Wall clock time and date at job start Wed Apr 1 2020 06:54:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.46499 * 120.00059 * 2 1
4 4 S 1.65602 * 119.99833 * 180.02562 * 2 1 3
5 5 C 1.81403 * 108.33140 * 152.46709 * 4 2 1
6 6 O 1.42103 * 108.33217 * 27.52991 * 4 2 1
7 7 N 1.49355 * 108.73185 * 269.99964 * 4 2 1
8 8 S 1.65603 * 119.99989 * 180.02562 * 7 4 2
9 9 O 1.42101 * 106.40164 * 293.53554 * 8 7 4
10 10 O 1.42102 * 106.40318 * 66.45841 * 8 7 4
11 11 O 1.52193 * 107.21637 * 179.97438 * 8 7 4
12 12 C 1.35674 * 114.00339 * 75.00204 * 11 8 7
13 13 C 1.39318 * 119.81291 * 269.71933 * 12 11 8
14 14 C 1.36444 * 120.18229 * 179.75633 * 13 12 11
15 15 C 1.40833 * 119.80928 * 0.51947 * 14 13 12
16 16 C 1.41217 * 120.17491 * 179.71871 * 15 14 13
17 17 H 1.08003 * 119.99661 * 204.56545 * 16 15 14
18 18 C 1.39894 * 120.00339 * 24.56606 * 16 15 14
19 19 N 1.30879 * 119.99532 * 17.92336 * 18 16 15
20 20 Si 1.86790 * 119.99959 * 197.92297 * 18 16 15
21 21 H 1.48503 * 109.47115 * 89.99852 * 20 18 16
22 22 H 1.48506 * 109.47100 * 209.99771 * 20 18 16
23 23 H 1.48497 * 109.47466 * 330.00166 * 20 18 16
24 24 C 1.40826 * 119.64342 * 359.73851 * 15 14 13
25 25 C 1.36438 * 119.81480 * 0.02562 * 24 15 14
26 26 H 1.09001 * 109.46724 * 269.99928 * 1 2 3
27 27 H 1.08994 * 109.47277 * 30.00138 * 1 2 3
28 28 H 1.09000 * 109.47256 * 150.00233 * 1 2 3
29 29 H 1.09002 * 109.46851 * 180.02562 * 3 2 1
30 30 H 1.09002 * 109.46902 * 300.00230 * 3 2 1
31 31 H 1.08996 * 109.47281 * 60.00087 * 3 2 1
32 32 H 1.09004 * 109.46625 * 178.89466 * 5 4 2
33 33 H 1.08994 * 109.47040 * 58.89534 * 5 4 2
34 34 H 1.09004 * 109.46792 * 298.89129 * 5 4 2
35 35 H 1.07997 * 119.90741 * 0.02858 * 13 12 11
36 36 H 1.07997 * 120.09117 * 180.25969 * 14 13 12
37 37 H 0.96998 * 119.99654 * 179.97438 * 19 18 16
38 38 H 1.08004 * 120.09611 * 179.97438 * 24 15 14
39 39 H 1.08002 * 119.91352 * 179.97438 * 25 24 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 16 2.2930 -1.4342 -0.0006
5 6 3.9006 -1.1645 -0.7965
6 8 1.4805 -2.4190 -0.6246
7 7 2.5328 -1.8502 1.4136
8 16 3.3454 -3.2566 1.7366
9 8 2.5134 -4.3145 1.2805
10 8 4.6776 -3.0639 1.2813
11 8 3.4246 -3.3936 3.2502
12 6 2.2572 -3.7660 3.8326
13 6 1.3537 -2.7939 4.2567
14 6 0.1753 -3.1600 4.8387
15 6 -0.1217 -4.5247 5.0203
16 6 -1.3365 -4.9121 5.6272
17 1 -1.4115 -5.8690 6.1225
18 6 -2.4426 -4.0567 5.5870
19 7 -2.4838 -3.0809 4.7158
20 14 -3.8607 -4.3071 6.7767
21 1 -3.6130 -3.5240 8.0140
22 1 -5.1239 -3.8481 6.1449
23 1 -3.9727 -5.7482 7.1172
24 6 0.7995 -5.5007 4.5937
25 6 1.9713 -5.1180 4.0090
26 1 -0.3633 0.0000 1.0277
27 1 -0.3633 0.8899 -0.5138
28 1 -0.3634 -0.8900 -0.5138
29 1 3.2692 1.0695 -0.0005
30 1 1.9341 1.8403 -0.8900
31 1 1.9342 1.8403 0.8899
32 1 4.4700 -2.0940 -0.7894
33 1 4.4511 -0.3970 -0.2526
34 1 3.7466 -0.8406 -1.8259
35 1 1.5849 -1.7478 4.1203
36 1 -0.5259 -2.4054 5.1631
37 1 -3.2509 -2.4879 4.6876
38 1 0.5794 -6.5493 4.7297
39 1 2.6791 -5.8651 3.6816
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000881748690.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:54:45
Heat of formation + Delta-G solvation = -71.359436 kcal
Electronic energy + Delta-G solvation = -27442.671877 eV
Core-core repulsion = 23413.709597 eV
Total energy + Delta-G solvation = -4028.962281 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 348.069 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-39.55513 -36.83517 -36.69649 -36.52957 -36.33661 -35.27496 -33.61355 -32.96773
-30.21910 -29.74237 -29.32398 -28.04623 -25.31384 -25.03159 -21.80378 -21.34570
-20.21035 -19.03551 -17.81335 -17.62037 -17.46070 -16.95443 -16.64803 -16.27236
-15.49737 -15.15418 -14.78353 -14.42223 -14.34040 -14.04777 -13.93856 -13.72763
-13.12815 -12.88464 -12.80038 -12.71527 -12.30454 -12.25478 -12.15326 -11.93819
-11.86057 -11.65595 -11.49314 -11.37759 -11.29331 -11.23907 -11.13057 -10.90561
-10.48610 -10.22781 -10.04761 -9.96285 -9.48251 -9.43158 -9.23462 -7.68237
-7.44785 -6.96916 -4.52110 -0.65744 1.31759 2.21003 2.60024 2.98321
3.01308 3.02925 3.03928 3.26160 3.47223 3.73850 3.79479 4.18248
4.43632 4.45980 4.49752 4.91071 4.97922 5.15838 5.22500 5.31640
5.42969 5.45893 5.55409 5.59485 5.76558 6.05359 6.17793 6.23605
6.36933 6.85614 6.89941 7.06034 7.13061 7.45321 7.74330 7.86261
7.88520 8.07682 8.43254 8.66894 8.77415 9.95598
Molecular weight = 348.07amu
Principal moments of inertia in cm(-1)
A = 0.014236 B = 0.004105 C = 0.003421
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1966.435772 B = 6819.817325 C = 8181.928169
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.958 5.958
3 C 0.080 3.920
4 S 2.562 3.438
5 C -0.656 4.656
6 O -0.935 6.935
7 N -1.516 6.516
8 S 2.737 3.263
9 O -0.977 6.977
10 O -1.012 7.012
11 O -0.631 6.631
12 C -0.089 4.089
13 C -0.070 4.070
14 C -0.163 4.163
15 C 0.121 3.879
16 C -0.437 4.437
17 H 0.087 0.913
18 C 0.072 3.928
19 N -0.772 5.772
20 Si 0.916 3.084
21 H -0.265 1.265
22 H -0.276 1.276
23 H -0.259 1.259
24 C -0.217 4.217
25 C -0.053 4.053
26 H 0.071 0.929
27 H 0.081 0.919
28 H 0.085 0.915
29 H 0.074 0.926
30 H 0.071 0.929
31 H 0.077 0.923
32 H 0.153 0.847
33 H 0.143 0.857
34 H 0.135 0.865
35 H 0.110 0.890
36 H 0.128 0.872
37 H 0.286 0.714
38 H 0.106 0.894
39 H 0.101 0.899
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.988 12.179 -9.696 16.347
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 N -0.794 5.794
3 C -0.065 4.065
4 S 2.657 3.343
5 C -0.814 4.814
6 O -0.912 6.912
7 N -1.539 6.539
8 S 2.750 3.250
9 O -0.967 6.967
10 O -1.002 7.002
11 O -0.588 6.588
12 C -0.135 4.135
13 C -0.091 4.091
14 C -0.183 4.183
15 C 0.117 3.883
16 C -0.466 4.466
17 H 0.105 0.895
18 C -0.149 4.149
19 N -0.395 5.395
20 Si 0.740 3.260
21 H -0.190 1.190
22 H -0.201 1.201
23 H -0.183 1.183
24 C -0.237 4.237
25 C -0.074 4.074
26 H 0.090 0.910
27 H 0.099 0.901
28 H 0.104 0.896
29 H 0.093 0.907
30 H 0.090 0.910
31 H 0.095 0.905
32 H 0.171 0.829
33 H 0.162 0.838
34 H 0.153 0.847
35 H 0.128 0.872
36 H 0.146 0.854
37 H 0.097 0.903
38 H 0.124 0.876
39 H 0.119 0.881
Dipole moment (debyes) X Y Z Total
from point charges 4.735 11.493 -9.751 15.799
hybrid contribution -0.002 0.409 0.004 0.409
sum 4.733 11.902 -9.747 16.095
Atomic orbital electron populations
1.21754 0.75796 1.04016 1.03899 1.55844 1.14919 1.17812 1.90863
1.21822 0.95583 0.85369 1.03758 1.06428 0.78890 0.74598 0.74347
1.30755 1.21604 1.14921 1.14090 1.93623 1.65719 1.52668 1.79158
1.76975 1.75153 1.57910 1.43893 1.03625 0.72574 0.72742 0.76092
1.93677 1.68611 1.53735 1.80683 1.93543 1.38907 1.86914 1.80831
1.85584 1.43333 1.86891 1.42964 1.17603 0.85663 0.93416 1.16768
1.20551 0.93417 0.97254 0.97844 1.20933 0.95415 0.96758 1.05239
1.17808 0.91886 0.91528 0.87076 1.19784 0.94607 1.03195 1.28979
0.89528 1.26075 1.00365 0.93818 0.94631 1.69865 1.29845 1.13027
1.26807 0.86169 0.79061 0.80239 0.80522 1.18994 1.20079 1.18319
1.20602 0.96009 0.98379 1.08750 1.20361 0.96810 0.92857 0.97341
0.91012 0.90062 0.89594 0.90743 0.91025 0.90473 0.82910 0.83833
0.84657 0.87207 0.85439 0.90289 0.87578 0.88126
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 22.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.94 10.74 59.85 0.64 1.58 16
2 N -0.96 -10.12 3.64 -129.21 -0.47 -10.59 16
3 C 0.08 0.48 10.61 59.85 0.63 1.11 16
4 S 2.56 37.99 4.70 -98.05 -0.46 37.53 16
5 C -0.66 -6.34 9.24 101.05 0.93 -5.41 16
6 O -0.93 -17.93 16.33 -39.56 -0.65 -18.58 16
7 N -1.52 -29.24 10.84 60.35 0.65 -28.59 16
8 S 2.74 62.46 5.41 -98.05 -0.53 61.93 16
9 O -0.98 -25.47 15.80 -68.11 -1.08 -26.54 16
10 O -1.01 -21.72 15.92 -66.81 -1.06 -22.79 16
11 O -0.63 -15.29 10.21 -50.85 -0.52 -15.81 16
12 C -0.09 -2.31 4.85 -38.78 -0.19 -2.50 16
13 C -0.07 -1.76 9.77 -39.83 -0.39 -2.15 16
14 C -0.16 -4.27 8.64 -39.25 -0.34 -4.61 16
15 C 0.12 3.22 5.57 -106.81 -0.60 2.63 16
16 C -0.44 -11.12 9.04 -37.83 -0.34 -11.46 16
17 H 0.09 2.08 7.91 -52.48 -0.41 1.66 16
18 C 0.07 1.71 5.13 -17.34 -0.09 1.62 16
19 N -0.77 -18.97 10.96 55.54 0.61 -18.36 16
20 Si 0.92 17.54 29.59 -169.99 -5.03 12.51 16
21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16
22 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16
23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16
24 C -0.22 -5.54 9.74 -39.25 -0.38 -5.93 16
25 C -0.05 -1.35 9.12 -39.83 -0.36 -1.71 16
26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
27 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16
28 H 0.09 1.02 7.18 -51.93 -0.37 0.65 16
29 H 0.07 0.30 5.82 -51.93 -0.30 0.00 16
30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16
31 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16
32 H 0.15 1.76 6.69 -51.92 -0.35 1.41 16
33 H 0.14 1.00 6.86 -51.93 -0.36 0.64 16
34 H 0.13 0.73 8.14 -51.92 -0.42 0.31 16
35 H 0.11 2.51 8.06 -52.49 -0.42 2.09 16
36 H 0.13 3.29 6.16 -52.49 -0.32 2.96 16
37 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16
38 H 0.11 2.46 8.06 -52.48 -0.42 2.03 16
39 H 0.10 2.34 8.06 -52.49 -0.42 1.91 16
LS Contribution 350.93 15.07 5.29 5.29
Total: -1.00 -36.40 350.93 -8.35 -44.75
By element:
Atomic # 1 Polarization: 10.70 SS G_CDS: -4.63 Total: 6.07 kcal
Atomic # 6 Polarization: -26.34 SS G_CDS: -0.48 Total: -26.82 kcal
Atomic # 7 Polarization: -58.34 SS G_CDS: 0.79 Total: -57.55 kcal
Atomic # 8 Polarization: -80.41 SS G_CDS: -3.31 Total: -83.72 kcal
Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal
Atomic # 16 Polarization: 100.45 SS G_CDS: -0.99 Total: 99.46 kcal
Total LS contribution 5.29 Total: 5.29 kcal
Total: -36.40 -8.35 -44.75 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000881748690.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -26.607 kcal
(2) G-P(sol) polarization free energy of solvation -36.399 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.006 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.752 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds