 0.90974 0.89885 0.88623 0.87927 0.86907 0.86837 0.74212 0.88534 0.89694 0.92053 0.84644 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.29 37.16 0.35 -1.16 16 2 C 0.17 1.70 0.90 -66.65 -0.06 1.64 16 3 C -0.11 -0.72 6.30 -25.83 -0.16 -0.88 16 4 C -0.14 -1.12 6.78 -27.12 -0.18 -1.31 16 5 C 0.55 7.52 8.27 -10.30 -0.09 7.43 16 6 O -0.50 -9.31 18.03 5.56 0.10 -9.21 16 7 N -0.61 -7.61 2.35 -152.36 -0.36 -7.97 16 8 C 0.14 1.61 3.61 -68.15 -0.25 1.36 16 9 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 10 C 0.52 8.40 6.76 -10.98 -0.07 8.33 16 11 O -0.46 -9.64 14.40 -11.56 -0.17 -9.81 16 12 N -1.06 -16.22 5.46 31.22 0.17 -16.05 16 13 S 2.55 54.83 5.03 -107.50 -0.54 54.29 16 14 O -0.97 -21.71 18.08 -57.54 -1.04 -22.75 16 15 O -0.95 -24.17 17.04 -64.79 -1.10 -25.28 16 16 C -0.40 -9.73 5.64 36.01 0.20 -9.53 16 17 C -0.54 -14.89 9.13 -34.44 -0.31 -15.21 16 18 H 0.07 1.91 7.71 -52.49 -0.40 1.50 16 19 C 0.08 2.18 5.46 -17.82 -0.10 2.09 16 20 N -0.88 -24.53 13.29 55.43 0.74 -23.79 16 21 Si 0.91 20.96 29.54 -169.99 -5.02 15.94 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 25 C -0.08 -0.65 6.67 37.91 0.25 -0.40 16 26 S -0.25 -2.24 22.35 -107.50 -2.40 -4.64 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 0.57 7.90 -51.93 -0.41 0.16 16 31 H 0.10 0.47 8.00 -51.93 -0.42 0.05 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.42 4.34 8.53 -34.47 -0.29 4.04 16 35 H 0.10 2.46 7.19 -51.92 -0.37 2.08 16 36 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.14 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.11 0.99 7.78 -51.93 -0.40 0.59 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -39.76 356.25 -9.50 -49.26 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.82 Total: 2.28 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -0.42 Total: -7.63 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.55 Total: -47.81 kcal Atomic # 8 Polarization: -64.84 SS G_CDS: -2.21 Total: -67.05 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -2.94 Total: 49.64 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -39.76 -9.50 -49.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.528 kcal (2) G-P(sol) polarization free energy of solvation -39.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds