Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34654 * 117.00215 * 2 1 4 4 O 1.21514 * 119.99915 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99626 * 180.27405 * 3 2 1 6 6 C 1.40016 * 119.99261 * 175.23899 * 5 3 2 7 7 C 1.38838 * 120.07669 * 34.68930 * 6 5 3 8 8 C 1.38119 * 119.94503 * 179.69269 * 7 6 5 9 9 C 1.38298 * 120.08760 * 0.57951 * 8 7 6 10 10 S 1.76200 * 119.92251 * 179.69918 * 9 8 7 11 11 O 1.42097 * 106.40496 * 23.55978 * 10 9 8 12 12 O 1.42100 * 106.39992 * 156.47937 * 10 9 8 13 13 N 1.65598 * 107.21733 * 270.01475 * 10 9 8 14 14 C 1.46502 * 119.99538 * 65.00753 * 13 10 9 15 15 C 1.50701 * 109.47005 * 164.99796 * 14 13 10 16 16 H 1.08001 * 119.99964 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00034 * 179.97438 * 15 14 13 18 18 N 1.31515 * 119.99779 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00058 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46983 * 90.00627 * 19 17 15 21 21 H 1.48507 * 109.47027 * 210.00458 * 19 17 15 22 22 H 1.48500 * 109.47036 * 330.00482 * 19 17 15 23 23 C 1.38256 * 120.14710 * 359.71556 * 9 8 7 24 24 C 1.38234 * 120.05910 * 359.97438 * 23 9 8 25 25 Cl 1.73596 * 120.04335 * 179.97438 * 24 23 9 26 26 H 1.09006 * 109.47196 * 60.00111 * 1 2 3 27 27 H 1.09003 * 109.47361 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47493 * 300.00329 * 1 2 3 29 29 H 0.96996 * 120.00351 * 355.23984 * 5 3 2 30 30 H 1.08004 * 120.02869 * 359.97438 * 7 6 5 31 31 H 1.07995 * 119.95455 * 180.29666 * 8 7 6 32 32 H 0.97000 * 120.00556 * 245.00306 * 13 10 9 33 33 H 1.09002 * 109.47084 * 284.99325 * 14 13 10 34 34 H 1.08998 * 109.47344 * 44.99513 * 14 13 10 35 35 H 0.97004 * 119.99883 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.96944 * 180.02562 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4015 2.2189 -0.0005 5 7 3.4092 1.2702 -0.0056 6 6 4.0446 2.5138 -0.1062 7 6 3.4801 3.6338 0.4890 8 6 4.1124 4.8580 0.3934 9 6 5.3009 4.9718 -0.3045 10 16 6.0999 6.5372 -0.4304 11 8 5.6471 7.3088 0.6736 12 8 7.4727 6.2681 -0.6797 13 7 5.5143 7.2784 -1.7906 14 6 4.1020 7.6608 -1.8659 15 6 3.9024 8.6229 -3.0085 16 1 4.7433 8.9195 -3.6179 17 6 2.6461 9.1236 -3.2766 18 7 1.6220 8.7620 -2.5348 19 14 2.3987 10.3168 -4.6925 20 1 2.0887 9.5580 -5.9307 21 1 1.2723 11.2319 -4.3776 22 1 3.6384 11.1089 -4.8945 23 6 5.8633 3.8601 -0.9039 24 6 5.2389 2.6307 -0.8067 25 17 5.9451 1.2352 -1.5600 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.9376 0.4594 0.0601 30 1 2.5494 3.5470 1.0302 31 1 3.6758 5.7284 0.8604 32 1 6.1062 7.4595 -2.5374 33 1 3.4931 6.7716 -2.0291 34 1 3.8047 8.1385 -0.9324 35 1 0.7382 9.1146 -2.7232 36 1 6.7918 3.9522 -1.4479 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859134890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = -153.341434 kcal Electronic energy + Delta-G solvation = -25785.208342 eV Core-core repulsion = 21614.814254 eV Total energy + Delta-G solvation = -4170.394088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 3.72 seconds Orbital eigenvalues (eV) -42.26974 -40.52483 -38.31730 -37.96157 -37.70428 -36.94240 -36.48462 -36.36165 -34.11751 -32.17494 -31.42870 -28.71889 -28.50480 -25.09379 -24.51437 -24.27064 -22.59873 -20.69520 -20.31756 -19.43360 -19.17365 -18.72164 -17.91796 -17.73064 -17.48975 -17.21957 -16.69072 -16.26915 -16.16435 -15.41683 -15.29598 -15.15954 -14.91611 -14.62535 -14.53111 -14.35722 -14.06359 -13.57303 -13.27147 -13.20016 -13.09131 -12.97653 -12.87988 -12.74402 -12.56396 -12.51134 -12.15951 -12.14673 -12.04240 -11.95164 -11.65162 -11.39883 -10.84010 -10.19458 -10.10220 -9.82551 -8.22898 -6.34837 -0.75062 -0.48704 -0.12100 0.65350 0.82243 1.33790 1.46135 1.47100 1.58071 1.96335 2.25824 2.44179 2.74470 2.85170 3.12429 3.26846 3.45123 3.77493 3.93405 4.04207 4.25392 4.28298 4.32771 4.54530 4.61468 4.65542 4.67188 4.78403 4.88786 5.11445 5.29737 5.32921 5.39849 5.76200 5.87756 5.99276 6.33310 6.79663 6.87544 7.34892 8.88079 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.009646 B = 0.003674 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.114184 B = 7618.284660 C = 9322.173787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.359 6.359 3 C 0.650 3.350 4 O -0.574 6.574 5 N -0.638 5.638 6 C 0.222 3.778 7 C -0.136 4.136 8 C 0.000 4.000 9 C -0.679 4.679 10 S 2.713 3.287 11 O -0.987 6.987 12 O -0.977 6.977 13 N -1.100 6.100 14 C 0.257 3.743 15 C -0.549 4.549 16 H 0.076 0.924 17 C 0.008 3.992 18 N -0.926 5.926 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.262 1.262 23 C 0.010 3.990 24 C -0.083 4.083 25 Cl -0.032 7.032 26 H 0.061 0.939 27 H 0.144 0.856 28 H 0.067 0.933 29 H 0.435 0.565 30 H 0.159 0.841 31 H 0.149 0.851 32 H 0.420 0.580 33 H 0.011 0.989 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.829 -20.833 4.424 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 O -0.272 6.272 3 C 0.405 3.595 4 O -0.462 6.462 5 N -0.291 5.291 6 C 0.125 3.875 7 C -0.157 4.157 8 C -0.020 4.020 9 C -0.767 4.767 10 S 2.803 3.197 11 O -0.977 6.977 12 O -0.968 6.968 13 N -0.862 5.862 14 C 0.132 3.868 15 C -0.588 4.588 16 H 0.094 0.906 17 C -0.192 4.192 18 N -0.565 5.565 19 Si 0.795 3.205 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.186 1.186 23 C -0.011 4.011 24 C -0.113 4.113 25 Cl -0.003 7.003 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.086 0.914 29 H 0.276 0.724 30 H 0.176 0.824 31 H 0.167 0.833 32 H 0.256 0.744 33 H 0.029 0.971 34 H 0.034 0.966 35 H 0.077 0.923 36 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 2.723 -20.296 5.110 21.106 hybrid contribution -0.649 -0.214 -1.046 1.250 sum 2.074 -20.510 4.064 21.011 Atomic orbital electron populations 1.23669 0.71743 1.06267 1.03036 1.86273 1.26405 1.28408 1.86083 1.18162 0.82816 0.83029 0.75499 1.91081 1.64915 1.35753 1.54495 1.41856 1.03964 1.08773 1.74472 1.17374 0.90926 0.85414 0.93757 1.21431 1.01873 0.91111 1.01253 1.21084 0.90695 0.98711 0.91488 1.30918 1.10833 1.21487 1.13504 1.01062 0.72408 0.73390 0.72842 1.93537 1.82755 1.68710 1.52745 1.93526 1.31653 1.86010 1.85570 1.55260 1.20390 1.74862 1.35716 1.18700 0.75735 0.94921 0.97428 1.21631 0.94974 1.27266 1.14937 0.90568 1.25876 0.95477 0.98384 0.99420 1.70062 1.00551 1.45278 1.40594 0.85357 0.78080 0.78379 0.78642 1.19756 1.20962 1.18646 1.20835 0.98553 0.88619 0.93047 1.20648 0.97032 0.90736 1.02860 1.98377 1.82945 1.38865 1.80103 0.92031 0.83792 0.91408 0.72392 0.82395 0.83322 0.74380 0.97102 0.96638 0.92343 0.80959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -6.40 10.62 -55.64 -0.59 -6.99 16 3 C 0.65 15.28 8.59 129.79 1.12 16.40 16 4 O -0.57 -17.66 13.55 19.80 0.27 -17.40 16 5 N -0.64 -13.09 5.05 -429.36 -2.17 -15.26 16 6 C 0.22 5.68 6.31 38.15 0.24 5.92 16 7 C -0.14 -3.99 8.70 22.39 0.19 -3.80 16 8 C 0.00 0.01 9.51 22.26 0.21 0.22 16 9 C -0.68 -21.67 5.95 22.29 0.13 -21.53 16 10 S 2.71 97.63 5.74 -56.49 -0.32 97.31 16 11 O -0.99 -41.70 16.75 -128.00 -2.14 -43.84 16 12 O -0.98 -35.12 17.27 -128.00 -2.21 -37.33 16 13 N -1.10 -43.45 5.99 -190.78 -1.14 -44.60 16 14 C 0.26 12.74 5.98 85.63 0.51 13.25 16 15 C -0.55 -29.18 9.27 25.60 0.24 -28.94 16 16 H 0.08 3.79 7.65 -2.91 -0.02 3.77 16 17 C 0.01 0.46 5.46 84.65 0.46 0.92 16 18 N -0.93 -53.54 13.29 21.45 0.28 -53.26 16 19 Si 0.97 42.28 29.54 68.60 2.03 44.31 16 20 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 23 C 0.01 0.27 9.30 22.27 0.21 0.47 16 24 C -0.08 -2.03 6.34 22.44 0.14 -1.89 16 25 Cl -0.03 -0.61 27.96 -2.72 -0.08 -0.68 16 26 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 27 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.44 6.26 8.19 -92.71 -0.76 5.50 16 30 H 0.16 4.65 6.20 -2.91 -0.02 4.63 16 31 H 0.15 4.89 7.61 -2.91 -0.02 4.87 16 32 H 0.42 14.80 8.54 -96.74 -0.83 13.97 16 33 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.02 0.85 7.75 -2.39 -0.02 0.83 16 35 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 36 H 0.17 4.03 7.61 -2.91 -0.02 4.01 16 Total: -1.00 -71.27 347.45 -1.84 -73.11 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.42 Total: 21.83 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.65 Total: -17.21 kcal Atomic # 7 Polarization: -110.09 SS G_CDS: -3.03 Total: -113.11 kcal Atomic # 8 Polarization: -100.88 SS G_CDS: -4.68 Total: -105.56 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 97.63 SS G_CDS: -0.32 Total: 97.31 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -0.08 Total: -0.68 kcal Total: -71.27 -1.84 -73.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859134890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.230 kcal (2) G-P(sol) polarization free energy of solvation -71.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.72 seconds