Wall clock time and date at job start Wed Apr 1 2020 06:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00059 * 2 1 4 4 S 1.65602 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.81403 * 108.33140 * 152.46709 * 4 2 1 6 6 O 1.42103 * 108.33217 * 27.52991 * 4 2 1 7 7 N 1.49355 * 108.73185 * 269.99964 * 4 2 1 8 8 S 1.65603 * 119.99989 * 180.02562 * 7 4 2 9 9 O 1.42101 * 106.40164 * 293.53554 * 8 7 4 10 10 O 1.42102 * 106.40318 * 66.45841 * 8 7 4 11 11 O 1.52193 * 107.21637 * 179.97438 * 8 7 4 12 12 C 1.35674 * 114.00339 * 75.00204 * 11 8 7 13 13 C 1.39318 * 119.81291 * 269.71933 * 12 11 8 14 14 C 1.36444 * 120.18229 * 179.75633 * 13 12 11 15 15 C 1.40833 * 119.80928 * 0.51947 * 14 13 12 16 16 C 1.41217 * 120.17491 * 179.71871 * 15 14 13 17 17 H 1.08003 * 119.99661 * 204.56545 * 16 15 14 18 18 C 1.39894 * 120.00339 * 24.56606 * 16 15 14 19 19 N 1.30879 * 119.99532 * 17.92336 * 18 16 15 20 20 Si 1.86790 * 119.99959 * 197.92297 * 18 16 15 21 21 H 1.48503 * 109.47115 * 89.99852 * 20 18 16 22 22 H 1.48506 * 109.47100 * 209.99771 * 20 18 16 23 23 H 1.48497 * 109.47466 * 330.00166 * 20 18 16 24 24 C 1.40826 * 119.64342 * 359.73851 * 15 14 13 25 25 C 1.36438 * 119.81480 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.46724 * 269.99928 * 1 2 3 27 27 H 1.08994 * 109.47277 * 30.00138 * 1 2 3 28 28 H 1.09000 * 109.47256 * 150.00233 * 1 2 3 29 29 H 1.09002 * 109.46851 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00230 * 3 2 1 31 31 H 1.08996 * 109.47281 * 60.00087 * 3 2 1 32 32 H 1.09004 * 109.46625 * 178.89466 * 5 4 2 33 33 H 1.08994 * 109.47040 * 58.89534 * 5 4 2 34 34 H 1.09004 * 109.46792 * 298.89129 * 5 4 2 35 35 H 1.07997 * 119.90741 * 0.02858 * 13 12 11 36 36 H 1.07997 * 120.09117 * 180.25969 * 14 13 12 37 37 H 0.96998 * 119.99654 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.09611 * 179.97438 * 24 15 14 39 39 H 1.08002 * 119.91352 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 6 3.9006 -1.1645 -0.7965 6 8 1.4805 -2.4190 -0.6246 7 7 2.5328 -1.8502 1.4136 8 16 3.3454 -3.2566 1.7366 9 8 2.5134 -4.3145 1.2805 10 8 4.6776 -3.0639 1.2813 11 8 3.4246 -3.3936 3.2502 12 6 2.2572 -3.7660 3.8326 13 6 1.3537 -2.7939 4.2567 14 6 0.1753 -3.1600 4.8387 15 6 -0.1217 -4.5247 5.0203 16 6 -1.3365 -4.9121 5.6272 17 1 -1.4115 -5.8690 6.1225 18 6 -2.4426 -4.0567 5.5870 19 7 -2.4838 -3.0809 4.7158 20 14 -3.8607 -4.3071 6.7767 21 1 -3.6130 -3.5240 8.0140 22 1 -5.1239 -3.8481 6.1449 23 1 -3.9727 -5.7482 7.1172 24 6 0.7995 -5.5007 4.5937 25 6 1.9713 -5.1180 4.0090 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 3.2692 1.0695 -0.0005 30 1 1.9341 1.8403 -0.8900 31 1 1.9342 1.8403 0.8899 32 1 4.4700 -2.0940 -0.7894 33 1 4.4511 -0.3970 -0.2526 34 1 3.7466 -0.8406 -1.8259 35 1 1.5849 -1.7478 4.1203 36 1 -0.5259 -2.4054 5.1631 37 1 -3.2509 -2.4879 4.6876 38 1 0.5794 -6.5493 4.7297 39 1 2.6791 -5.8651 3.6816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881748690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:45 Heat of formation + Delta-G solvation = -71.359436 kcal Electronic energy + Delta-G solvation = -27442.671877 eV Core-core repulsion = 23413.709597 eV Total energy + Delta-G solvation = -4028.962281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.55513 -36.83517 -36.69649 -36.52957 -36.33661 -35.27496 -33.61355 -32.96773 -30.21910 -29.74237 -29.32398 -28.04623 -25.31384 -25.03159 -21.80378 -21.34570 -20.21035 -19.03551 -17.81335 -17.62037 -17.46070 -16.95443 -16.64803 -16.27236 -15.49737 -15.15418 -14.78353 -14.42223 -14.34040 -14.04777 -13.93856 -13.72763 -13.12815 -12.88464 -12.80038 -12.71527 -12.30454 -12.25478 -12.15326 -11.93819 -11.86057 -11.65595 -11.49314 -11.37759 -11.29331 -11.23907 -11.13057 -10.90561 -10.48610 -10.22781 -10.04761 -9.96285 -9.48251 -9.43158 -9.23462 -7.68237 -7.44785 -6.96916 -4.52110 -0.65744 1.31759 2.21003 2.60024 2.98321 3.01308 3.02925 3.03928 3.26160 3.47223 3.73850 3.79479 4.18248 4.43632 4.45980 4.49752 4.91071 4.97922 5.15838 5.22500 5.31640 5.42969 5.45893 5.55409 5.59485 5.76558 6.05359 6.17793 6.23605 6.36933 6.85614 6.89941 7.06034 7.13061 7.45321 7.74330 7.86261 7.88520 8.07682 8.43254 8.66894 8.77415 9.95598 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.004105 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.435772 B = 6819.817325 C = 8181.928169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.958 5.958 3 C 0.080 3.920 4 S 2.562 3.438 5 C -0.656 4.656 6 O -0.935 6.935 7 N -1.516 6.516 8 S 2.737 3.263 9 O -0.977 6.977 10 O -1.012 7.012 11 O -0.631 6.631 12 C -0.089 4.089 13 C -0.070 4.070 14 C -0.163 4.163 15 C 0.121 3.879 16 C -0.437 4.437 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.772 5.772 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.276 1.276 23 H -0.259 1.259 24 C -0.217 4.217 25 C -0.053 4.053 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.135 0.865 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.286 0.714 38 H 0.106 0.894 39 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.988 12.179 -9.696 16.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.794 5.794 3 C -0.065 4.065 4 S 2.657 3.343 5 C -0.814 4.814 6 O -0.912 6.912 7 N -1.539 6.539 8 S 2.750 3.250 9 O -0.967 6.967 10 O -1.002 7.002 11 O -0.588 6.588 12 C -0.135 4.135 13 C -0.091 4.091 14 C -0.183 4.183 15 C 0.117 3.883 16 C -0.466 4.466 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.395 5.395 20 Si 0.740 3.260 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.183 1.183 24 C -0.237 4.237 25 C -0.074 4.074 26 H 0.090 0.910 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.153 0.847 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.097 0.903 38 H 0.124 0.876 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.735 11.493 -9.751 15.799 hybrid contribution -0.002 0.409 0.004 0.409 sum 4.733 11.902 -9.747 16.095 Atomic orbital electron populations 1.21754 0.75796 1.04016 1.03899 1.55844 1.14919 1.17812 1.90863 1.21822 0.95583 0.85369 1.03758 1.06428 0.78890 0.74598 0.74347 1.30755 1.21604 1.14921 1.14090 1.93623 1.65719 1.52668 1.79158 1.76975 1.75153 1.57910 1.43893 1.03625 0.72574 0.72742 0.76092 1.93677 1.68611 1.53735 1.80683 1.93543 1.38907 1.86914 1.80831 1.85584 1.43333 1.86891 1.42964 1.17603 0.85663 0.93416 1.16768 1.20551 0.93417 0.97254 0.97844 1.20933 0.95415 0.96758 1.05239 1.17808 0.91886 0.91528 0.87076 1.19784 0.94607 1.03195 1.28979 0.89528 1.26075 1.00365 0.93818 0.94631 1.69865 1.29845 1.13027 1.26807 0.86169 0.79061 0.80239 0.80522 1.18994 1.20079 1.18319 1.20602 0.96009 0.98379 1.08750 1.20361 0.96810 0.92857 0.97341 0.91012 0.90062 0.89594 0.90743 0.91025 0.90473 0.82910 0.83833 0.84657 0.87207 0.85439 0.90289 0.87578 0.88126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.94 10.74 59.85 0.64 1.58 16 2 N -0.96 -10.12 3.64 -129.21 -0.47 -10.59 16 3 C 0.08 0.48 10.61 59.85 0.63 1.11 16 4 S 2.56 37.99 4.70 -98.05 -0.46 37.53 16 5 C -0.66 -6.34 9.24 101.05 0.93 -5.41 16 6 O -0.93 -17.93 16.33 -39.56 -0.65 -18.58 16 7 N -1.52 -29.24 10.84 60.35 0.65 -28.59 16 8 S 2.74 62.46 5.41 -98.05 -0.53 61.93 16 9 O -0.98 -25.47 15.80 -68.11 -1.08 -26.54 16 10 O -1.01 -21.72 15.92 -66.81 -1.06 -22.79 16 11 O -0.63 -15.29 10.21 -50.85 -0.52 -15.81 16 12 C -0.09 -2.31 4.85 -38.78 -0.19 -2.50 16 13 C -0.07 -1.76 9.77 -39.83 -0.39 -2.15 16 14 C -0.16 -4.27 8.64 -39.25 -0.34 -4.61 16 15 C 0.12 3.22 5.57 -106.81 -0.60 2.63 16 16 C -0.44 -11.12 9.04 -37.83 -0.34 -11.46 16 17 H 0.09 2.08 7.91 -52.48 -0.41 1.66 16 18 C 0.07 1.71 5.13 -17.34 -0.09 1.62 16 19 N -0.77 -18.97 10.96 55.54 0.61 -18.36 16 20 Si 0.92 17.54 29.59 -169.99 -5.03 12.51 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 C -0.22 -5.54 9.74 -39.25 -0.38 -5.93 16 25 C -0.05 -1.35 9.12 -39.83 -0.36 -1.71 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 28 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16 29 H 0.07 0.30 5.82 -51.93 -0.30 0.00 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.15 1.76 6.69 -51.92 -0.35 1.41 16 33 H 0.14 1.00 6.86 -51.93 -0.36 0.64 16 34 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16 35 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16 36 H 0.13 3.29 6.16 -52.49 -0.32 2.96 16 37 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 38 H 0.11 2.46 8.06 -52.48 -0.42 2.03 16 39 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -36.40 350.93 -8.35 -44.75 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.63 Total: 6.07 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -0.48 Total: -26.82 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: 0.79 Total: -57.55 kcal Atomic # 8 Polarization: -80.41 SS G_CDS: -3.31 Total: -83.72 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: 100.45 SS G_CDS: -0.99 Total: 99.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.40 -8.35 -44.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881748690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.607 kcal (2) G-P(sol) polarization free energy of solvation -36.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds