Wall clock time and date at job start Wed Apr 1 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.47099 * 2 1 4 4 C 1.34950 * 126.03565 * 124.97654 * 3 2 1 5 5 C 1.35322 * 107.74397 * 179.72432 * 4 3 2 6 6 S 1.76202 * 126.04132 * 180.29184 * 5 4 3 7 7 O 1.42097 * 106.40176 * 227.43732 * 6 5 4 8 8 O 1.42101 * 106.40154 * 0.35505 * 6 5 4 9 9 N 1.65595 * 107.21666 * 113.89538 * 6 5 4 10 10 C 1.36942 * 119.99892 * 270.52037 * 9 6 5 11 11 H 1.08004 * 119.99800 * 125.38885 * 10 9 6 12 12 C 1.38806 * 120.00185 * 305.39319 * 10 9 6 13 13 N 1.31620 * 120.00479 * 153.98617 * 12 10 9 14 14 Si 1.86799 * 120.00099 * 333.98650 * 12 10 9 15 15 H 1.48495 * 109.47362 * 95.95759 * 14 12 10 16 16 H 1.48504 * 109.47404 * 215.96016 * 14 12 10 17 17 H 1.48503 * 109.47123 * 335.95747 * 14 12 10 18 18 C 1.46494 * 120.00202 * 90.52674 * 9 6 5 19 19 C 1.50699 * 109.46964 * 254.50868 * 18 9 6 20 20 O 1.20832 * 119.99935 * 359.97438 * 19 18 9 21 21 O 1.34232 * 120.00249 * 180.02562 * 19 18 9 22 22 C 1.39865 * 107.92026 * 0.43430 * 5 4 3 23 23 N 1.48024 * 125.90192 * 179.82826 * 22 5 4 24 24 O 1.21793 * 120.00175 * 156.85695 * 23 22 5 25 25 O 1.21800 * 119.99466 * 336.58373 * 23 22 5 26 26 N 1.30845 * 108.20208 * 359.55642 * 22 5 4 27 27 H 1.08999 * 109.47189 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46918 * 300.00144 * 1 2 3 29 29 H 1.09004 * 109.47041 * 60.00116 * 1 2 3 30 30 H 1.09005 * 109.47157 * 239.99604 * 2 1 3 31 31 H 1.09004 * 109.47041 * 119.99884 * 2 1 3 32 32 H 1.07994 * 126.13192 * 0.02562 * 4 3 2 33 33 H 0.97000 * 120.00828 * 179.97438 * 13 12 10 34 34 H 1.08995 * 109.47268 * 14.50247 * 18 9 6 35 35 H 1.08998 * 109.47751 * 134.51019 * 18 9 6 36 36 H 0.96696 * 117.00052 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8727 1.9211 0.8942 5 6 3.0763 3.2120 0.5426 6 16 4.1163 4.3625 1.3788 7 8 3.3560 5.5532 1.5317 8 8 4.6916 3.6618 2.4730 9 7 5.3626 4.7321 0.3529 10 6 6.5075 3.9809 0.3679 11 1 6.8711 3.5325 -0.5449 12 6 7.2005 3.7956 1.5562 13 7 7.9525 2.7278 1.7200 14 14 7.0660 5.0617 2.9231 15 1 6.0302 4.6314 3.8962 16 1 8.3745 5.1844 3.6147 17 1 6.6866 6.3758 2.3450 18 6 5.2405 5.8627 -0.5706 19 6 5.0132 5.3473 -1.9683 20 8 4.9592 4.1575 -2.1722 21 8 4.8716 6.2098 -2.9871 22 6 2.3126 3.4724 -0.5998 23 7 2.2372 4.7648 -1.3174 24 8 1.9070 4.7923 -2.4894 25 8 2.5005 5.8013 -0.7344 26 7 1.6809 2.3746 -0.9282 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3184 1.4128 1.7363 33 1 8.4371 2.5985 2.5503 34 1 4.3980 6.4864 -0.2720 35 1 6.1564 6.4530 -0.5456 36 1 4.7273 5.8320 -3.8654 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833681946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:51 Heat of formation + Delta-G solvation = -73.652544 kcal Electronic energy + Delta-G solvation = -31421.926189 eV Core-core repulsion = 26846.571257 eV Total energy + Delta-G solvation = -4575.354932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.071 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.73589 -42.68868 -41.15875 -38.15272 -37.87504 -37.60236 -36.75141 -36.54059 -35.96326 -34.19976 -32.48907 -31.35915 -29.64455 -28.40671 -25.93057 -24.80323 -23.49996 -22.63208 -22.52281 -21.06234 -20.65398 -20.00803 -19.29201 -19.13250 -18.93580 -18.22686 -17.92163 -17.41379 -17.10758 -16.97439 -16.67919 -16.54283 -16.30690 -15.26501 -15.16016 -14.97362 -14.74253 -14.06932 -13.95638 -13.72936 -13.50458 -13.37191 -13.27659 -13.18572 -13.05280 -12.81765 -12.61077 -12.58353 -12.48764 -12.38022 -12.31155 -12.13356 -12.03215 -11.77359 -11.52508 -11.31425 -10.87212 -10.74329 -10.00144 -8.65947 -6.37602 -1.26852 -0.56351 -0.33158 0.11672 0.63292 1.16056 1.22143 1.37682 1.45226 1.55066 1.93457 2.30278 2.46191 2.63535 2.79763 2.97605 3.29438 3.62926 3.81871 3.86363 3.93783 4.08954 4.16677 4.20031 4.35693 4.51012 4.62448 4.68381 4.95038 4.99476 5.08315 5.32874 5.43243 5.56567 5.66236 6.11718 6.31687 6.86369 6.95318 7.04972 8.40633 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.011303 B = 0.007050 C = 0.005335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2476.559204 B = 3970.436039 C = 5246.687220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.315 5.315 4 C 0.187 3.813 5 C -0.769 4.769 6 S 2.561 3.439 7 O -0.982 6.982 8 O -0.965 6.965 9 N -0.815 5.815 10 C -0.281 4.281 11 H 0.070 0.930 12 C 0.079 3.921 13 N -0.838 5.838 14 Si 0.864 3.136 15 H -0.249 1.249 16 H -0.264 1.264 17 H -0.238 1.238 18 C 0.108 3.892 19 C 0.455 3.545 20 O -0.539 6.539 21 O -0.501 6.501 22 C 0.184 3.816 23 N 0.047 4.953 24 O -0.127 6.127 25 O -0.124 6.124 26 N -0.228 5.228 27 H 0.118 0.882 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.113 0.887 31 H 0.154 0.846 32 H 0.243 0.757 33 H 0.291 0.709 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.513 -4.256 -2.468 10.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.015 4.015 3 N -0.100 5.100 4 C 0.037 3.963 5 C -0.862 4.862 6 S 2.660 3.340 7 O -0.971 6.971 8 O -0.954 6.954 9 N -0.640 5.640 10 C -0.427 4.427 11 H 0.088 0.912 12 C -0.137 4.137 13 N -0.473 5.473 14 Si 0.686 3.314 15 H -0.174 1.174 16 H -0.189 1.189 17 H -0.161 1.161 18 C -0.020 4.020 19 C 0.296 3.704 20 O -0.429 6.429 21 O -0.313 6.313 22 C -0.062 4.062 23 N 0.571 4.429 24 O -0.347 6.347 25 O -0.338 6.338 26 N -0.059 5.059 27 H 0.137 0.863 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.132 0.868 31 H 0.172 0.828 32 H 0.259 0.741 33 H 0.101 0.899 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -10.608 -5.467 -1.678 12.051 hybrid contribution 0.326 0.160 -0.399 0.540 sum -10.282 -5.307 -2.077 11.756 Atomic orbital electron populations 1.22117 0.91944 1.05469 1.02675 1.22864 0.97695 0.72680 1.08272 1.49770 1.32267 1.10838 1.17144 1.23166 0.88386 0.90314 0.94461 1.32150 1.25199 1.15921 1.12931 1.09428 0.72808 0.73654 0.78089 1.93453 1.71673 1.45244 1.86763 1.93455 1.75708 1.75483 1.50796 1.52852 1.23101 1.34427 1.53622 1.18523 0.98568 1.28841 0.96791 0.91241 1.26127 0.92651 0.96067 0.98879 1.69853 1.26246 1.23545 1.27699 0.86951 0.80015 0.81768 0.82692 1.17379 1.18890 1.16100 1.21451 1.08336 0.89438 0.82778 1.24719 0.71491 0.84822 0.89347 1.90709 1.47609 1.19037 1.85539 1.84491 1.83347 1.42703 1.20730 1.21863 1.02526 0.87092 0.94702 1.42401 0.98914 1.00927 1.00666 1.94499 1.47868 1.93297 0.99009 1.94698 1.51306 1.18834 1.68971 1.77040 1.21069 0.95102 1.12670 0.86308 0.92228 0.92898 0.86847 0.82839 0.74109 0.89908 0.84105 0.83273 0.71835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 10.10 71.98 0.73 -1.41 16 2 C 0.10 1.52 7.23 86.38 0.62 2.14 16 3 N -0.31 -8.90 3.68 -348.06 -1.28 -10.18 16 4 C 0.19 6.07 11.07 83.54 0.93 6.99 16 5 C -0.77 -32.06 6.14 21.99 0.13 -31.93 16 6 S 2.56 120.14 4.51 -56.49 -0.25 119.89 16 7 O -0.98 -47.42 14.21 -119.07 -1.69 -49.12 16 8 O -0.97 -47.75 12.23 -128.00 -1.57 -49.31 16 9 N -0.82 -38.19 1.77 -347.20 -0.61 -38.80 16 10 C -0.28 -14.41 9.03 84.03 0.76 -13.65 16 11 H 0.07 3.91 7.71 -2.91 -0.02 3.89 16 12 C 0.08 4.09 4.53 84.86 0.38 4.47 16 13 N -0.84 -44.51 13.97 21.65 0.30 -44.21 16 14 Si 0.86 40.32 25.55 68.60 1.75 42.07 16 15 H -0.25 -12.23 6.15 99.48 0.61 -11.62 16 16 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.24 -10.35 7.11 99.48 0.71 -9.64 16 18 C 0.11 4.34 5.62 85.63 0.48 4.82 16 19 C 0.46 17.87 6.13 71.24 0.44 18.31 16 20 O -0.54 -24.63 15.70 21.95 0.34 -24.28 16 21 O -0.50 -15.29 13.42 -51.44 -0.69 -15.98 16 22 C 0.18 7.72 7.74 130.33 1.01 8.73 16 23 N 0.05 1.98 2.90 -49.44 -0.14 1.84 16 24 O -0.13 -5.09 19.22 18.90 0.36 -4.73 16 25 O -0.12 -5.34 12.21 25.80 0.31 -5.03 16 26 N -0.23 -8.33 12.42 -49.46 -0.61 -8.95 16 27 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.15 1.11 8.07 -2.38 -0.02 1.09 16 32 H 0.24 5.96 8.06 -2.91 -0.02 5.94 16 33 H 0.29 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.14 5.50 4.88 -2.39 -0.01 5.49 16 35 H 0.15 5.07 8.14 -2.39 -0.02 5.06 16 36 H 0.42 9.40 9.10 -74.06 -0.67 8.72 16 Total: -1.00 -74.86 326.58 2.11 -72.75 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: 0.41 Total: 15.57 kcal Atomic # 6 Polarization: -7.00 SS G_CDS: 5.48 Total: -1.52 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -2.35 Total: -100.31 kcal Atomic # 8 Polarization: -145.52 SS G_CDS: -2.92 Total: -148.44 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 1.75 Total: 42.07 kcal Atomic # 16 Polarization: 120.14 SS G_CDS: -0.25 Total: 119.89 kcal Total: -74.86 2.11 -72.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833681946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.905 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds