Wall clock time and date at job start Wed Apr 1 2020 04:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34229 * 116.99399 * 2 1 4 4 O 1.20824 * 120.00450 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99598 * 180.02562 * 3 2 1 6 6 C 1.52999 * 109.47158 * 179.97438 * 5 3 2 7 7 N 1.46496 * 109.47337 * 179.97438 * 6 5 3 8 8 C 1.36880 * 120.00141 * 95.05918 * 7 6 5 9 9 H 1.08007 * 119.99869 * 234.66932 * 8 7 6 10 10 C 1.39002 * 120.00182 * 54.38514 * 8 7 6 11 11 N 1.31398 * 119.99772 * 5.34833 * 10 8 7 12 12 Si 1.86798 * 120.00232 * 185.35345 * 10 8 7 13 13 H 1.48496 * 109.47487 * 59.99697 * 12 10 8 14 14 H 1.48497 * 109.47305 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.46878 * 299.99815 * 12 10 8 16 16 C 1.34778 * 120.00441 * 275.05735 * 7 6 5 17 17 O 1.21758 * 119.99653 * 356.80466 * 16 7 6 18 18 C 1.46414 * 120.00281 * 176.80540 * 16 7 6 19 19 C 1.38085 * 126.23016 * 7.62392 * 18 16 7 20 20 C 1.39748 * 107.12712 * 179.97438 * 19 18 16 21 21 Cl 1.73599 * 126.05445 * 179.97438 * 20 19 18 22 22 C 1.35763 * 107.89396 * 0.02562 * 20 19 18 23 23 Cl 1.73598 * 125.58471 * 179.97438 * 22 20 19 24 24 N 1.35719 * 108.83311 * 359.75116 * 22 20 19 25 25 C 1.46500 * 125.69653 * 180.25015 * 24 22 20 26 26 H 1.09003 * 109.47009 * 299.99685 * 1 2 3 27 27 H 1.08989 * 109.47332 * 60.00624 * 1 2 3 28 28 H 1.09005 * 109.46834 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47515 * 59.99659 * 5 3 2 30 30 H 1.09002 * 109.47445 * 299.99442 * 5 3 2 31 31 H 1.09004 * 109.46864 * 60.00277 * 6 5 3 32 32 H 1.08995 * 109.47285 * 300.00084 * 6 5 3 33 33 H 0.96998 * 119.99981 * 179.97438 * 11 10 8 34 34 H 1.08005 * 126.43563 * 359.97438 * 19 18 16 35 35 H 1.09003 * 109.47399 * 274.78771 * 25 24 22 36 36 H 1.09003 * 109.47523 * 34.78435 * 25 24 22 37 37 H 1.09004 * 109.47287 * 154.78639 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4630 2.8190 -0.0011 8 6 6.1410 2.9588 -1.1819 9 1 6.9174 2.2557 -1.4453 10 6 5.8264 4.0022 -2.0447 11 7 4.9531 4.9143 -1.6816 12 14 6.6450 4.1076 -3.7204 13 1 6.3284 2.8865 -4.5038 14 1 6.1422 5.3038 -4.4426 15 1 8.1158 4.2168 -3.5468 16 6 6.1413 2.7520 1.1616 17 8 5.5366 2.6862 2.2163 18 6 7.6055 2.7582 1.1564 19 6 8.4168 2.9753 0.0603 20 6 9.7392 2.8939 0.5046 21 17 11.1597 3.0898 -0.4739 22 6 9.7164 2.6332 1.8368 23 17 11.1111 2.4397 2.8523 24 7 8.4247 2.5536 2.2456 25 6 7.9763 2.2911 3.6153 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 3.9557 0.7810 -0.8908 30 1 3.9564 0.7808 0.8892 31 1 3.6106 3.2365 0.8890 32 1 3.6100 3.2361 -0.8910 33 1 4.7338 5.6427 -2.2835 34 1 8.0905 3.1713 -0.9504 35 1 7.9477 1.2153 3.7884 36 1 8.6679 2.7540 4.3192 37 1 6.9795 2.7085 3.7576 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871339518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:11 Heat of formation + Delta-G solvation = -70.289926 kcal Electronic energy + Delta-G solvation = -26312.008434 eV Core-core repulsion = 22143.172024 eV Total energy + Delta-G solvation = -4168.836411 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.048 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.98260 -40.11785 -38.35535 -36.51539 -36.24891 -36.06180 -35.17221 -32.47645 -32.22466 -30.87035 -28.57722 -27.39074 -26.29242 -25.22174 -23.90355 -21.38218 -20.55351 -19.94596 -19.23101 -17.96923 -17.29631 -16.33568 -16.26724 -15.97066 -15.75203 -15.35897 -14.82446 -14.60293 -13.97214 -13.75217 -13.66930 -13.48264 -13.05547 -12.81694 -12.78292 -12.69504 -12.31902 -12.09592 -11.84560 -11.76560 -11.59005 -11.28193 -11.19569 -11.17327 -10.95573 -10.78781 -10.61202 -10.51080 -10.39068 -10.20074 -10.09029 -9.20265 -8.79687 -8.21373 -7.76038 -7.49469 -6.51835 -4.43598 1.81715 1.88727 2.50336 2.58467 2.85089 2.97876 3.11167 3.16569 3.18276 3.41448 3.96778 4.25212 4.56808 4.80419 5.11242 5.18167 5.21040 5.25472 5.45257 5.54486 5.57224 5.67110 5.74710 5.86127 5.89644 6.15054 6.31543 6.44917 6.64695 6.73148 6.97086 7.13252 7.23781 7.28353 7.35049 7.79724 8.09645 8.14035 8.85531 9.17037 9.63845 10.51070 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.011186 B = 0.003922 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.428220 B = 7136.872171 C = 9032.323264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.127 4.127 6 C 0.141 3.859 7 N -0.416 5.416 8 C -0.364 4.364 9 H 0.100 0.900 10 C 0.057 3.943 11 N -0.849 5.849 12 Si 0.908 3.092 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.261 1.261 16 C 0.550 3.450 17 O -0.604 6.604 18 C 0.020 3.980 19 C -0.116 4.116 20 C -0.105 4.105 21 Cl -0.052 7.052 22 C 0.069 3.931 23 Cl -0.023 7.023 24 N -0.407 5.407 25 C 0.064 3.936 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.276 0.724 34 H 0.197 0.803 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.135 -7.063 3.296 8.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.166 4.166 6 C 0.018 3.982 7 N -0.132 5.132 8 C -0.492 4.492 9 H 0.117 0.883 10 C -0.153 4.153 11 N -0.482 5.482 12 Si 0.733 3.267 13 H -0.193 1.193 14 H -0.206 1.206 15 H -0.186 1.186 16 C 0.340 3.660 17 O -0.491 6.491 18 C -0.093 4.093 19 C -0.140 4.140 20 C -0.140 4.140 21 Cl -0.024 7.024 22 C -0.073 4.073 23 Cl 0.005 6.995 24 N -0.084 5.084 25 C -0.077 4.077 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.122 0.878 33 H 0.086 0.914 34 H 0.213 0.787 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.559 -6.657 4.086 8.219 hybrid contribution 0.533 0.179 -0.731 0.922 sum 3.092 -6.478 3.355 7.923 Atomic orbital electron populations 1.23177 0.77257 1.03082 1.02375 1.86538 1.22822 1.34337 1.84619 1.24013 0.92321 0.80929 0.71785 1.90661 1.67266 1.36215 1.45028 1.21926 0.86080 1.03149 1.05434 1.21089 0.81727 0.90670 1.04749 1.42809 1.04129 1.61818 1.04459 1.19503 1.21175 1.12286 0.96227 0.88256 1.25642 0.95747 0.94133 0.99735 1.69831 1.30263 1.11444 1.36677 0.86288 0.80437 0.78355 0.81659 1.19304 1.20601 1.18576 1.17103 0.84094 0.80306 0.84544 1.90630 1.69902 1.57473 1.31119 1.20234 0.92287 1.11881 0.84911 1.22746 0.87413 1.02177 1.01690 1.19853 0.89651 1.15453 0.89073 1.98290 1.37920 1.96532 1.69624 1.20425 0.81187 1.15430 0.90280 1.98345 1.36061 1.96448 1.68638 1.43722 1.03014 1.52681 1.09025 1.22356 1.03960 1.02654 0.78746 0.92160 0.92102 0.88594 0.87531 0.88293 0.91329 0.87765 0.91400 0.78656 0.90824 0.90534 0.86331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.58 10.57 -39.26 -0.41 -6.00 16 3 C 0.47 8.34 7.96 36.01 0.29 8.63 16 4 O -0.50 -10.36 15.73 -18.75 -0.29 -10.65 16 5 C -0.13 -2.31 6.10 -27.88 -0.17 -2.48 16 6 C 0.14 3.12 4.16 -4.04 -0.02 3.10 16 7 N -0.42 -9.51 2.40 -116.39 -0.28 -9.79 16 8 C -0.36 -8.24 6.19 -15.01 -0.09 -8.33 16 9 H 0.10 2.13 5.90 -52.48 -0.31 1.82 16 10 C 0.06 1.32 5.17 -17.45 -0.09 1.23 16 11 N -0.85 -21.26 11.90 55.50 0.66 -20.60 16 12 Si 0.91 17.97 29.46 -169.99 -5.01 12.96 16 13 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 15 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 16 C 0.55 12.53 7.56 -12.97 -0.10 12.43 16 17 O -0.60 -14.30 14.21 5.14 0.07 -14.23 16 18 C 0.02 0.42 6.80 -81.94 -0.56 -0.14 16 19 C -0.12 -2.32 9.09 -39.07 -0.36 -2.67 16 20 C -0.10 -1.90 6.66 -39.90 -0.27 -2.17 16 21 Cl -0.05 -0.84 29.12 -51.86 -1.51 -2.35 16 22 C 0.07 1.19 7.39 -16.72 -0.12 1.06 16 23 Cl -0.02 -0.33 28.60 -51.86 -1.48 -1.81 16 24 N -0.41 -7.36 3.17 -116.62 -0.37 -7.73 16 25 C 0.06 0.94 10.56 59.85 0.63 1.58 16 26 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 30 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 31 H 0.07 1.64 7.49 -51.93 -0.39 1.25 16 32 H 0.10 2.51 6.34 -51.93 -0.33 2.18 16 33 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.20 4.05 4.61 -52.48 -0.24 3.81 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 0.95 7.90 -51.93 -0.41 0.54 16 37 H 0.12 1.98 5.95 -51.93 -0.31 1.67 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -27.46 350.02 -6.80 -34.26 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -3.66 Total: 6.94 kcal Atomic # 6 Polarization: 13.50 SS G_CDS: 0.22 Total: 13.72 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.01 Total: -38.11 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.64 Total: -30.88 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.01 Total: 12.96 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -2.99 Total: -4.16 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.46 -6.80 -34.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871339518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.030 kcal (2) G-P(sol) polarization free energy of solvation -27.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds