Wall clock time and date at job start Wed Apr 1 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99740 * 2 1 4 4 C 1.52995 * 109.47012 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47224 * 67.02296 * 4 3 2 6 6 C 1.46898 * 111.00047 * 289.90754 * 5 4 3 7 7 C 1.50703 * 109.47442 * 299.64422 * 6 5 4 8 8 H 1.08005 * 119.99911 * 354.88614 * 7 6 5 9 9 C 1.37874 * 120.00201 * 174.88324 * 7 6 5 10 10 N 1.31516 * 120.00152 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47397 * 59.99940 * 11 9 7 13 13 H 1.48498 * 109.47293 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47254 * 299.99973 * 11 9 7 15 15 C 1.46897 * 110.99673 * 53.86183 * 5 4 3 16 16 C 1.53001 * 109.47170 * 66.04759 * 15 5 4 17 17 H 1.08998 * 109.47016 * 304.99693 * 16 15 5 18 18 O 1.42903 * 109.47226 * 64.99633 * 16 15 5 19 19 C 1.50695 * 109.46965 * 184.99671 * 16 15 5 20 20 C 1.35425 * 126.76539 * 100.00310 * 19 16 15 21 21 C 1.41474 * 103.98212 * 179.97438 * 20 19 16 22 22 Br 1.89097 * 126.81450 * 180.02562 * 21 20 19 23 23 N 1.30262 * 106.37058 * 359.97438 * 21 20 19 24 24 O 1.20921 * 111.58181 * 359.70050 * 23 21 20 25 25 H 1.08997 * 109.47503 * 60.00020 * 1 2 3 26 26 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46962 * 299.99643 * 1 2 3 28 28 H 1.09000 * 109.47157 * 60.00079 * 3 2 1 29 29 H 1.09004 * 109.46870 * 300.00077 * 3 2 1 30 30 H 1.09003 * 109.47273 * 307.02554 * 4 3 2 31 31 H 1.08998 * 109.47707 * 187.02241 * 4 3 2 32 32 H 1.09007 * 109.47225 * 59.64442 * 6 5 4 33 33 H 1.09001 * 109.47327 * 179.64239 * 6 5 4 34 34 H 0.96992 * 120.00261 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.47314 * 306.04353 * 15 5 4 36 36 H 1.08999 * 109.46734 * 186.04331 * 15 5 4 37 37 H 0.96706 * 113.99554 * 60.00264 * 18 16 15 38 38 H 1.08001 * 128.00468 * 0.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9804 0.6074 -1.2761 6 6 3.6026 -0.8089 -1.3731 7 6 4.2488 -1.5793 -0.2506 8 1 4.9423 -1.0855 0.4141 9 6 3.9548 -2.9144 -0.0721 10 7 3.1108 -3.5159 -0.8817 11 14 4.7564 -3.8695 1.3188 12 1 4.3977 -3.2463 2.6182 13 1 4.2776 -5.2749 1.2945 14 1 6.2315 -3.8466 1.1493 15 6 3.4516 1.3724 -2.4132 16 6 4.0651 2.7740 -2.4144 17 1 3.8866 3.2496 -1.4500 18 8 5.4722 2.6779 -2.6449 19 6 3.4324 3.5983 -3.5058 20 6 2.4489 4.5178 -3.3603 21 6 2.2265 4.9913 -4.6748 22 35 0.9751 6.3042 -5.2097 23 7 3.0556 4.3442 -5.4433 24 8 3.7373 3.5712 -4.8109 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8491 0.5390 0.8196 31 1 3.9783 2.1728 0.1250 32 1 2.5189 -0.9017 -1.3007 33 1 3.9385 -1.2098 -2.3294 34 1 2.9042 -4.4552 -0.7564 35 1 2.3679 1.4502 -2.3263 36 1 3.7059 0.8637 -3.3430 37 1 5.7053 2.2636 -3.4871 38 1 1.9505 4.8203 -2.4512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878159762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:54 Heat of formation + Delta-G solvation = -6.994470 kcal Electronic energy + Delta-G solvation = -23413.685587 eV Core-core repulsion = 19728.290118 eV Total energy + Delta-G solvation = -3685.395470 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 348.052 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.34741 -38.78476 -37.18960 -35.36729 -34.65961 -32.70709 -32.32623 -31.04938 -29.31639 -28.72751 -26.18040 -25.57227 -23.76656 -23.56801 -22.51520 -21.12358 -19.66037 -18.24810 -17.93350 -16.63039 -16.25912 -16.09875 -15.96554 -15.21062 -15.01240 -14.46831 -14.34962 -14.11882 -13.82589 -13.58699 -13.23833 -12.43925 -12.29748 -12.21549 -12.01628 -11.74304 -11.56878 -11.27614 -11.10820 -10.98774 -10.85046 -10.75090 -10.63051 -10.42192 -10.18680 -10.08156 -9.89082 -9.57269 -9.08940 -9.00306 -8.30283 -7.14108 -5.89786 -3.87766 0.77119 1.04053 1.66003 2.68545 3.40074 3.43699 3.46630 3.88751 4.30195 4.36998 4.44120 4.57376 4.59466 4.91688 5.11628 5.11779 5.21428 5.42364 5.46654 5.47445 5.58737 5.64536 5.74896 5.82304 6.03586 6.05768 6.10113 6.14961 6.71637 7.28694 7.57070 7.67443 7.75737 7.79380 7.86146 8.09053 8.27539 8.62505 9.17070 9.73464 11.21626 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002700 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.896804 B =10367.303425 C =11020.686238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C 0.020 3.980 4 C 0.056 3.944 5 N -0.518 5.518 6 C 0.183 3.817 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.278 1.278 15 C 0.019 3.981 16 C 0.195 3.805 17 H 0.130 0.870 18 O -0.531 6.531 19 C -0.036 4.036 20 C -0.203 4.203 21 C 0.006 3.994 22 Br 0.046 6.954 23 N -0.331 5.331 24 O 0.124 5.876 25 H 0.028 0.972 26 H 0.082 0.918 27 H 0.029 0.971 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.038 0.962 33 H 0.017 0.983 34 H 0.258 0.742 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.382 0.618 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 19.946 -5.640 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.260 6.260 3 C -0.059 4.059 4 C -0.073 4.073 5 N -0.241 5.241 6 C 0.059 3.941 7 C -0.533 4.533 8 H 0.076 0.924 9 C -0.142 4.142 10 N -0.538 5.538 11 Si 0.720 3.280 12 H -0.205 1.205 13 H -0.216 1.216 14 H -0.204 1.204 15 C -0.111 4.111 16 C 0.133 3.867 17 H 0.148 0.852 18 O -0.336 6.336 19 C -0.101 4.101 20 C -0.227 4.227 21 C -0.231 4.231 22 Br 0.128 6.872 23 N -0.032 5.032 24 O 0.052 5.948 25 H 0.047 0.953 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.230 0.770 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.654 20.385 -6.647 22.174 hybrid contribution -1.087 -0.710 1.006 1.642 sum -6.741 19.675 -5.641 21.549 Atomic orbital electron populations 1.22688 0.83589 1.02380 0.98303 1.88491 1.17423 1.25490 1.94577 1.23391 0.97604 0.86280 0.98629 1.22307 0.89264 0.99857 0.95825 1.62305 1.57695 1.05469 0.98660 1.20059 0.97303 0.79775 0.97004 1.20978 1.24838 0.94233 1.13263 0.92364 1.24868 0.95323 0.97696 0.96277 1.69942 1.34880 1.11040 1.37894 0.86674 0.79660 0.78819 0.82821 1.20466 1.21628 1.20410 1.22819 0.97573 0.92576 0.98090 1.20731 0.81321 0.93235 0.91373 0.85224 1.86630 1.19666 1.83166 1.44095 1.25933 0.98116 0.99731 0.86292 1.22397 1.02012 1.00313 0.97974 1.25277 1.01848 1.02780 0.93145 1.96792 1.51444 1.47193 1.91807 1.74067 1.05329 1.03821 1.20028 1.84841 1.46860 1.45882 1.17244 0.95325 0.89896 0.95237 0.94356 0.94352 0.88143 0.91306 0.94407 0.96465 0.93255 0.93842 0.90302 0.76992 0.80055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.34 -6.78 7.58 -35.23 -0.27 -7.04 16 3 C 0.02 0.31 5.69 37.16 0.21 0.52 16 4 C 0.06 0.97 5.37 -3.82 -0.02 0.95 16 5 N -0.52 -10.03 4.70 -236.07 -1.11 -11.13 16 6 C 0.18 4.50 4.30 -4.98 -0.02 4.48 16 7 C -0.49 -13.44 8.21 -34.44 -0.28 -13.72 16 8 H 0.06 1.58 6.99 -52.48 -0.37 1.21 16 9 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 10 N -0.90 -26.33 13.29 55.43 0.74 -25.60 16 11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.02 0.29 4.22 -3.83 -0.02 0.27 16 16 C 0.20 2.41 3.41 -27.88 -0.10 2.31 16 17 H 0.13 1.46 6.46 -51.93 -0.34 1.13 16 18 O -0.53 -7.07 13.27 -36.30 -0.48 -7.55 16 19 C -0.04 -0.42 6.34 -35.31 -0.22 -0.64 16 20 C -0.20 -2.18 11.09 -39.35 -0.44 -2.62 16 21 C 0.01 0.08 7.84 -16.99 -0.13 -0.06 16 22 Br 0.05 0.45 34.13 -68.01 -2.32 -1.87 16 23 N -0.33 -4.49 12.07 31.68 0.38 -4.11 16 24 O 0.12 1.59 11.17 16.07 0.18 1.77 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.55 5.79 -51.93 -0.30 0.25 16 30 H 0.10 2.03 6.33 -51.93 -0.33 1.70 16 31 H 0.07 0.98 6.66 -51.93 -0.35 0.63 16 32 H 0.04 1.01 5.29 -51.93 -0.27 0.73 16 33 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.04 0.67 5.71 -51.93 -0.30 0.38 16 36 H 0.08 1.25 8.01 -51.93 -0.42 0.84 16 37 H 0.38 4.08 9.02 45.56 0.41 4.49 16 38 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -31.38 337.26 -6.74 -38.12 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.92 Total: 1.13 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 0.00 Total: -5.40 kcal Atomic # 7 Polarization: -40.85 SS G_CDS: 0.01 Total: -40.84 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.57 Total: -12.82 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 35 Polarization: 0.45 SS G_CDS: -2.32 Total: -1.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.38 -6.74 -38.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.128 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds