Wall clock time and date at job start Wed Apr 1 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48498 * 109.47680 * 240.00037 * 3 2 1 5 5 H 1.48508 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47279 * 119.99722 * 3 2 1 7 7 C 1.38648 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00210 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00021 * 185.04444 * 9 7 2 11 11 C 1.38938 * 120.04011 * 354.17500 * 10 9 7 12 12 C 1.38113 * 120.04435 * 180.29496 * 11 10 9 13 13 C 1.38236 * 120.11749 * 359.95930 * 12 11 10 14 14 C 1.38780 * 120.08354 * 0.04328 * 13 12 11 15 15 O 1.35898 * 120.02188 * 179.97438 * 14 13 12 16 16 S 1.52199 * 114.00239 * 270.01894 * 15 14 13 17 17 O 1.42099 * 104.28023 * 191.06992 * 16 15 14 18 18 O 1.42103 * 104.27643 * 318.92914 * 16 15 14 19 19 C 1.81399 * 104.44701 * 74.99805 * 16 15 14 20 20 C 1.53005 * 109.47124 * 179.97438 * 19 16 15 21 21 H 1.09003 * 112.85107 * 316.19952 * 20 19 16 22 22 C 1.53782 * 113.61061 * 87.50501 * 20 19 16 23 23 C 1.53781 * 87.08083 * 139.98142 * 22 20 19 24 24 C 1.53781 * 113.61199 * 185.00069 * 20 19 16 25 25 F 1.39899 * 113.61745 * 334.56977 * 24 20 19 26 26 F 1.39905 * 113.61432 * 105.47487 * 24 20 19 27 27 C 1.38614 * 119.96217 * 359.97438 * 14 13 12 28 28 H 0.96997 * 120.00728 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.98497 * 0.27732 * 11 10 9 30 30 H 1.07998 * 119.94370 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.95852 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.47578 * 300.00526 * 19 16 15 33 33 H 1.09003 * 109.47259 * 60.00161 * 19 16 15 34 34 H 1.09000 * 113.61394 * 254.52982 * 22 20 19 35 35 H 1.09003 * 113.61398 * 25.43560 * 22 20 19 36 36 H 1.09000 * 113.61793 * 220.01758 * 23 22 20 37 37 H 1.09000 * 113.69321 * 89.12204 * 23 22 20 38 38 H 1.07993 * 120.06843 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2124 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1053 11 6 3.4578 -3.4392 0.0854 12 6 4.2060 -4.5957 0.1869 13 6 3.5767 -5.8204 0.3094 14 6 2.1909 -5.8916 0.3297 15 8 1.5736 -7.0963 0.4496 16 16 1.2792 -7.7761 -0.8800 17 8 0.4203 -8.8556 -0.5391 18 8 0.8322 -6.7217 -1.7213 19 6 2.8901 -8.3961 -1.4377 20 6 2.7247 -9.1093 -2.7813 21 1 1.8528 -9.7629 -2.8091 22 6 2.8321 -8.1704 -3.9944 23 6 3.6262 -9.2885 -4.6902 24 6 4.0135 -9.7799 -3.2854 25 9 5.1821 -9.1927 -2.7887 26 9 4.0074 -11.1731 -3.1576 27 6 1.4367 -4.7331 0.2277 28 1 -0.4851 0.8400 -0.0004 29 1 3.9518 -2.4836 -0.0098 30 1 5.2846 -4.5431 0.1709 31 1 4.1643 -6.7231 0.3890 32 1 3.5812 -7.5611 -1.5519 33 1 3.2848 -9.0962 -0.7014 34 1 1.8736 -7.9564 -4.4671 35 1 3.4197 -7.2728 -3.8011 36 1 4.4718 -8.9251 -5.2742 37 1 3.0017 -9.9912 -5.2418 38 1 0.3582 -4.7865 0.2429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867406770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:47 Heat of formation + Delta-G solvation = -177.649850 kcal Electronic energy + Delta-G solvation = -28745.385700 eV Core-core repulsion = 24125.681184 eV Total energy + Delta-G solvation = -4619.704517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.13982 -47.45908 -40.71814 -38.76772 -38.53775 -37.15405 -36.15938 -35.98170 -32.50757 -31.13727 -30.15018 -28.97798 -25.61591 -25.37295 -24.43688 -23.05700 -22.00854 -20.59098 -20.25451 -18.77389 -18.22960 -17.83418 -17.59760 -17.12574 -16.71979 -16.52365 -16.35074 -15.50263 -15.19439 -14.92888 -14.75165 -14.41932 -14.32077 -14.12318 -13.88170 -13.74594 -13.72292 -13.56698 -13.17014 -12.77562 -12.71404 -12.33740 -12.14488 -12.00897 -11.97663 -11.84285 -11.68493 -11.57206 -11.43645 -11.41999 -11.30676 -11.00177 -10.91168 -10.60980 -10.42711 -9.63361 -9.04303 -8.48423 -7.60673 -6.63131 -4.22642 0.06007 1.61862 1.94763 2.26017 3.02827 3.03744 3.04387 3.08331 3.33816 3.51819 3.77920 3.80002 3.88066 3.96334 4.04772 4.18069 4.38582 4.65372 4.77806 4.89324 4.98528 5.05676 5.15321 5.19921 5.23545 5.32869 5.41181 5.49490 5.54514 5.75232 5.75695 5.96079 6.30015 6.49264 6.62197 6.73229 7.00397 7.13472 7.40001 7.78784 8.80048 9.44086 10.53319 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002868 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.258020 B = 9760.306032 C =10264.750320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.397 4.397 8 H 0.097 0.903 9 O -0.161 6.161 10 C 0.163 3.837 11 C -0.220 4.220 12 C -0.054 4.054 13 C -0.232 4.232 14 C 0.097 3.903 15 O -0.659 6.659 16 S 2.600 3.400 17 O -0.936 6.936 18 O -0.933 6.933 19 C -0.654 4.654 20 C -0.128 4.128 21 H 0.131 0.869 22 C -0.139 4.139 23 C -0.163 4.163 24 C 0.268 3.732 25 F -0.173 7.173 26 F -0.189 7.189 27 C -0.155 4.155 28 H 0.275 0.725 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.052 -15.076 -6.795 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.472 4.472 8 H 0.114 0.886 9 O -0.063 6.063 10 C 0.108 3.892 11 C -0.240 4.240 12 C -0.072 4.072 13 C -0.253 4.253 14 C 0.056 3.944 15 O -0.619 6.619 16 S 2.693 3.307 17 O -0.934 6.934 18 O -0.932 6.932 19 C -0.778 4.778 20 C -0.148 4.148 21 H 0.149 0.851 22 C -0.176 4.176 23 C -0.201 4.201 24 C 0.231 3.769 25 F -0.153 7.153 26 F -0.170 7.170 27 C -0.177 4.177 28 H 0.085 0.915 29 H 0.156 0.844 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.134 0.866 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 7.870 -14.845 -6.597 18.051 hybrid contribution 1.293 0.223 0.165 1.322 sum 9.163 -14.622 -6.433 18.416 Atomic orbital electron populations 1.70025 1.06106 1.28381 1.43853 1.25377 0.95909 0.99087 0.96003 0.85712 0.78737 0.79259 0.79354 1.19258 1.20109 1.19292 1.21378 0.91985 0.80432 1.53405 0.88593 1.83991 1.34351 1.11390 1.76567 1.18923 0.90064 0.87587 0.92659 1.21362 0.93583 0.99557 1.09503 1.20577 0.99082 0.91028 0.96506 1.20649 0.91316 0.99232 1.14152 1.17531 0.90342 0.79254 1.07313 1.85633 1.79250 1.39490 1.57504 1.05444 0.76388 0.74971 0.73861 1.93616 1.61579 1.56666 1.81558 1.93701 1.78681 1.52269 1.68543 1.30904 1.27723 1.12876 1.06326 1.23497 0.98847 0.98954 0.93515 0.85140 1.23127 1.03308 0.97146 0.94033 1.24046 1.02340 0.99232 0.94521 1.22061 0.83285 0.74393 0.97184 1.93023 1.50115 1.83190 1.88991 1.93026 1.96684 1.30511 1.96790 1.20153 1.00617 0.89202 1.07727 0.91513 0.84438 0.85754 0.85951 0.83167 0.83974 0.87769 0.87434 0.88196 0.86626 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.81 13.67 55.48 0.76 -23.05 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.95 19.17 29.55 -169.99 -5.02 14.15 16 4 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 7 C -0.40 -10.34 9.49 30.88 0.29 -10.05 16 8 H 0.10 2.24 5.20 -52.48 -0.27 1.96 16 9 O -0.16 -4.36 9.76 0.05 0.00 -4.36 16 10 C 0.16 3.72 6.64 -39.13 -0.26 3.46 16 11 C -0.22 -4.24 9.17 -39.37 -0.36 -4.60 16 12 C -0.05 -0.84 10.03 -39.63 -0.40 -1.24 16 13 C -0.23 -3.58 8.46 -39.38 -0.33 -3.91 16 14 C 0.10 1.74 4.80 -39.24 -0.19 1.56 16 15 O -0.66 -10.91 10.05 -51.74 -0.52 -11.43 16 16 S 2.60 38.24 5.16 -107.50 -0.55 37.69 16 17 O -0.94 -15.70 18.09 -67.04 -1.21 -16.91 16 18 O -0.93 -16.27 16.26 -67.04 -1.09 -17.36 16 19 C -0.65 -6.91 4.76 37.16 0.18 -6.73 16 20 C -0.13 -1.21 3.54 -89.80 -0.32 -1.52 16 21 H 0.13 1.04 8.13 -51.93 -0.42 0.62 16 22 C -0.14 -1.14 7.61 -25.92 -0.20 -1.34 16 23 C -0.16 -1.11 7.87 -25.92 -0.20 -1.32 16 24 C 0.27 2.54 3.11 -25.92 -0.08 2.46 16 25 F -0.17 -1.86 16.67 2.25 0.04 -1.83 16 26 F -0.19 -2.01 17.41 2.25 0.04 -1.97 16 27 C -0.16 -3.29 8.99 -39.25 -0.35 -3.64 16 28 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.14 2.56 5.63 -52.49 -0.30 2.26 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 31 H 0.12 1.45 7.49 -52.49 -0.39 1.06 16 32 H 0.15 1.48 6.25 -51.93 -0.32 1.16 16 33 H 0.14 1.24 8.14 -51.92 -0.42 0.82 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.11 0.90 7.90 -51.93 -0.41 0.49 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.13 2.87 8.06 -52.49 -0.42 2.45 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -32.80 345.48 -8.47 -41.27 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -3.79 Total: 4.45 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -2.32 Total: -25.86 kcal Atomic # 7 Polarization: -23.81 SS G_CDS: 0.76 Total: -23.05 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.82 Total: -50.05 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.08 Total: -3.80 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Atomic # 16 Polarization: 38.24 SS G_CDS: -0.55 Total: 37.69 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.80 -8.47 -41.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867406770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.380 kcal (2) G-P(sol) polarization free energy of solvation -32.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds