Wall clock time and date at job start Wed Apr 1 2020 04:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34654 * 117.00215 * 2 1 4 4 O 1.21514 * 119.99915 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99626 * 180.27405 * 3 2 1 6 6 C 1.40016 * 119.99261 * 175.23899 * 5 3 2 7 7 C 1.38838 * 120.07669 * 34.68930 * 6 5 3 8 8 C 1.38119 * 119.94503 * 179.69269 * 7 6 5 9 9 C 1.38298 * 120.08760 * 0.57951 * 8 7 6 10 10 S 1.76200 * 119.92251 * 179.69918 * 9 8 7 11 11 O 1.42097 * 106.40496 * 23.55978 * 10 9 8 12 12 O 1.42100 * 106.39992 * 156.47937 * 10 9 8 13 13 N 1.65598 * 107.21733 * 270.01475 * 10 9 8 14 14 C 1.46502 * 119.99538 * 65.00753 * 13 10 9 15 15 C 1.50701 * 109.47005 * 164.99796 * 14 13 10 16 16 H 1.08001 * 119.99964 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00034 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00058 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46983 * 90.00627 * 19 17 15 21 21 H 1.48507 * 109.47027 * 210.00458 * 19 17 15 22 22 H 1.48500 * 109.47036 * 330.00482 * 19 17 15 23 23 C 1.38256 * 120.14710 * 359.71556 * 9 8 7 24 24 C 1.38234 * 120.05910 * 359.97438 * 23 9 8 25 25 Cl 1.73596 * 120.04335 * 179.97438 * 24 23 9 26 26 H 1.09006 * 109.47196 * 60.00111 * 1 2 3 27 27 H 1.09003 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00329 * 1 2 3 29 29 H 0.96996 * 120.00351 * 355.23984 * 5 3 2 30 30 H 1.08004 * 120.02869 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.95455 * 180.29666 * 8 7 6 32 32 H 0.97000 * 120.00556 * 245.00306 * 13 10 9 33 33 H 1.09002 * 109.47084 * 284.99325 * 14 13 10 34 34 H 1.08998 * 109.47344 * 44.99513 * 14 13 10 35 35 H 0.97004 * 119.99883 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.96944 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 -0.0005 5 7 3.4092 1.2702 -0.0056 6 6 4.0446 2.5138 -0.1062 7 6 3.4801 3.6338 0.4890 8 6 4.1124 4.8580 0.3934 9 6 5.3009 4.9718 -0.3045 10 16 6.0999 6.5372 -0.4304 11 8 5.6471 7.3088 0.6736 12 8 7.4727 6.2681 -0.6797 13 7 5.5143 7.2784 -1.7906 14 6 4.1020 7.6608 -1.8659 15 6 3.9024 8.6229 -3.0085 16 1 4.7433 8.9195 -3.6179 17 6 2.6461 9.1236 -3.2766 18 7 1.6220 8.7620 -2.5348 19 14 2.3987 10.3168 -4.6925 20 1 2.0887 9.5580 -5.9307 21 1 1.2723 11.2319 -4.3776 22 1 3.6384 11.1089 -4.8945 23 6 5.8633 3.8601 -0.9039 24 6 5.2389 2.6307 -0.8067 25 17 5.9451 1.2352 -1.5600 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.9376 0.4594 0.0601 30 1 2.5494 3.5470 1.0302 31 1 3.6758 5.7284 0.8604 32 1 6.1062 7.4595 -2.5374 33 1 3.4931 6.7716 -2.0291 34 1 3.8047 8.1385 -0.9324 35 1 0.7382 9.1146 -2.7232 36 1 6.7918 3.9522 -1.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859134890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:02 Heat of formation + Delta-G solvation = -127.527164 kcal Electronic energy + Delta-G solvation = -25784.088951 eV Core-core repulsion = 21614.814254 eV Total energy + Delta-G solvation = -4169.274697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.28074 -39.48219 -37.04923 -36.80138 -36.68385 -35.42675 -35.30174 -34.64328 -32.16179 -31.02966 -30.33849 -27.81282 -26.75203 -24.00922 -23.19671 -22.49719 -21.59138 -19.42720 -19.18470 -18.20816 -17.75822 -17.26892 -16.99949 -16.49687 -16.01468 -15.77986 -15.17450 -15.08838 -14.56976 -14.52092 -14.15429 -13.89812 -13.68831 -13.50205 -13.24995 -12.63672 -12.46556 -12.15052 -12.01345 -11.84325 -11.82741 -11.65647 -11.52627 -11.47306 -11.20874 -11.06974 -11.00306 -10.91496 -10.74059 -10.47512 -10.12507 -9.44202 -9.05298 -8.93669 -8.73708 -8.25077 -6.17442 -4.22355 0.47082 0.92175 1.02534 1.57906 1.83133 2.34124 3.19011 3.25962 3.32595 3.35682 3.67097 3.70634 4.19141 4.34898 4.44343 4.72772 4.79894 4.89344 4.90164 5.06345 5.15189 5.19484 5.23017 5.47689 5.65646 5.72895 5.84408 5.99126 6.09055 6.40422 6.55511 6.78656 7.27164 7.32217 7.76654 7.79614 7.79877 8.16236 8.81480 9.42730 10.92807 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.003674 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.114184 B = 7618.284660 C = 9322.173787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.366 6.366 3 C 0.650 3.350 4 O -0.539 6.539 5 N -0.650 5.650 6 C 0.215 3.785 7 C -0.129 4.129 8 C 0.014 3.986 9 C -0.672 4.672 10 S 2.693 3.307 11 O -0.957 6.957 12 O -0.976 6.976 13 N -1.100 6.100 14 C 0.244 3.756 15 C -0.531 4.531 16 H 0.066 0.934 17 C 0.062 3.938 18 N -0.889 5.889 19 Si 0.903 3.097 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C 0.011 3.989 24 C -0.085 4.085 25 Cl -0.060 7.060 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.421 0.579 30 H 0.159 0.841 31 H 0.156 0.844 32 H 0.412 0.588 33 H 0.023 0.977 34 H 0.040 0.960 35 H 0.266 0.734 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -19.134 5.524 20.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 O -0.280 6.280 3 C 0.403 3.597 4 O -0.425 6.425 5 N -0.302 5.302 6 C 0.119 3.881 7 C -0.150 4.150 8 C -0.006 4.006 9 C -0.756 4.756 10 S 2.779 3.221 11 O -0.946 6.946 12 O -0.966 6.966 13 N -0.863 5.863 14 C 0.121 3.879 15 C -0.570 4.570 16 H 0.084 0.916 17 C -0.141 4.141 18 N -0.527 5.527 19 Si 0.730 3.270 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.009 4.009 24 C -0.115 4.115 25 Cl -0.031 7.031 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.259 0.741 30 H 0.177 0.823 31 H 0.174 0.826 32 H 0.247 0.753 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.076 0.924 36 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 2.117 -18.584 6.221 19.711 hybrid contribution -0.468 -0.537 -1.428 1.596 sum 1.648 -19.121 4.794 19.781 Atomic orbital electron populations 1.23326 0.73367 1.03886 1.03380 1.86239 1.24928 1.30147 1.86680 1.18014 0.82708 0.82775 0.76180 1.91093 1.64111 1.34353 1.52916 1.41960 1.04070 1.08968 1.75180 1.17354 0.91009 0.84969 0.94747 1.21427 1.01832 0.90971 1.00772 1.21068 0.90361 0.98249 0.90893 1.31378 1.10336 1.22281 1.11650 1.01903 0.72772 0.73333 0.74070 1.93579 1.82296 1.67029 1.51743 1.93536 1.31545 1.85815 1.85721 1.55449 1.22095 1.73889 1.34884 1.19133 0.73659 0.95952 0.99148 1.21174 0.94461 1.27014 1.14375 0.91558 1.24966 0.95702 0.96640 0.96833 1.69936 1.00059 1.43881 1.38782 0.86419 0.77999 0.80652 0.81887 1.20546 1.21026 1.19669 1.20608 0.98068 0.88753 0.93501 1.20659 0.97331 0.90092 1.03377 1.98364 1.83412 1.40607 1.80693 0.91278 0.87568 0.91376 0.74131 0.82343 0.82607 0.75341 0.95912 0.94187 0.92430 0.82657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.39 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.60 10.62 -40.36 -0.43 -4.03 16 3 C 0.65 7.99 8.59 54.05 0.46 8.45 16 4 O -0.54 -8.32 13.55 -19.28 -0.26 -8.59 16 5 N -0.65 -7.19 5.05 -14.24 -0.07 -7.26 16 6 C 0.21 2.86 6.31 -83.63 -0.53 2.33 16 7 C -0.13 -1.88 8.70 -39.40 -0.34 -2.23 16 8 C 0.01 0.22 9.51 -39.60 -0.38 -0.16 16 9 C -0.67 -10.69 5.95 -39.55 -0.24 -10.92 16 10 S 2.69 48.00 5.74 -107.50 -0.62 47.38 16 11 O -0.96 -19.61 16.75 -57.17 -0.96 -20.57 16 12 O -0.98 -17.91 17.27 -57.17 -0.99 -18.90 16 13 N -1.10 -21.51 5.99 -11.65 -0.07 -21.58 16 14 C 0.24 5.90 5.98 -5.19 -0.03 5.87 16 15 C -0.53 -14.03 9.27 -34.44 -0.32 -14.35 16 16 H 0.07 1.67 7.65 -52.49 -0.40 1.27 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 19 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 C 0.01 0.16 9.30 -39.58 -0.37 -0.21 16 24 C -0.08 -1.11 6.34 -39.32 -0.25 -1.36 16 25 Cl -0.06 -0.64 27.96 -51.86 -1.45 -2.09 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.42 3.52 8.19 -40.82 -0.33 3.18 16 30 H 0.16 2.27 6.20 -52.48 -0.33 1.95 16 31 H 0.16 2.39 7.61 -52.49 -0.40 1.99 16 32 H 0.41 7.30 8.54 -34.47 -0.29 7.01 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 1.04 7.75 -51.93 -0.40 0.63 16 35 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.16 1.97 7.61 -52.49 -0.40 1.57 16 LS Contribution 347.45 15.07 5.24 5.24 Total: -1.00 -33.51 347.45 -8.29 -41.80 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -3.38 Total: 6.95 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.01 Total: -9.53 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: 0.59 Total: -53.36 kcal Atomic # 8 Polarization: -49.45 SS G_CDS: -2.63 Total: -52.08 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 48.00 SS G_CDS: -0.62 Total: 47.38 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.45 Total: -2.09 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.51 -8.29 -41.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859134890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.727 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds