Wall clock time and date at job start Wed Apr 1 2020 05:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53664 * 112.53987 * 2 1 4 4 C 1.54069 * 101.00461 * 91.29448 * 3 2 1 5 5 C 1.51125 * 104.43919 * 25.69354 * 4 3 2 6 6 O 1.21280 * 124.72918 * 169.19566 * 5 4 3 7 7 N 1.35826 * 110.54128 * 349.20715 * 5 4 3 8 8 C 1.46846 * 138.49037 * 165.20723 * 7 5 4 9 9 H 1.08993 * 108.67789 * 316.74104 * 8 7 5 10 10 C 1.50699 * 108.66932 * 74.59497 * 8 7 5 11 11 O 1.21273 * 120.00874 * 359.97438 * 10 8 7 12 12 N 1.34779 * 119.99566 * 179.97438 * 10 8 7 13 13 S 1.65600 * 120.00197 * 179.97438 * 12 10 8 14 14 O 1.42098 * 104.27744 * 181.07506 * 13 12 10 15 15 O 1.42101 * 104.27505 * 308.92826 * 13 12 10 16 16 C 1.81395 * 104.44927 * 64.99976 * 13 12 10 17 17 C 1.50702 * 109.47198 * 180.02562 * 16 13 12 18 18 H 1.07997 * 119.99985 * 359.97438 * 17 16 13 19 19 C 1.37881 * 119.99901 * 180.02562 * 17 16 13 20 20 N 1.31510 * 120.00221 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99873 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47173 * 59.99863 * 21 19 17 23 23 H 1.48499 * 109.47282 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47332 * 300.00188 * 21 19 17 25 25 C 1.54428 * 113.55737 * 195.66467 * 8 7 5 26 26 S 1.83558 * 112.61952 * 233.64513 * 2 1 3 27 27 H 1.09002 * 109.47153 * 301.30983 * 1 2 3 28 28 H 1.09001 * 109.46832 * 181.31174 * 1 2 3 29 29 H 1.09004 * 109.47261 * 61.31156 * 1 2 3 30 30 H 1.09002 * 111.18150 * 208.37526 * 3 2 1 31 31 H 1.08994 * 111.18319 * 332.69381 * 3 2 1 32 32 H 1.08998 * 109.98039 * 267.13842 * 4 3 2 33 33 H 1.09002 * 110.91223 * 144.70610 * 4 3 2 34 34 H 0.97008 * 120.00248 * 0.02562 * 12 10 8 35 35 H 1.09003 * 109.47195 * 300.00026 * 16 13 12 36 36 H 1.08997 * 109.47199 * 59.99975 * 16 13 12 37 37 H 0.96992 * 120.00384 * 179.97438 * 20 19 17 38 38 H 1.08996 * 110.98287 * 135.58433 * 25 8 7 39 39 H 1.09003 * 110.98599 * 259.38787 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1190 1.4193 0.0000 4 6 2.2633 1.6778 1.5120 5 6 2.3935 0.3000 2.1191 6 8 2.7116 0.0786 3.2683 7 7 2.1048 -0.6558 1.1983 8 6 2.2717 -2.1048 1.0280 9 1 3.2761 -2.3806 1.3490 10 6 1.2769 -2.8121 1.9119 11 8 0.5167 -2.1695 2.6047 12 7 1.2321 -4.1590 1.9326 13 16 0.1395 -4.9364 2.9043 14 8 0.3973 -6.3168 2.6870 15 8 0.3285 -4.3485 4.1841 16 6 -1.4782 -4.4761 2.2249 17 6 -2.5678 -5.1298 3.0352 18 1 -2.3125 -5.7595 3.8747 19 6 -3.8904 -4.9248 2.7042 20 7 -4.2012 -4.1592 1.6811 21 14 -5.2410 -5.7356 3.7082 22 1 -5.1496 -5.2813 5.1191 23 1 -6.5653 -5.3588 3.1521 24 1 -5.0816 -7.2110 3.6520 25 6 2.0685 -2.5828 -0.4263 26 16 2.2360 -1.0044 -1.3646 27 1 -0.3633 0.5340 0.8780 28 1 -0.3633 -1.0274 0.0235 29 1 -0.3634 0.4933 -0.9015 30 1 3.0959 1.4402 -0.4830 31 1 1.4359 2.1292 -0.4662 32 1 1.3725 2.1788 1.8908 33 1 3.1524 2.2725 1.7219 34 1 1.8404 -4.6731 1.3787 35 1 -1.5950 -3.3931 2.2665 36 1 -1.5454 -4.8093 1.1893 37 1 -5.1316 -4.0152 1.4480 38 1 2.8430 -3.2930 -0.7155 39 1 1.0762 -3.0135 -0.5606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821582074.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:52 Heat of formation + Delta-G solvation = -153.723146 kcal Electronic energy + Delta-G solvation = -27639.669233 eV Core-core repulsion = 23607.135394 eV Total energy + Delta-G solvation = -4032.533839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18641 -40.82175 -38.29461 -38.12927 -37.15020 -36.02447 -35.48056 -35.01019 -31.46693 -31.16567 -30.77146 -26.57270 -26.36694 -25.63136 -23.26473 -22.46594 -21.06194 -20.45181 -19.49106 -19.11513 -18.61122 -18.21935 -17.64709 -17.18079 -17.12519 -16.60094 -16.52936 -16.20489 -15.83921 -15.76022 -15.20390 -14.82035 -14.59514 -14.48967 -14.26388 -14.19244 -13.88932 -13.73517 -13.65341 -13.54507 -13.36400 -13.29828 -13.18809 -12.81680 -12.76935 -12.59527 -12.35053 -12.17097 -11.97627 -11.93116 -11.84181 -11.31158 -11.16753 -10.98789 -10.82463 -10.09885 -8.91964 -8.47146 -6.66524 -0.86009 0.47467 0.72981 0.90379 1.18992 1.34890 1.38551 1.39059 1.46531 1.68260 2.26509 2.65314 2.84235 2.86817 2.90065 3.16547 3.28062 3.47149 3.67003 3.73227 3.85156 3.92682 4.26096 4.31694 4.35396 4.52748 4.57904 4.59615 4.66065 4.77445 4.95186 4.98471 4.99173 5.16134 5.23694 5.54707 5.63955 5.86206 6.28825 6.42002 6.87207 7.05432 8.65393 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014432 B = 0.003794 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.724212 B = 7378.948964 C = 7770.027480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.164 3.836 3 C -0.094 4.094 4 C -0.130 4.130 5 C 0.532 3.468 6 O -0.565 6.565 7 N -0.618 5.618 8 C 0.138 3.862 9 H 0.149 0.851 10 C 0.513 3.487 11 O -0.511 6.511 12 N -1.038 6.038 13 S 2.590 3.410 14 O -0.974 6.974 15 O -0.990 6.990 16 C -0.412 4.412 17 C -0.573 4.573 18 H 0.065 0.935 19 C 0.030 3.970 20 N -0.903 5.903 21 Si 0.964 3.036 22 H -0.268 1.268 23 H -0.266 1.266 24 H -0.257 1.257 25 C -0.078 4.078 26 S -0.226 6.226 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.122 0.878 33 H 0.138 0.862 34 H 0.449 0.551 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.276 0.724 38 H 0.179 0.821 39 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.584 11.059 -13.332 22.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.132 4.132 4 C -0.170 4.170 5 C 0.323 3.677 6 O -0.441 6.441 7 N -0.355 5.355 8 C 0.027 3.973 9 H 0.166 0.834 10 C 0.297 3.703 11 O -0.382 6.382 12 N -0.804 5.804 13 S 2.691 3.309 14 O -0.964 6.964 15 O -0.980 6.980 16 C -0.547 4.547 17 C -0.612 4.612 18 H 0.083 0.917 19 C -0.174 4.174 20 N -0.539 5.539 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.190 1.190 24 H -0.181 1.181 25 C -0.226 4.226 26 S 0.004 5.996 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.140 0.860 33 H 0.156 0.844 34 H 0.289 0.711 35 H 0.094 0.906 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.197 0.803 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 14.856 11.130 -12.630 22.452 hybrid contribution -1.446 -1.021 1.313 2.204 sum 13.410 10.109 -11.317 20.251 Atomic orbital electron populations 1.22164 0.90955 1.02749 1.04363 1.24542 0.96698 0.97633 0.84291 1.22504 1.04288 0.91129 0.95320 1.22342 1.07816 0.91090 0.95766 1.22240 0.73632 0.88239 0.83568 1.90735 1.49117 1.85379 1.18908 1.49674 1.62421 1.04362 1.19022 1.21486 0.99792 0.80070 0.95905 0.83369 1.21798 0.84785 0.81509 0.82250 1.90929 1.41103 1.65607 1.40533 1.54939 1.51210 1.15584 1.58716 1.05733 0.77551 0.73177 0.74439 1.93504 1.85079 1.31911 1.85953 1.93502 1.85534 1.78444 1.40561 1.27579 1.12672 1.06720 1.07735 1.20671 0.91873 1.32893 1.15778 0.91698 1.25806 1.00833 0.94754 0.95985 1.70000 1.20128 1.36535 1.27273 0.85517 0.77404 0.79675 0.78848 1.19308 1.18980 1.18101 1.24846 1.10066 0.99336 0.88398 1.88209 1.82055 1.04037 1.25317 0.91724 0.93972 0.87315 0.87097 0.85083 0.85967 0.84417 0.71062 0.90584 0.88964 0.91518 0.80312 0.87036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.29 71.98 0.67 -2.27 16 2 C 0.16 2.89 0.90 44.89 0.04 2.94 16 3 C -0.09 -0.95 6.30 31.18 0.20 -0.75 16 4 C -0.13 -1.85 6.78 30.34 0.21 -1.64 16 5 C 0.53 14.61 8.27 87.63 0.73 15.34 16 6 O -0.56 -21.86 18.03 -3.03 -0.05 -21.91 16 7 N -0.62 -15.00 2.35 -753.74 -1.77 -16.77 16 8 C 0.14 3.05 3.61 44.66 0.16 3.21 16 9 H 0.15 2.55 8.14 -2.39 -0.02 2.53 16 10 C 0.51 16.84 6.76 87.66 0.59 17.43 16 11 O -0.51 -22.60 14.40 13.37 0.19 -22.41 16 12 N -1.04 -31.46 5.46 -173.54 -0.95 -32.41 16 13 S 2.59 113.59 5.03 -56.49 -0.28 113.31 16 14 O -0.97 -43.54 18.08 -127.65 -2.31 -45.85 16 15 O -0.99 -52.18 17.04 -120.72 -2.06 -54.24 16 16 C -0.41 -20.77 5.64 71.24 0.40 -20.37 16 17 C -0.57 -32.75 9.13 25.60 0.23 -32.51 16 18 H 0.06 3.65 7.71 -2.91 -0.02 3.63 16 19 C 0.03 1.69 5.46 84.66 0.46 2.15 16 20 N -0.90 -51.38 13.29 21.45 0.28 -51.10 16 21 Si 0.96 43.02 29.54 68.60 2.03 45.04 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 C -0.08 -1.11 6.67 72.47 0.48 -0.63 16 26 S -0.23 -3.44 22.35 -56.49 -1.26 -4.70 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.11 0.85 7.90 -2.39 -0.02 0.83 16 31 H 0.13 0.64 8.00 -2.39 -0.02 0.62 16 32 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.45 8.38 8.53 -96.74 -0.83 7.56 16 35 H 0.08 4.11 7.19 -2.39 -0.02 4.10 16 36 H 0.09 4.38 8.14 -2.39 -0.02 4.36 16 37 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 38 H 0.18 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.11 1.72 7.78 -2.39 -0.02 1.70 16 Total: -1.00 -91.17 356.25 -1.74 -92.91 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.27 Total: 15.23 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.17 Total: -17.11 kcal Atomic # 7 Polarization: -97.84 SS G_CDS: -2.43 Total: -100.28 kcal Atomic # 8 Polarization: -140.18 SS G_CDS: -4.23 Total: -144.41 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 110.16 SS G_CDS: -1.55 Total: 108.61 kcal Total: -91.17 -1.74 -92.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821582074.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.816 kcal (2) G-P(sol) polarization free energy of solvation -91.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds