Wall clock time and date at job start Wed Apr 1 2020 05:22:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 N 1.46495 * 109.47099 * 2 1
4 4 C 1.34950 * 126.03565 * 124.97654 * 3 2 1
5 5 C 1.35322 * 107.74397 * 179.72432 * 4 3 2
6 6 S 1.76202 * 126.04132 * 180.29184 * 5 4 3
7 7 O 1.42097 * 106.40176 * 227.43732 * 6 5 4
8 8 O 1.42101 * 106.40154 * 0.35505 * 6 5 4
9 9 N 1.65595 * 107.21666 * 113.89538 * 6 5 4
10 10 C 1.36942 * 119.99892 * 270.52037 * 9 6 5
11 11 H 1.08004 * 119.99800 * 125.38885 * 10 9 6
12 12 C 1.38806 * 120.00185 * 305.39319 * 10 9 6
13 13 N 1.31620 * 120.00479 * 153.98617 * 12 10 9
14 14 Si 1.86799 * 120.00099 * 333.98650 * 12 10 9
15 15 H 1.48495 * 109.47362 * 95.95759 * 14 12 10
16 16 H 1.48504 * 109.47404 * 215.96016 * 14 12 10
17 17 H 1.48503 * 109.47123 * 335.95747 * 14 12 10
18 18 C 1.46494 * 120.00202 * 90.52674 * 9 6 5
19 19 C 1.50699 * 109.46964 * 254.50868 * 18 9 6
20 20 O 1.20832 * 119.99935 * 359.97438 * 19 18 9
21 21 O 1.34232 * 120.00249 * 180.02562 * 19 18 9
22 22 C 1.39865 * 107.92026 * 0.43430 * 5 4 3
23 23 N 1.48024 * 125.90192 * 179.82826 * 22 5 4
24 24 O 1.21793 * 120.00175 * 156.85695 * 23 22 5
25 25 O 1.21800 * 119.99466 * 336.58373 * 23 22 5
26 26 N 1.30845 * 108.20208 * 359.55642 * 22 5 4
27 27 H 1.08999 * 109.47189 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.46918 * 300.00144 * 1 2 3
29 29 H 1.09004 * 109.47041 * 60.00116 * 1 2 3
30 30 H 1.09005 * 109.47157 * 239.99604 * 2 1 3
31 31 H 1.09004 * 109.47041 * 119.99884 * 2 1 3
32 32 H 1.07994 * 126.13192 * 0.02562 * 4 3 2
33 33 H 0.97000 * 120.00828 * 179.97438 * 13 12 10
34 34 H 1.08995 * 109.47268 * 14.50247 * 18 9 6
35 35 H 1.08998 * 109.47751 * 134.51019 * 18 9 6
36 36 H 0.96696 * 117.00052 * 180.02562 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3812 0.0000
4 6 2.8727 1.9211 0.8942
5 6 3.0763 3.2120 0.5426
6 16 4.1163 4.3625 1.3788
7 8 3.3560 5.5532 1.5317
8 8 4.6916 3.6618 2.4730
9 7 5.3626 4.7321 0.3529
10 6 6.5075 3.9809 0.3679
11 1 6.8711 3.5325 -0.5449
12 6 7.2005 3.7956 1.5562
13 7 7.9525 2.7278 1.7200
14 14 7.0660 5.0617 2.9231
15 1 6.0302 4.6314 3.8962
16 1 8.3745 5.1844 3.6147
17 1 6.6866 6.3758 2.3450
18 6 5.2405 5.8627 -0.5706
19 6 5.0132 5.3473 -1.9683
20 8 4.9592 4.1575 -2.1722
21 8 4.8716 6.2098 -2.9871
22 6 2.3126 3.4724 -0.5998
23 7 2.2372 4.7648 -1.3174
24 8 1.9070 4.7923 -2.4894
25 8 2.5005 5.8013 -0.7344
26 7 1.6809 2.3746 -0.9282
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 1.8934 -0.5139 -0.8900
31 1 1.8933 -0.5138 0.8900
32 1 3.3184 1.4128 1.7363
33 1 8.4371 2.5985 2.5503
34 1 4.3980 6.4864 -0.2720
35 1 6.1564 6.4530 -0.5456
36 1 4.7273 5.8320 -3.8654
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000833681946.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:22:51
Heat of formation + Delta-G solvation = -73.652544 kcal
Electronic energy + Delta-G solvation = -31421.926189 eV
Core-core repulsion = 26846.571257 eV
Total energy + Delta-G solvation = -4575.354932 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 348.071 amu
Computer time = 1.18 seconds
Orbital eigenvalues (eV)
-43.73589 -42.68868 -41.15875 -38.15272 -37.87504 -37.60236 -36.75141 -36.54059
-35.96326 -34.19976 -32.48907 -31.35915 -29.64455 -28.40671 -25.93057 -24.80323
-23.49996 -22.63208 -22.52281 -21.06234 -20.65398 -20.00803 -19.29201 -19.13250
-18.93580 -18.22686 -17.92163 -17.41379 -17.10758 -16.97439 -16.67919 -16.54283
-16.30690 -15.26501 -15.16016 -14.97362 -14.74253 -14.06932 -13.95638 -13.72936
-13.50458 -13.37191 -13.27659 -13.18572 -13.05280 -12.81765 -12.61077 -12.58353
-12.48764 -12.38022 -12.31155 -12.13356 -12.03215 -11.77359 -11.52508 -11.31425
-10.87212 -10.74329 -10.00144 -8.65947 -6.37602 -1.26852 -0.56351 -0.33158
0.11672 0.63292 1.16056 1.22143 1.37682 1.45226 1.55066 1.93457
2.30278 2.46191 2.63535 2.79763 2.97605 3.29438 3.62926 3.81871
3.86363 3.93783 4.08954 4.16677 4.20031 4.35693 4.51012 4.62448
4.68381 4.95038 4.99476 5.08315 5.32874 5.43243 5.56567 5.66236
6.11718 6.31687 6.86369 6.95318 7.04972 8.40633
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.011303 B = 0.007050 C = 0.005335
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2476.559204 B = 3970.436039 C = 5246.687220
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.165 4.165
2 C 0.101 3.899
3 N -0.315 5.315
4 C 0.187 3.813
5 C -0.769 4.769
6 S 2.561 3.439
7 O -0.982 6.982
8 O -0.965 6.965
9 N -0.815 5.815
10 C -0.281 4.281
11 H 0.070 0.930
12 C 0.079 3.921
13 N -0.838 5.838
14 Si 0.864 3.136
15 H -0.249 1.249
16 H -0.264 1.264
17 H -0.238 1.238
18 C 0.108 3.892
19 C 0.455 3.545
20 O -0.539 6.539
21 O -0.501 6.501
22 C 0.184 3.816
23 N 0.047 4.953
24 O -0.127 6.127
25 O -0.124 6.124
26 N -0.228 5.228
27 H 0.118 0.882
28 H 0.059 0.941
29 H 0.052 0.948
30 H 0.113 0.887
31 H 0.154 0.846
32 H 0.243 0.757
33 H 0.291 0.709
34 H 0.142 0.858
35 H 0.150 0.850
36 H 0.421 0.579
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.513 -4.256 -2.468 10.709
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.015 4.015
3 N -0.100 5.100
4 C 0.037 3.963
5 C -0.862 4.862
6 S 2.660 3.340
7 O -0.971 6.971
8 O -0.954 6.954
9 N -0.640 5.640
10 C -0.427 4.427
11 H 0.088 0.912
12 C -0.137 4.137
13 N -0.473 5.473
14 Si 0.686 3.314
15 H -0.174 1.174
16 H -0.189 1.189
17 H -0.161 1.161
18 C -0.020 4.020
19 C 0.296 3.704
20 O -0.429 6.429
21 O -0.313 6.313
22 C -0.062 4.062
23 N 0.571 4.429
24 O -0.347 6.347
25 O -0.338 6.338
26 N -0.059 5.059
27 H 0.137 0.863
28 H 0.078 0.922
29 H 0.071 0.929
30 H 0.132 0.868
31 H 0.172 0.828
32 H 0.259 0.741
33 H 0.101 0.899
34 H 0.159 0.841
35 H 0.167 0.833
36 H 0.282 0.718
Dipole moment (debyes) X Y Z Total
from point charges -10.608 -5.467 -1.678 12.051
hybrid contribution 0.326 0.160 -0.399 0.540
sum -10.282 -5.307 -2.077 11.756
Atomic orbital electron populations
1.22117 0.91944 1.05469 1.02675 1.22864 0.97695 0.72680 1.08272
1.49770 1.32267 1.10838 1.17144 1.23166 0.88386 0.90314 0.94461
1.32150 1.25199 1.15921 1.12931 1.09428 0.72808 0.73654 0.78089
1.93453 1.71673 1.45244 1.86763 1.93455 1.75708 1.75483 1.50796
1.52852 1.23101 1.34427 1.53622 1.18523 0.98568 1.28841 0.96791
0.91241 1.26127 0.92651 0.96067 0.98879 1.69853 1.26246 1.23545
1.27699 0.86951 0.80015 0.81768 0.82692 1.17379 1.18890 1.16100
1.21451 1.08336 0.89438 0.82778 1.24719 0.71491 0.84822 0.89347
1.90709 1.47609 1.19037 1.85539 1.84491 1.83347 1.42703 1.20730
1.21863 1.02526 0.87092 0.94702 1.42401 0.98914 1.00927 1.00666
1.94499 1.47868 1.93297 0.99009 1.94698 1.51306 1.18834 1.68971
1.77040 1.21069 0.95102 1.12670 0.86308 0.92228 0.92898 0.86847
0.82839 0.74109 0.89908 0.84105 0.83273 0.71835
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 24.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.14 10.10 71.98 0.73 -1.41 16
2 C 0.10 1.52 7.23 86.38 0.62 2.14 16
3 N -0.31 -8.90 3.68 -348.06 -1.28 -10.18 16
4 C 0.19 6.07 11.07 83.54 0.93 6.99 16
5 C -0.77 -32.06 6.14 21.99 0.13 -31.93 16
6 S 2.56 120.14 4.51 -56.49 -0.25 119.89 16
7 O -0.98 -47.42 14.21 -119.07 -1.69 -49.12 16
8 O -0.97 -47.75 12.23 -128.00 -1.57 -49.31 16
9 N -0.82 -38.19 1.77 -347.20 -0.61 -38.80 16
10 C -0.28 -14.41 9.03 84.03 0.76 -13.65 16
11 H 0.07 3.91 7.71 -2.91 -0.02 3.89 16
12 C 0.08 4.09 4.53 84.86 0.38 4.47 16
13 N -0.84 -44.51 13.97 21.65 0.30 -44.21 16
14 Si 0.86 40.32 25.55 68.60 1.75 42.07 16
15 H -0.25 -12.23 6.15 99.48 0.61 -11.62 16
16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16
17 H -0.24 -10.35 7.11 99.48 0.71 -9.64 16
18 C 0.11 4.34 5.62 85.63 0.48 4.82 16
19 C 0.46 17.87 6.13 71.24 0.44 18.31 16
20 O -0.54 -24.63 15.70 21.95 0.34 -24.28 16
21 O -0.50 -15.29 13.42 -51.44 -0.69 -15.98 16
22 C 0.18 7.72 7.74 130.33 1.01 8.73 16
23 N 0.05 1.98 2.90 -49.44 -0.14 1.84 16
24 O -0.13 -5.09 19.22 18.90 0.36 -4.73 16
25 O -0.12 -5.34 12.21 25.80 0.31 -5.03 16
26 N -0.23 -8.33 12.42 -49.46 -0.61 -8.95 16
27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16
28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16
29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16
30 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16
31 H 0.15 1.11 8.07 -2.38 -0.02 1.09 16
32 H 0.24 5.96 8.06 -2.91 -0.02 5.94 16
33 H 0.29 14.23 8.31 -92.71 -0.77 13.46 16
34 H 0.14 5.50 4.88 -2.39 -0.01 5.49 16
35 H 0.15 5.07 8.14 -2.39 -0.02 5.06 16
36 H 0.42 9.40 9.10 -74.06 -0.67 8.72 16
Total: -1.00 -74.86 326.58 2.11 -72.75
By element:
Atomic # 1 Polarization: 15.16 SS G_CDS: 0.41 Total: 15.57 kcal
Atomic # 6 Polarization: -7.00 SS G_CDS: 5.48 Total: -1.52 kcal
Atomic # 7 Polarization: -97.96 SS G_CDS: -2.35 Total: -100.31 kcal
Atomic # 8 Polarization: -145.52 SS G_CDS: -2.92 Total: -148.44 kcal
Atomic # 14 Polarization: 40.32 SS G_CDS: 1.75 Total: 42.07 kcal
Atomic # 16 Polarization: 120.14 SS G_CDS: -0.25 Total: 119.89 kcal
Total: -74.86 2.11 -72.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000833681946.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -0.905 kcal
(2) G-P(sol) polarization free energy of solvation -74.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.765 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.653 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.18 seconds