Wall clock time and date at job start Wed Apr 1 2020 05:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31551 * 1 3 3 Si 1.86800 * 119.99871 * 2 1 4 4 H 1.48498 * 109.47680 * 240.00037 * 3 2 1 5 5 H 1.48508 * 109.47119 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47279 * 119.99722 * 3 2 1 7 7 C 1.38648 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00210 * 179.97438 * 7 2 1 9 9 O 1.34832 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.35748 * 117.00021 * 185.04444 * 9 7 2 11 11 C 1.38938 * 120.04011 * 354.17500 * 10 9 7 12 12 C 1.38113 * 120.04435 * 180.29496 * 11 10 9 13 13 C 1.38236 * 120.11749 * 359.95930 * 12 11 10 14 14 C 1.38780 * 120.08354 * 0.04328 * 13 12 11 15 15 O 1.35898 * 120.02188 * 179.97438 * 14 13 12 16 16 S 1.52199 * 114.00239 * 270.01894 * 15 14 13 17 17 O 1.42099 * 104.28023 * 191.06992 * 16 15 14 18 18 O 1.42103 * 104.27643 * 318.92914 * 16 15 14 19 19 C 1.81399 * 104.44701 * 74.99805 * 16 15 14 20 20 C 1.53005 * 109.47124 * 179.97438 * 19 16 15 21 21 H 1.09003 * 112.85107 * 316.19952 * 20 19 16 22 22 C 1.53782 * 113.61061 * 87.50501 * 20 19 16 23 23 C 1.53781 * 87.08083 * 139.98142 * 22 20 19 24 24 C 1.53781 * 113.61199 * 185.00069 * 20 19 16 25 25 F 1.39899 * 113.61745 * 334.56977 * 24 20 19 26 26 F 1.39905 * 113.61432 * 105.47487 * 24 20 19 27 27 C 1.38614 * 119.96217 * 359.97438 * 14 13 12 28 28 H 0.96997 * 120.00728 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.98497 * 0.27732 * 11 10 9 30 30 H 1.07998 * 119.94370 * 179.97438 * 12 11 10 31 31 H 1.08002 * 119.95852 * 180.02562 * 13 12 11 32 32 H 1.08994 * 109.47578 * 300.00526 * 19 16 15 33 33 H 1.09003 * 109.47259 * 60.00161 * 19 16 15 34 34 H 1.09000 * 113.61394 * 254.52982 * 22 20 19 35 35 H 1.09003 * 113.61398 * 25.43560 * 22 20 19 36 36 H 1.09000 * 113.61793 * 220.01758 * 23 22 20 37 37 H 1.09000 * 113.69321 * 89.12204 * 23 22 20 38 38 H 1.07993 * 120.06843 * 179.97438 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6966 -1.2124 5 1 1.2844 2.7465 0.0006 6 1 3.1032 1.6965 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0701 -3.5045 0.1053 11 6 3.4578 -3.4392 0.0854 12 6 4.2060 -4.5957 0.1869 13 6 3.5767 -5.8204 0.3094 14 6 2.1909 -5.8916 0.3297 15 8 1.5736 -7.0963 0.4496 16 16 1.2792 -7.7761 -0.8800 17 8 0.4203 -8.8556 -0.5391 18 8 0.8322 -6.7217 -1.7213 19 6 2.8901 -8.3961 -1.4377 20 6 2.7247 -9.1093 -2.7813 21 1 1.8528 -9.7629 -2.8091 22 6 2.8321 -8.1704 -3.9944 23 6 3.6262 -9.2885 -4.6902 24 6 4.0135 -9.7799 -3.2854 25 9 5.1821 -9.1927 -2.7887 26 9 4.0074 -11.1731 -3.1576 27 6 1.4367 -4.7331 0.2277 28 1 -0.4851 0.8400 -0.0004 29 1 3.9518 -2.4836 -0.0098 30 1 5.2846 -4.5431 0.1709 31 1 4.1643 -6.7231 0.3890 32 1 3.5812 -7.5611 -1.5519 33 1 3.2848 -9.0962 -0.7014 34 1 1.8736 -7.9564 -4.4671 35 1 3.4197 -7.2728 -3.8011 36 1 4.4718 -8.9251 -5.2742 37 1 3.0017 -9.9912 -5.2418 38 1 0.3582 -4.7865 0.2429 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867406770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:46 Heat of formation + Delta-G solvation = -199.875627 kcal Electronic energy + Delta-G solvation = -28746.349482 eV Core-core repulsion = 24125.681184 eV Total energy + Delta-G solvation = -4620.668299 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.87764 -48.20712 -42.12385 -40.39616 -39.22563 -38.44575 -37.68564 -37.31199 -34.34111 -32.02396 -31.63128 -30.49267 -27.44446 -26.03536 -25.24098 -24.50660 -23.46066 -21.82692 -21.14837 -20.15532 -19.32513 -19.26828 -18.81619 -18.21370 -17.92114 -17.56189 -17.28413 -16.95101 -16.60312 -16.25597 -15.96878 -15.64408 -15.47069 -15.25217 -15.05990 -14.87560 -14.61816 -14.49029 -14.47057 -14.14114 -13.90873 -13.50334 -13.47848 -13.42550 -13.30522 -13.01348 -12.96580 -12.69802 -12.52529 -12.41796 -12.36786 -12.19203 -12.15344 -12.02289 -11.36512 -11.26106 -10.83509 -9.95107 -9.25046 -8.49107 -6.19467 -1.14572 0.15914 0.46343 0.96349 1.38911 1.49394 1.55602 2.16835 2.30131 2.46730 2.58030 2.69573 2.85837 3.01713 3.06141 3.16213 3.32133 3.35652 3.65989 3.80066 3.87017 4.05608 4.12763 4.19263 4.21097 4.44567 4.51620 4.52661 4.55607 4.75516 4.76132 4.91611 5.00504 5.08024 5.15444 5.15887 5.44237 5.52706 5.92494 5.95835 6.93878 7.68816 8.73341 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002868 C = 0.002727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.258020 B = 9760.306032 C =10264.750320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.023 2.977 4 H -0.252 1.252 5 H -0.277 1.277 6 H -0.254 1.254 7 C -0.418 4.418 8 H 0.116 0.884 9 O -0.224 6.224 10 C 0.133 3.867 11 C -0.218 4.218 12 C -0.039 4.039 13 C -0.197 4.197 14 C 0.098 3.902 15 O -0.668 6.668 16 S 2.596 3.404 17 O -0.963 6.963 18 O -0.970 6.970 19 C -0.628 4.628 20 C -0.142 4.142 21 H 0.142 0.858 22 C -0.148 4.148 23 C -0.149 4.149 24 C 0.263 3.737 25 F -0.180 7.180 26 F -0.197 7.197 27 C -0.191 4.191 28 H 0.274 0.726 29 H 0.143 0.857 30 H 0.181 0.819 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.171 0.829 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.114 0.886 37 H 0.134 0.866 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.623 -17.086 -7.458 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.842 3.158 4 H -0.176 1.176 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.493 4.493 8 H 0.134 0.866 9 O -0.130 6.130 10 C 0.081 3.919 11 C -0.238 4.238 12 C -0.057 4.057 13 C -0.218 4.218 14 C 0.057 3.943 15 O -0.627 6.627 16 S 2.696 3.304 17 O -0.961 6.961 18 O -0.968 6.968 19 C -0.757 4.757 20 C -0.162 4.162 21 H 0.160 0.840 22 C -0.185 4.185 23 C -0.187 4.187 24 C 0.226 3.774 25 F -0.160 7.160 26 F -0.178 7.178 27 C -0.213 4.213 28 H 0.083 0.917 29 H 0.161 0.839 30 H 0.199 0.801 31 H 0.195 0.805 32 H 0.184 0.816 33 H 0.189 0.811 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 12.431 -16.893 -7.234 22.186 hybrid contribution 0.045 0.347 0.370 0.509 sum 12.476 -16.546 -6.865 21.829 Atomic orbital electron populations 1.70195 1.08360 1.29178 1.47873 1.26715 0.96800 1.03088 0.95443 0.84587 0.77317 0.73684 0.80261 1.17619 1.20232 1.17758 1.21969 0.93047 0.80750 1.53535 0.86635 1.83974 1.36206 1.12650 1.80138 1.19424 0.91866 0.86963 0.93682 1.21639 0.92099 1.01611 1.08449 1.21198 1.01552 0.89261 0.93651 1.21364 0.89998 1.01441 1.08981 1.17689 0.91425 0.78755 1.06471 1.85591 1.79757 1.38724 1.58647 1.05312 0.78037 0.74106 0.72980 1.93579 1.63991 1.56779 1.81783 1.93672 1.80590 1.53699 1.68849 1.30673 1.23200 1.14047 1.07804 1.23765 0.99767 0.99668 0.93005 0.84020 1.23226 1.03960 0.97429 0.93855 1.24073 1.02715 0.98569 0.93340 1.22300 0.82567 0.73885 0.98667 1.93007 1.50527 1.83247 1.89254 1.93015 1.96670 1.31215 1.96921 1.20240 1.00094 0.90623 1.10345 0.91692 0.83916 0.80134 0.80527 0.81583 0.81143 0.87363 0.87513 0.86736 0.84738 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.67 21.61 0.30 -54.99 16 2 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 3 Si 1.02 40.30 29.55 68.60 2.03 42.33 16 4 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 5 H -0.28 -10.77 7.11 99.48 0.71 -10.07 16 6 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.42 -22.86 9.49 67.92 0.64 -22.21 16 8 H 0.12 5.48 5.20 -2.91 -0.02 5.46 16 9 O -0.22 -13.05 9.76 -22.75 -0.22 -13.27 16 10 C 0.13 6.28 6.64 22.56 0.15 6.43 16 11 C -0.22 -8.07 9.17 22.41 0.21 -7.86 16 12 C -0.04 -1.02 10.03 22.24 0.22 -0.80 16 13 C -0.20 -5.09 8.46 22.40 0.19 -4.90 16 14 C 0.10 3.39 4.80 22.49 0.11 3.50 16 15 O -0.67 -21.40 10.05 -61.49 -0.62 -22.02 16 16 S 2.60 73.88 5.16 -56.49 -0.29 73.59 16 17 O -0.96 -32.03 18.09 -118.57 -2.15 -34.18 16 18 O -0.97 -34.50 16.26 -118.57 -1.93 -36.43 16 19 C -0.63 -10.81 4.76 71.98 0.34 -10.46 16 20 C -0.14 -2.21 3.54 -10.27 -0.04 -2.24 16 21 H 0.14 1.89 8.13 -2.39 -0.02 1.87 16 22 C -0.15 -1.99 7.61 31.12 0.24 -1.76 16 23 C -0.15 -1.48 7.87 31.12 0.24 -1.23 16 24 C 0.26 3.99 3.11 31.12 0.10 4.08 16 25 F -0.18 -3.10 16.67 44.97 0.75 -2.35 16 26 F -0.20 -3.55 17.41 44.97 0.78 -2.77 16 27 C -0.19 -8.50 8.99 22.49 0.20 -8.30 16 28 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 29 H 0.14 5.09 5.63 -2.91 -0.02 5.07 16 30 H 0.18 2.88 8.06 -2.91 -0.02 2.86 16 31 H 0.18 2.75 7.49 -2.91 -0.02 2.73 16 32 H 0.17 2.39 6.25 -2.39 -0.01 2.38 16 33 H 0.17 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 1.46 7.90 -2.39 -0.02 1.44 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.11 5.19 8.06 -2.91 -0.02 5.17 16 Total: -1.00 -80.06 345.48 2.84 -77.22 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.12 Total: 19.36 kcal Atomic # 6 Polarization: -49.58 SS G_CDS: 3.07 Total: -46.50 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.30 Total: -54.99 kcal Atomic # 8 Polarization: -100.98 SS G_CDS: -4.91 Total: -105.89 kcal Atomic # 9 Polarization: -6.65 SS G_CDS: 1.53 Total: -5.12 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Atomic # 16 Polarization: 73.88 SS G_CDS: -0.29 Total: 73.59 kcal Total: -80.06 2.84 -77.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867406770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.660 kcal (2) G-P(sol) polarization free energy of solvation -80.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds