Wall clock time and date at job start Wed Apr 1 2020 05:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42907 * 113.99740 * 2 1 4 4 C 1.52995 * 109.47012 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47224 * 67.02296 * 4 3 2 6 6 C 1.46898 * 111.00047 * 289.90754 * 5 4 3 7 7 C 1.50703 * 109.47442 * 299.64422 * 6 5 4 8 8 H 1.08005 * 119.99911 * 354.88614 * 7 6 5 9 9 C 1.37874 * 120.00201 * 174.88324 * 7 6 5 10 10 N 1.31516 * 120.00152 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00071 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47397 * 59.99940 * 11 9 7 13 13 H 1.48498 * 109.47293 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47254 * 299.99973 * 11 9 7 15 15 C 1.46897 * 110.99673 * 53.86183 * 5 4 3 16 16 C 1.53001 * 109.47170 * 66.04759 * 15 5 4 17 17 H 1.08998 * 109.47016 * 304.99693 * 16 15 5 18 18 O 1.42903 * 109.47226 * 64.99633 * 16 15 5 19 19 C 1.50695 * 109.46965 * 184.99671 * 16 15 5 20 20 C 1.35425 * 126.76539 * 100.00310 * 19 16 15 21 21 C 1.41474 * 103.98212 * 179.97438 * 20 19 16 22 22 Br 1.89097 * 126.81450 * 180.02562 * 21 20 19 23 23 N 1.30262 * 106.37058 * 359.97438 * 21 20 19 24 24 O 1.20921 * 111.58181 * 359.70050 * 23 21 20 25 25 H 1.08997 * 109.47503 * 60.00020 * 1 2 3 26 26 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46962 * 299.99643 * 1 2 3 28 28 H 1.09000 * 109.47157 * 60.00079 * 3 2 1 29 29 H 1.09004 * 109.46870 * 300.00077 * 3 2 1 30 30 H 1.09003 * 109.47273 * 307.02554 * 4 3 2 31 31 H 1.08998 * 109.47707 * 187.02241 * 4 3 2 32 32 H 1.09007 * 109.47225 * 59.64442 * 6 5 4 33 33 H 1.09001 * 109.47327 * 179.64239 * 6 5 4 34 34 H 0.96992 * 120.00261 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.47314 * 306.04353 * 15 5 4 36 36 H 1.08999 * 109.46734 * 186.04331 * 15 5 4 37 37 H 0.96706 * 113.99554 * 60.00264 * 18 16 15 38 38 H 1.08001 * 128.00468 * 0.02562 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9804 0.6074 -1.2761 6 6 3.6026 -0.8089 -1.3731 7 6 4.2488 -1.5793 -0.2506 8 1 4.9423 -1.0855 0.4141 9 6 3.9548 -2.9144 -0.0721 10 7 3.1108 -3.5159 -0.8817 11 14 4.7564 -3.8695 1.3188 12 1 4.3977 -3.2463 2.6182 13 1 4.2776 -5.2749 1.2945 14 1 6.2315 -3.8466 1.1493 15 6 3.4516 1.3724 -2.4132 16 6 4.0651 2.7740 -2.4144 17 1 3.8866 3.2496 -1.4500 18 8 5.4722 2.6779 -2.6449 19 6 3.4324 3.5983 -3.5058 20 6 2.4489 4.5178 -3.3603 21 6 2.2265 4.9913 -4.6748 22 35 0.9751 6.3042 -5.2097 23 7 3.0556 4.3442 -5.4433 24 8 3.7373 3.5712 -4.8109 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.6886 1.8464 0.8900 29 1 1.6885 1.8464 -0.8900 30 1 3.8491 0.5390 0.8196 31 1 3.9783 2.1728 0.1250 32 1 2.5189 -0.9017 -1.3007 33 1 3.9385 -1.2098 -2.3294 34 1 2.9042 -4.4552 -0.7564 35 1 2.3679 1.4502 -2.3263 36 1 3.7059 0.8637 -3.3430 37 1 5.7053 2.2636 -3.4871 38 1 1.9505 4.8203 -2.4512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000878159762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:54 Heat of formation + Delta-G solvation = -31.408757 kcal Electronic energy + Delta-G solvation = -23414.744270 eV Core-core repulsion = 19728.290118 eV Total energy + Delta-G solvation = -3686.454152 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 348.052 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.27183 -40.10176 -38.37087 -36.78209 -35.55184 -34.52918 -33.50270 -31.90244 -30.61707 -30.27458 -27.67648 -27.00964 -24.81211 -24.66834 -24.20149 -22.18020 -21.07258 -19.23802 -18.89426 -18.37295 -17.64189 -17.43981 -17.12759 -16.66126 -16.15057 -16.02783 -15.73128 -15.39458 -14.84756 -14.68597 -14.57356 -14.05850 -13.55164 -13.32529 -13.13987 -13.09394 -12.92392 -12.74323 -12.64668 -12.52642 -12.36009 -12.26324 -11.87576 -11.67814 -11.66117 -11.40119 -11.09067 -10.92454 -10.55912 -10.52140 -10.24119 -8.70907 -8.03169 -6.07182 -0.07862 0.11570 0.79276 1.45576 1.47862 1.54421 1.78187 2.50249 2.95227 3.08332 3.31621 3.34677 3.43376 3.72826 3.80768 3.98573 4.10166 4.13855 4.22908 4.37420 4.48556 4.55776 4.63346 4.68511 4.76836 4.85034 4.87613 4.89616 5.23093 5.51357 5.75111 5.80221 6.24164 6.42398 6.52488 6.64923 6.79247 6.85991 7.08695 7.58310 9.07816 Molecular weight = 348.05amu Principal moments of inertia in cm(-1) A = 0.021289 B = 0.002700 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.896804 B =10367.303425 C =11020.686238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.020 3.980 4 C 0.055 3.945 5 N -0.527 5.527 6 C 0.198 3.802 7 C -0.499 4.499 8 H 0.055 0.945 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.954 3.046 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.273 1.273 15 C 0.022 3.978 16 C 0.212 3.788 17 H 0.150 0.850 18 O -0.545 6.545 19 C -0.042 4.042 20 C -0.189 4.189 21 C -0.004 4.004 22 Br 0.065 6.935 23 N -0.356 5.356 24 O 0.113 5.887 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.108 0.892 32 H 0.021 0.979 33 H -0.018 1.018 34 H 0.257 0.743 35 H 0.048 0.952 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.410 22.057 -4.538 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C -0.058 4.058 4 C -0.073 4.073 5 N -0.250 5.250 6 C 0.073 3.927 7 C -0.538 4.538 8 H 0.074 0.926 9 C -0.192 4.192 10 N -0.574 5.574 11 Si 0.780 3.220 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.198 1.198 15 C -0.107 4.107 16 C 0.151 3.849 17 H 0.168 0.832 18 O -0.351 6.351 19 C -0.107 4.107 20 C -0.212 4.212 21 C -0.241 4.241 22 Br 0.146 6.854 23 N -0.058 5.058 24 O 0.042 5.958 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.039 0.961 33 H 0.000 1.000 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.241 0.759 38 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -6.020 22.521 -5.541 23.961 hybrid contribution -1.008 -1.270 0.612 1.733 sum -7.028 21.251 -4.929 22.919 Atomic orbital electron populations 1.22762 0.81853 1.02136 1.00254 1.88398 1.19580 1.28035 1.94981 1.23468 0.96183 0.85289 1.00879 1.22352 0.90918 1.00687 0.93375 1.62109 1.58567 1.03343 1.00960 1.19637 0.95834 0.83009 0.94243 1.21307 1.24328 0.94647 1.13534 0.92645 1.25665 0.95993 0.98861 0.98637 1.70076 1.36471 1.11173 1.39679 0.85682 0.78844 0.77332 0.80140 1.19636 1.21533 1.19789 1.22818 0.97948 0.93963 0.95951 1.20540 0.80610 0.91221 0.92531 0.83248 1.86597 1.20204 1.83272 1.44988 1.25808 0.98736 1.00351 0.85818 1.22794 1.00931 0.99007 0.98509 1.25673 1.01809 1.02903 0.93692 1.96811 1.50516 1.46261 1.91826 1.74064 1.06238 1.04662 1.20871 1.84815 1.47111 1.46045 1.17793 0.93748 0.91404 0.92721 0.91557 0.92299 0.91495 0.87447 0.96100 1.00044 0.93447 0.93438 0.91621 0.75939 0.76982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.04 16 2 O -0.39 -15.28 7.58 -148.98 -1.13 -16.41 16 3 C 0.02 0.58 5.69 71.98 0.41 0.99 16 4 C 0.05 1.81 5.37 86.30 0.46 2.27 16 5 N -0.53 -20.21 4.70 -900.79 -4.23 -24.44 16 6 C 0.20 10.06 4.30 85.56 0.37 10.43 16 7 C -0.50 -27.69 8.21 25.60 0.21 -27.48 16 8 H 0.06 3.03 6.99 -2.91 -0.02 3.01 16 9 C 0.01 0.32 5.46 84.65 0.46 0.78 16 10 N -0.93 -56.17 13.29 21.45 0.28 -55.89 16 11 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 12 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 C 0.02 0.66 4.22 86.30 0.36 1.03 16 16 C 0.21 4.75 3.41 29.85 0.10 4.85 16 17 H 0.15 2.76 6.46 -2.39 -0.02 2.74 16 18 O -0.54 -13.61 13.27 -147.96 -1.96 -15.57 16 19 C -0.04 -0.90 6.34 25.03 0.16 -0.74 16 20 C -0.19 -3.48 11.09 22.42 0.25 -3.23 16 21 C 0.00 -0.09 7.84 85.72 0.67 0.58 16 22 Br 0.06 1.13 34.13 -20.37 -0.70 0.43 16 23 N -0.36 -9.24 12.07 -55.02 -0.66 -9.90 16 24 O 0.11 2.80 11.17 72.53 0.81 3.61 16 25 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.48 5.79 -2.38 -0.01 1.47 16 30 H 0.07 2.67 6.33 -2.39 -0.02 2.66 16 31 H 0.11 2.68 6.66 -2.39 -0.02 2.67 16 32 H 0.02 1.16 5.29 -2.38 -0.01 1.15 16 33 H -0.02 -1.05 8.05 -2.39 -0.02 -1.07 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.05 1.40 5.71 -2.39 -0.01 1.38 16 36 H 0.07 2.12 8.01 -2.39 -0.02 2.10 16 37 H 0.39 8.08 9.02 -74.05 -0.67 7.41 16 38 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -69.34 337.26 -0.42 -69.76 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: 0.44 Total: 10.02 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 4.71 Total: -8.47 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -4.61 Total: -90.23 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -2.28 Total: -28.36 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 35 Polarization: 1.13 SS G_CDS: -0.70 Total: 0.43 kcal Total: -69.34 -0.42 -69.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878159762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.351 kcal (2) G-P(sol) polarization free energy of solvation -69.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds