Wall clock time and date at job start Wed Apr 1 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47099 * 2 1 4 4 C 1.34950 * 126.03565 * 124.97654 * 3 2 1 5 5 C 1.35322 * 107.74397 * 179.72432 * 4 3 2 6 6 S 1.76202 * 126.04132 * 180.29184 * 5 4 3 7 7 O 1.42097 * 106.40176 * 227.43732 * 6 5 4 8 8 O 1.42101 * 106.40154 * 0.35505 * 6 5 4 9 9 N 1.65595 * 107.21666 * 113.89538 * 6 5 4 10 10 C 1.36942 * 119.99892 * 270.52037 * 9 6 5 11 11 H 1.08004 * 119.99800 * 125.38885 * 10 9 6 12 12 C 1.38806 * 120.00185 * 305.39319 * 10 9 6 13 13 N 1.31620 * 120.00479 * 153.98617 * 12 10 9 14 14 Si 1.86799 * 120.00099 * 333.98650 * 12 10 9 15 15 H 1.48495 * 109.47362 * 95.95759 * 14 12 10 16 16 H 1.48504 * 109.47404 * 215.96016 * 14 12 10 17 17 H 1.48503 * 109.47123 * 335.95747 * 14 12 10 18 18 C 1.46494 * 120.00202 * 90.52674 * 9 6 5 19 19 C 1.50699 * 109.46964 * 254.50868 * 18 9 6 20 20 O 1.20832 * 119.99935 * 359.97438 * 19 18 9 21 21 O 1.34232 * 120.00249 * 180.02562 * 19 18 9 22 22 C 1.39865 * 107.92026 * 0.43430 * 5 4 3 23 23 N 1.48024 * 125.90192 * 179.82826 * 22 5 4 24 24 O 1.21793 * 120.00175 * 156.85695 * 23 22 5 25 25 O 1.21800 * 119.99466 * 336.58373 * 23 22 5 26 26 N 1.30845 * 108.20208 * 359.55642 * 22 5 4 27 27 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46918 * 300.00144 * 1 2 3 29 29 H 1.09004 * 109.47041 * 60.00116 * 1 2 3 30 30 H 1.09005 * 109.47157 * 239.99604 * 2 1 3 31 31 H 1.09004 * 109.47041 * 119.99884 * 2 1 3 32 32 H 1.07994 * 126.13192 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00828 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47268 * 14.50247 * 18 9 6 35 35 H 1.08998 * 109.47751 * 134.51019 * 18 9 6 36 36 H 0.96696 * 117.00052 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0763 3.2120 0.5426 6 16 4.1163 4.3625 1.3788 7 8 3.3560 5.5532 1.5317 8 8 4.6916 3.6618 2.4730 9 7 5.3626 4.7321 0.3529 10 6 6.5075 3.9809 0.3679 11 1 6.8711 3.5325 -0.5449 12 6 7.2005 3.7956 1.5562 13 7 7.9525 2.7278 1.7200 14 14 7.0660 5.0617 2.9231 15 1 6.0302 4.6314 3.8962 16 1 8.3745 5.1844 3.6147 17 1 6.6866 6.3758 2.3450 18 6 5.2405 5.8627 -0.5706 19 6 5.0132 5.3473 -1.9683 20 8 4.9592 4.1575 -2.1722 21 8 4.8716 6.2098 -2.9871 22 6 2.3126 3.4724 -0.5998 23 7 2.2372 4.7648 -1.3174 24 8 1.9070 4.7923 -2.4894 25 8 2.5005 5.8013 -0.7344 26 7 1.6809 2.3746 -0.9282 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3184 1.4128 1.7363 33 1 8.4371 2.5985 2.5503 34 1 4.3980 6.4864 -0.2720 35 1 6.1564 6.4530 -0.5456 36 1 4.7273 5.8320 -3.8654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833681946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:52 Heat of formation + Delta-G solvation = -48.563690 kcal Electronic energy + Delta-G solvation = -31420.838255 eV Core-core repulsion = 26846.571257 eV Total energy + Delta-G solvation = -4574.266997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.16935 -41.20267 -39.61041 -36.42572 -36.09086 -35.92186 -35.08454 -34.90107 -34.61887 -32.35397 -31.14010 -30.03862 -27.95690 -26.98577 -24.11933 -23.65868 -22.01528 -21.24634 -20.98126 -19.22502 -19.06285 -18.37098 -17.66374 -17.59150 -17.28107 -16.75069 -16.26287 -15.80935 -15.68142 -15.42243 -15.17869 -14.94681 -14.47351 -14.23221 -13.71740 -13.17659 -13.02692 -12.97182 -12.53711 -12.42195 -12.14418 -11.91859 -11.66280 -11.55552 -11.41776 -11.36410 -11.09297 -10.98265 -10.84286 -10.73788 -10.57344 -10.41524 -10.18495 -10.12983 -9.96300 -9.69154 -9.26273 -8.98971 -8.17920 -6.77060 -4.44636 0.32445 0.94668 1.39168 1.59594 2.25056 2.42079 2.77167 3.22977 3.32087 3.44359 3.49018 4.02589 4.06811 4.26193 4.46132 4.54826 4.67957 4.73249 4.80903 4.93194 5.13664 5.19006 5.38340 5.48461 5.71811 5.73417 5.82857 5.86854 6.04448 6.51601 6.56859 6.67737 6.84970 6.99177 7.41360 7.92867 8.07751 8.45107 8.73967 8.83729 10.23878 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.007050 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.559204 B = 3970.436039 C = 5246.687220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.337 5.337 4 C 0.173 3.827 5 C -0.728 4.728 6 S 2.524 3.476 7 O -0.973 6.973 8 O -0.950 6.950 9 N -0.805 5.805 10 C -0.265 4.265 11 H 0.098 0.902 12 C 0.101 3.899 13 N -0.799 5.799 14 Si 0.850 3.150 15 H -0.232 1.232 16 H -0.281 1.281 17 H -0.254 1.254 18 C 0.124 3.876 19 C 0.448 3.552 20 O -0.506 6.506 21 O -0.516 6.516 22 C 0.206 3.794 23 N 0.048 4.952 24 O -0.138 6.138 25 O -0.102 6.102 26 N -0.222 5.222 27 H 0.082 0.918 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.209 0.791 33 H 0.286 0.714 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.057 -3.212 -2.545 9.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.123 5.123 4 C 0.025 3.975 5 C -0.817 4.817 6 S 2.623 3.377 7 O -0.962 6.962 8 O -0.939 6.939 9 N -0.627 5.627 10 C -0.416 4.416 11 H 0.116 0.884 12 C -0.119 4.119 13 N -0.433 5.433 14 Si 0.673 3.327 15 H -0.156 1.156 16 H -0.207 1.207 17 H -0.178 1.178 18 C -0.005 4.005 19 C 0.288 3.712 20 O -0.393 6.393 21 O -0.326 6.326 22 C -0.041 4.041 23 N 0.573 4.427 24 O -0.354 6.354 25 O -0.321 6.321 26 N -0.052 5.052 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.115 0.885 31 H 0.130 0.870 32 H 0.225 0.775 33 H 0.097 0.903 34 H 0.154 0.846 35 H 0.142 0.858 36 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -9.251 -4.480 -1.748 10.426 hybrid contribution 0.212 -0.033 -0.228 0.313 sum -9.039 -4.513 -1.976 10.294 Atomic orbital electron populations 1.22110 0.93087 1.03506 1.03956 1.22094 0.96666 0.75833 1.05366 1.49219 1.34041 1.09838 1.19191 1.22661 0.89408 0.91445 0.94034 1.32562 1.23153 1.14311 1.11650 1.11976 0.72877 0.73728 0.79075 1.93446 1.71532 1.44517 1.86688 1.93454 1.75157 1.75075 1.50215 1.53004 1.23290 1.33461 1.52992 1.18986 0.96794 1.27966 0.97808 0.88395 1.25825 0.92709 0.95486 0.97894 1.69837 1.24222 1.22412 1.26806 0.87208 0.79632 0.81886 0.83957 1.15621 1.20708 1.17792 1.21171 1.06819 0.89903 0.82656 1.24936 0.72250 0.85227 0.88817 1.90721 1.45913 1.17678 1.84976 1.84555 1.84175 1.43784 1.20099 1.21785 1.01339 0.86727 0.94216 1.42339 0.99071 1.00656 1.00606 1.94532 1.48632 1.93219 0.99035 1.94709 1.50140 1.18429 1.68832 1.77100 1.21344 0.95118 1.11648 0.89911 0.91725 0.90868 0.88452 0.87021 0.77471 0.90338 0.84577 0.85784 0.74135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.40 10.10 37.16 0.38 -1.03 16 2 C 0.12 1.15 7.23 -4.04 -0.03 1.12 16 3 N -0.34 -5.26 3.68 -61.36 -0.23 -5.48 16 4 C 0.17 3.02 11.07 -17.22 -0.19 2.83 16 5 C -0.73 -15.61 6.14 -40.01 -0.25 -15.85 16 6 S 2.52 59.93 4.51 -107.50 -0.49 59.45 16 7 O -0.97 -23.76 14.21 -66.52 -0.94 -24.71 16 8 O -0.95 -23.79 12.23 -57.17 -0.70 -24.49 16 9 N -0.80 -18.85 1.77 -61.09 -0.11 -18.96 16 10 C -0.26 -6.67 9.03 -15.06 -0.14 -6.81 16 11 H 0.10 2.65 7.71 -52.48 -0.40 2.24 16 12 C 0.10 2.58 4.53 -17.43 -0.08 2.50 16 13 N -0.80 -20.82 13.97 55.49 0.78 -20.04 16 14 Si 0.85 20.12 25.55 -169.99 -4.34 15.78 16 15 H -0.23 -5.75 6.15 56.52 0.35 -5.40 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.25 -5.70 7.11 56.52 0.40 -5.30 16 18 C 0.12 2.50 5.62 -5.20 -0.03 2.48 16 19 C 0.45 8.89 6.13 36.01 0.22 9.11 16 20 O -0.51 -11.52 15.70 -18.75 -0.29 -11.82 16 21 O -0.52 -8.21 13.42 -39.26 -0.53 -8.74 16 22 C 0.21 4.42 7.74 -146.40 -1.13 3.29 16 23 N 0.05 1.02 2.90 33.02 0.10 1.12 16 24 O -0.14 -2.83 19.22 -29.46 -0.57 -3.40 16 25 O -0.10 -2.20 12.21 -36.69 -0.45 -2.65 16 26 N -0.22 -4.25 12.42 33.02 0.41 -3.84 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 32 H 0.21 2.93 8.06 -52.49 -0.42 2.50 16 33 H 0.29 6.88 8.31 -40.82 -0.34 6.54 16 34 H 0.14 2.68 4.88 -51.93 -0.25 2.43 16 35 H 0.12 2.15 8.14 -51.93 -0.42 1.73 16 36 H 0.40 4.81 9.10 45.56 0.41 5.22 16 LS Contribution 326.58 15.07 4.92 4.92 Total: -1.00 -33.89 326.58 -6.07 -39.97 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -2.39 Total: 5.27 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: -1.25 Total: -2.37 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: 0.95 Total: -47.21 kcal Atomic # 8 Polarization: -72.32 SS G_CDS: -3.48 Total: -75.80 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.34 Total: 15.78 kcal Atomic # 16 Polarization: 59.93 SS G_CDS: -0.49 Total: 59.45 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.89 -6.07 -39.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833681946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.597 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds