Wall clock time and date at job start Wed Apr 1 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86805 * 120.00203 * 2 1 4 4 H 1.48497 * 109.47201 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46743 * 299.99827 * 3 2 1 6 6 H 1.48494 * 109.47241 * 60.00295 * 3 2 1 7 7 C 1.40026 * 120.00244 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00707 * 163.16679 * 7 2 1 9 9 C 1.41553 * 119.99961 * 343.17465 * 7 2 1 10 10 C 1.41190 * 120.99778 * 156.12606 * 9 7 2 11 11 C 1.36556 * 119.14648 * 180.02562 * 10 9 7 12 12 N 1.32093 * 121.27008 * 359.71882 * 11 10 9 13 13 C 1.32538 * 122.21698 * 0.58046 * 12 11 10 14 14 N 1.39079 * 119.65948 * 179.70499 * 13 12 11 15 15 S 1.65606 * 119.99764 * 359.72130 * 14 13 12 16 16 O 1.42095 * 106.40080 * 311.46225 * 15 14 13 17 17 O 1.42099 * 106.39876 * 178.54239 * 15 14 13 18 18 C 1.76193 * 107.21626 * 65.00421 * 15 14 13 19 19 C 1.38374 * 119.84958 * 90.00132 * 18 15 14 20 20 C 1.37938 * 120.14962 * 180.22973 * 19 18 15 21 21 C 1.39629 * 119.84907 * 359.49763 * 20 19 18 22 22 C 1.47728 * 120.15132 * 180.23194 * 21 20 19 23 23 O 1.21466 * 120.00236 * 180.26129 * 22 21 20 24 24 O 1.34716 * 119.99585 * 0.26852 * 22 21 20 25 25 C 1.39622 * 119.69967 * 0.49605 * 21 20 19 26 26 C 1.37942 * 119.84758 * 359.75554 * 25 21 20 27 27 C 1.38748 * 120.68101 * 359.42425 * 13 12 11 28 28 H 0.97006 * 119.99804 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.42440 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.36593 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99946 * 179.72573 * 14 13 12 32 32 H 1.07998 * 119.91934 * 359.95008 * 19 18 15 33 33 H 1.08006 * 120.07293 * 179.71832 * 20 19 18 34 34 H 0.96702 * 116.99650 * 179.97438 * 24 22 21 35 35 H 1.08006 * 120.08039 * 179.73283 * 25 21 20 36 36 H 1.08007 * 119.92714 * 179.97438 * 26 25 21 37 37 H 1.07998 * 120.66299 * 180.30398 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6177 0.0000 4 1 3.7014 1.3464 -0.0006 5 1 1.8827 2.3963 -1.2125 6 1 1.8828 2.3964 1.2125 7 6 2.0076 -1.2126 0.0005 8 1 3.0529 -1.2329 -0.2703 9 6 1.3453 -2.4121 0.3559 10 6 1.8202 -3.6647 -0.0903 11 6 1.1517 -4.7980 0.2749 12 7 0.0760 -4.7432 1.0396 13 6 -0.4181 -3.5960 1.4829 14 7 -1.5576 -3.5999 2.2803 15 16 -2.2938 -5.0324 2.6656 16 8 -2.4341 -5.7515 1.4481 17 8 -3.3918 -4.7058 3.5064 18 6 -1.1629 -5.9496 3.6577 19 6 -1.1807 -5.8060 5.0339 20 6 -0.2950 -6.5174 5.8162 21 6 0.6139 -7.3919 5.2173 22 6 1.5621 -8.1609 6.0491 23 8 2.3548 -8.9173 5.5249 24 8 1.5473 -8.0234 7.3892 25 6 0.6264 -7.5320 3.8281 26 6 -0.2614 -6.8105 3.0573 27 6 0.1929 -2.3918 1.1644 28 1 -0.4850 0.8401 0.0004 29 1 2.7010 -3.7256 -0.7123 30 1 1.5121 -5.7580 -0.0641 31 1 -1.9212 -2.7635 2.6107 32 1 -1.8867 -5.1319 5.4960 33 1 -0.3070 -6.4009 6.8899 34 1 2.1862 -8.5476 7.8913 35 1 1.3298 -8.2034 3.3581 36 1 -0.2526 -6.9176 1.9826 37 1 -0.2071 -1.4576 1.5298 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833069188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:05 Heat of formation + Delta-G solvation = -126.652634 kcal Electronic energy + Delta-G solvation = -27523.958497 eV Core-core repulsion = 23357.154572 eV Total energy + Delta-G solvation = -4166.803925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 348.066 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55996 -40.48852 -39.74626 -38.34246 -37.21226 -36.99652 -36.46432 -35.55005 -32.87890 -32.46865 -32.20321 -30.02732 -27.93300 -26.31272 -24.00137 -23.85155 -23.22766 -22.56490 -20.70151 -19.80905 -19.28978 -19.02829 -18.77178 -18.17299 -17.75380 -17.01452 -16.78848 -16.59616 -16.13676 -15.86455 -15.83608 -15.76716 -15.06085 -14.83903 -14.79118 -14.61692 -14.34031 -14.07140 -13.92719 -13.46775 -13.27247 -13.21539 -13.09036 -12.91355 -12.69406 -12.68657 -12.38086 -12.34898 -12.08808 -11.92904 -11.88350 -11.69066 -11.21226 -10.68505 -10.19585 -10.00445 -9.92394 -8.99412 -8.68343 -6.56646 -0.99129 -0.62413 0.19487 0.91131 0.98986 1.17824 1.42006 1.54223 1.56899 1.81345 1.87441 2.19420 2.40470 2.64895 2.78026 3.27735 3.58818 3.61637 3.74545 3.81128 4.00425 4.17176 4.31268 4.47333 4.54679 4.81508 4.87363 4.91607 4.94431 4.99039 5.08783 5.12439 5.19100 5.30357 5.44041 5.55700 5.60427 5.88016 5.96536 6.23247 6.56869 6.81461 6.83022 6.84126 7.54806 8.24135 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012176 B = 0.003371 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.142296 B = 8305.260631 C = 9288.602092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.041 3.959 3 Si 0.984 3.016 4 H -0.257 1.257 5 H -0.268 1.268 6 H -0.263 1.263 7 C -0.481 4.481 8 H 0.085 0.915 9 C 0.119 3.881 10 C -0.297 4.297 11 C 0.135 3.865 12 N -0.608 5.608 13 C 0.356 3.644 14 N -1.027 6.027 15 S 2.712 3.288 16 O -0.962 6.962 17 O -0.974 6.974 18 C -0.643 4.643 19 C -0.041 4.041 20 C -0.081 4.081 21 C -0.086 4.086 22 C 0.536 3.464 23 O -0.536 6.536 24 O -0.496 6.496 25 C -0.089 4.089 26 C -0.009 4.009 27 C -0.261 4.261 28 H 0.293 0.707 29 H 0.116 0.884 30 H 0.164 0.836 31 H 0.436 0.564 32 H 0.167 0.833 33 H 0.178 0.822 34 H 0.438 0.562 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.452 -7.467 12.920 14.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.178 4.178 3 Si 0.805 3.195 4 H -0.180 1.180 5 H -0.192 1.192 6 H -0.188 1.188 7 C -0.511 4.511 8 H 0.103 0.897 9 C 0.110 3.890 10 C -0.321 4.321 11 C -0.017 4.017 12 N -0.331 5.331 13 C 0.130 3.870 14 N -0.777 5.777 15 S 2.804 3.196 16 O -0.952 6.952 17 O -0.964 6.964 18 C -0.732 4.732 19 C -0.060 4.060 20 C -0.100 4.100 21 C -0.087 4.087 22 C 0.380 3.620 23 O -0.427 6.427 24 O -0.310 6.310 25 C -0.108 4.108 26 C -0.028 4.028 27 C -0.288 4.288 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.181 0.819 31 H 0.274 0.726 32 H 0.185 0.815 33 H 0.195 0.805 34 H 0.301 0.699 35 H 0.169 0.831 36 H 0.172 0.828 37 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.098 -8.509 12.521 15.178 hybrid contribution 1.555 1.480 0.129 2.151 sum 0.457 -7.029 12.649 14.478 Atomic orbital electron populations 1.69816 1.09076 1.31054 1.33361 1.26802 0.95482 1.04614 0.90856 0.85119 0.79505 0.75963 0.78952 1.18035 1.19242 1.18794 1.19951 0.98327 0.91773 1.41038 0.89677 1.18034 0.90414 0.93479 0.87071 1.21777 1.06232 0.93659 1.10387 1.21769 0.89378 0.98318 0.92196 1.66755 1.18224 1.26017 1.22055 1.17742 0.86734 0.91317 0.91219 1.52976 1.37880 1.26119 1.60728 1.01264 0.72570 0.72435 0.73306 1.93553 1.85125 1.71930 1.44597 1.93562 1.49671 1.84031 1.69153 1.30901 1.18683 1.15007 1.08625 1.21284 0.97027 0.96957 0.90770 1.21802 0.92534 0.93336 1.02283 1.19555 0.97144 0.98849 0.93193 1.20697 0.80900 0.78681 0.81681 1.90904 1.39433 1.37629 1.74772 1.84503 1.61484 1.67043 1.17990 1.21515 0.98319 0.98803 0.92173 1.21158 0.89951 0.90081 1.01653 1.21566 1.02946 0.96022 1.08307 0.89636 0.86564 0.81912 0.72590 0.81519 0.80484 0.69944 0.83110 0.82777 0.86190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.60 10.92 21.84 0.24 -38.36 16 2 C 0.04 1.86 5.20 85.29 0.44 2.30 16 3 Si 0.98 34.77 29.59 68.60 2.03 36.80 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 5 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 6 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 7 C -0.48 -23.66 9.12 23.52 0.21 -23.45 16 8 H 0.09 4.02 7.90 -2.91 -0.02 3.99 16 9 C 0.12 5.90 5.60 -21.11 -0.12 5.78 16 10 C -0.30 -13.24 9.85 22.60 0.22 -13.02 16 11 C 0.13 5.51 11.10 84.26 0.94 6.45 16 12 N -0.61 -25.74 6.22 -194.47 -1.21 -26.95 16 13 C 0.36 15.53 7.33 132.90 0.97 16.50 16 14 N -1.03 -36.98 5.85 -55.55 -0.32 -37.30 16 15 S 2.71 92.10 5.39 -56.49 -0.30 91.79 16 16 O -0.96 -39.12 16.14 -128.00 -2.07 -41.18 16 17 O -0.97 -33.01 17.27 -128.00 -2.21 -35.22 16 18 C -0.64 -19.13 5.78 22.33 0.13 -19.00 16 19 C -0.04 -0.98 9.50 22.23 0.21 -0.77 16 20 C -0.08 -1.65 9.62 22.53 0.22 -1.43 16 21 C -0.09 -2.01 5.87 -20.10 -0.12 -2.13 16 22 C 0.54 11.33 8.27 70.33 0.58 11.91 16 23 O -0.54 -14.44 17.13 19.94 0.34 -14.10 16 24 O -0.50 -6.39 12.68 -56.26 -0.71 -7.11 16 25 C -0.09 -2.37 9.60 22.53 0.22 -2.15 16 26 C -0.01 -0.28 8.37 22.23 0.19 -0.09 16 27 C -0.26 -12.58 8.63 23.01 0.20 -12.38 16 28 H 0.29 12.52 8.29 -92.70 -0.77 11.75 16 29 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.16 5.36 8.06 -2.91 -0.02 5.33 16 31 H 0.44 13.53 8.82 -96.74 -0.85 12.68 16 32 H 0.17 3.18 7.60 -2.91 -0.02 3.16 16 33 H 0.18 2.39 7.61 -2.91 -0.02 2.37 16 34 H 0.44 1.51 9.11 -74.06 -0.67 0.83 16 35 H 0.15 3.71 7.65 -2.91 -0.02 3.69 16 36 H 0.15 4.98 6.53 -2.91 -0.02 4.96 16 37 H 0.12 5.90 6.21 -2.91 -0.02 5.88 16 Total: -1.00 -68.36 342.19 -0.27 -68.63 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.35 Total: 34.45 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 4.29 Total: -31.47 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -1.30 Total: -102.61 kcal Atomic # 8 Polarization: -92.96 SS G_CDS: -4.65 Total: -97.60 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: 92.10 SS G_CDS: -0.30 Total: 91.79 kcal Total: -68.36 -0.27 -68.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833069188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.020 kcal (2) G-P(sol) polarization free energy of solvation -68.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds