Wall clock time and date at job start Wed Apr 1 2020 06:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00059 * 2 1 4 4 S 1.65602 * 119.99833 * 180.02562 * 2 1 3 5 5 C 1.81403 * 108.33140 * 152.46709 * 4 2 1 6 6 O 1.42103 * 108.33217 * 27.52991 * 4 2 1 7 7 N 1.49355 * 108.73185 * 269.99964 * 4 2 1 8 8 S 1.65603 * 119.99989 * 180.02562 * 7 4 2 9 9 O 1.42101 * 106.40164 * 293.53554 * 8 7 4 10 10 O 1.42102 * 106.40318 * 66.45841 * 8 7 4 11 11 O 1.52193 * 107.21637 * 179.97438 * 8 7 4 12 12 C 1.35674 * 114.00339 * 75.00204 * 11 8 7 13 13 C 1.39318 * 119.81291 * 269.71933 * 12 11 8 14 14 C 1.36444 * 120.18229 * 179.75633 * 13 12 11 15 15 C 1.40833 * 119.80928 * 0.51947 * 14 13 12 16 16 C 1.41217 * 120.17491 * 179.71871 * 15 14 13 17 17 H 1.08003 * 119.99661 * 204.56545 * 16 15 14 18 18 C 1.39894 * 120.00339 * 24.56606 * 16 15 14 19 19 N 1.30879 * 119.99532 * 17.92336 * 18 16 15 20 20 Si 1.86790 * 119.99959 * 197.92297 * 18 16 15 21 21 H 1.48503 * 109.47115 * 89.99852 * 20 18 16 22 22 H 1.48506 * 109.47100 * 209.99771 * 20 18 16 23 23 H 1.48497 * 109.47466 * 330.00166 * 20 18 16 24 24 C 1.40826 * 119.64342 * 359.73851 * 15 14 13 25 25 C 1.36438 * 119.81480 * 0.02562 * 24 15 14 26 26 H 1.09001 * 109.46724 * 269.99928 * 1 2 3 27 27 H 1.08994 * 109.47277 * 30.00138 * 1 2 3 28 28 H 1.09000 * 109.47256 * 150.00233 * 1 2 3 29 29 H 1.09002 * 109.46851 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46902 * 300.00230 * 3 2 1 31 31 H 1.08996 * 109.47281 * 60.00087 * 3 2 1 32 32 H 1.09004 * 109.46625 * 178.89466 * 5 4 2 33 33 H 1.08994 * 109.47040 * 58.89534 * 5 4 2 34 34 H 1.09004 * 109.46792 * 298.89129 * 5 4 2 35 35 H 1.07997 * 119.90741 * 0.02858 * 13 12 11 36 36 H 1.07997 * 120.09117 * 180.25969 * 14 13 12 37 37 H 0.96998 * 119.99654 * 179.97438 * 19 18 16 38 38 H 1.08004 * 120.09611 * 179.97438 * 24 15 14 39 39 H 1.08002 * 119.91352 * 179.97438 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 16 2.2930 -1.4342 -0.0006 5 6 3.9006 -1.1645 -0.7965 6 8 1.4805 -2.4190 -0.6246 7 7 2.5328 -1.8502 1.4136 8 16 3.3454 -3.2566 1.7366 9 8 2.5134 -4.3145 1.2805 10 8 4.6776 -3.0639 1.2813 11 8 3.4246 -3.3936 3.2502 12 6 2.2572 -3.7660 3.8326 13 6 1.3537 -2.7939 4.2567 14 6 0.1753 -3.1600 4.8387 15 6 -0.1217 -4.5247 5.0203 16 6 -1.3365 -4.9121 5.6272 17 1 -1.4115 -5.8690 6.1225 18 6 -2.4426 -4.0567 5.5870 19 7 -2.4838 -3.0809 4.7158 20 14 -3.8607 -4.3071 6.7767 21 1 -3.6130 -3.5240 8.0140 22 1 -5.1239 -3.8481 6.1449 23 1 -3.9727 -5.7482 7.1172 24 6 0.7995 -5.5007 4.5937 25 6 1.9713 -5.1180 4.0090 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 3.2692 1.0695 -0.0005 30 1 1.9341 1.8403 -0.8900 31 1 1.9342 1.8403 0.8899 32 1 4.4700 -2.0940 -0.7894 33 1 4.4511 -0.3970 -0.2526 34 1 3.7466 -0.8406 -1.8259 35 1 1.5849 -1.7478 4.1203 36 1 -0.5259 -2.4054 5.1631 37 1 -3.2509 -2.4879 4.6876 38 1 0.5794 -6.5493 4.7297 39 1 2.6791 -5.8651 3.6816 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881748690.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:44 Heat of formation + Delta-G solvation = -100.115515 kcal Electronic energy + Delta-G solvation = -27443.918835 eV Core-core repulsion = 23413.709597 eV Total energy + Delta-G solvation = -4030.209238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.44185 -38.72839 -38.33584 -37.79684 -37.35887 -37.02724 -35.49208 -34.34180 -31.71622 -31.28943 -31.05610 -28.72943 -27.24538 -25.80789 -23.70677 -23.27831 -21.80953 -20.59353 -19.42458 -19.23373 -18.91675 -18.55299 -18.12651 -17.39199 -17.27556 -16.41174 -16.25586 -15.83941 -15.79293 -15.45733 -15.09697 -14.71318 -14.62322 -14.19711 -14.06582 -13.98161 -13.91374 -13.76287 -13.64012 -13.40813 -13.25306 -13.24466 -13.07883 -12.96390 -12.81567 -12.73795 -12.62111 -12.56707 -12.31637 -11.77384 -11.63148 -11.36102 -11.32150 -11.09250 -10.24906 -9.68244 -9.43407 -8.79197 -6.48432 -1.71147 -0.33088 0.69529 1.01499 1.22653 1.41209 1.49313 1.56545 1.63184 1.92765 2.18460 2.57188 2.67187 3.43252 3.48140 3.57513 3.60729 3.78915 3.91950 4.22136 4.28851 4.33317 4.46218 4.50721 4.60243 4.72031 4.84731 4.90891 4.91708 4.98566 5.02323 5.09301 5.20247 5.33506 5.49650 5.76375 5.86501 5.92001 6.12137 6.47993 6.72854 6.80865 8.17540 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.014236 B = 0.004105 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.435772 B = 6819.817325 C = 8181.928169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.942 5.942 3 C 0.063 3.937 4 S 2.530 3.470 5 C -0.619 4.619 6 O -0.993 6.993 7 N -1.550 6.550 8 S 2.752 3.248 9 O -1.021 7.021 10 O -1.005 7.005 11 O -0.642 6.642 12 C -0.106 4.106 13 C -0.072 4.072 14 C -0.181 4.181 15 C 0.093 3.907 16 C -0.463 4.463 17 H 0.094 0.906 18 C 0.033 3.967 19 N -0.802 5.802 20 Si 0.996 3.004 21 H -0.257 1.257 22 H -0.265 1.265 23 H -0.255 1.255 24 C -0.232 4.232 25 C -0.069 4.069 26 H 0.050 0.950 27 H 0.129 0.871 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.079 0.921 32 H 0.142 0.858 33 H 0.183 0.817 34 H 0.193 0.807 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.298 0.702 38 H 0.122 0.878 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 14.842 -10.852 19.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.781 5.781 3 C -0.081 4.081 4 S 2.633 3.367 5 C -0.781 4.781 6 O -0.971 6.971 7 N -1.575 6.575 8 S 2.762 3.238 9 O -1.011 7.011 10 O -0.995 6.995 11 O -0.598 6.598 12 C -0.150 4.150 13 C -0.092 4.092 14 C -0.201 4.201 15 C 0.089 3.911 16 C -0.491 4.491 17 H 0.112 0.888 18 C -0.186 4.186 19 N -0.425 5.425 20 Si 0.815 3.185 21 H -0.181 1.181 22 H -0.190 1.190 23 H -0.179 1.179 24 C -0.252 4.252 25 C -0.089 4.089 26 H 0.069 0.931 27 H 0.148 0.852 28 H 0.082 0.918 29 H 0.117 0.883 30 H 0.129 0.871 31 H 0.098 0.902 32 H 0.160 0.840 33 H 0.201 0.799 34 H 0.210 0.790 35 H 0.143 0.857 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.140 0.860 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.949 14.134 -10.856 18.496 hybrid contribution 0.038 -0.165 0.124 0.210 sum 4.987 13.969 -10.732 18.308 Atomic orbital electron populations 1.21874 0.76002 1.05224 1.03041 1.55677 1.14741 1.17461 1.90206 1.22354 0.96655 0.83206 1.05861 1.07099 0.80755 0.75609 0.73269 1.30500 1.14890 1.15921 1.16769 1.93572 1.68225 1.56068 1.79262 1.76586 1.76340 1.56750 1.47821 1.02713 0.72729 0.73159 0.75170 1.93627 1.69711 1.56699 1.81069 1.93535 1.38589 1.87139 1.80247 1.85463 1.43101 1.87153 1.44079 1.17727 0.86058 0.93694 1.17526 1.20696 0.93146 0.98030 0.97367 1.20968 0.95904 0.96792 1.06434 1.18184 0.92983 0.92014 0.87927 1.20110 0.95033 1.04320 1.29638 0.88795 1.27037 1.02788 0.92919 0.95841 1.69895 1.31270 1.13580 1.27761 0.84987 0.75297 0.80340 0.77843 1.18134 1.18959 1.17853 1.20834 0.96174 0.99153 1.09068 1.20636 0.97347 0.93455 0.97481 0.93072 0.85243 0.91848 0.88287 0.87145 0.90244 0.84020 0.79926 0.78980 0.85723 0.85734 0.89073 0.86043 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.68 10.74 127.77 1.37 3.05 16 2 N -0.94 -17.86 3.64 -562.70 -2.05 -19.91 16 3 C 0.06 0.47 10.61 127.77 1.36 1.82 16 4 S 2.53 72.45 4.70 -37.15 -0.17 72.28 16 5 C -0.62 -9.13 9.24 113.37 1.05 -8.08 16 6 O -0.99 -39.40 16.33 -144.84 -2.37 -41.77 16 7 N -1.55 -60.39 10.84 37.02 0.40 -59.99 16 8 S 2.75 128.37 5.41 -37.15 -0.20 128.17 16 9 O -1.02 -55.77 15.80 -117.55 -1.86 -57.62 16 10 O -1.01 -42.70 15.92 -118.78 -1.89 -44.59 16 11 O -0.64 -32.11 10.21 -59.19 -0.60 -32.71 16 12 C -0.11 -5.72 4.85 22.79 0.11 -5.61 16 13 C -0.07 -3.79 9.77 22.11 0.22 -3.58 16 14 C -0.18 -9.91 8.64 22.49 0.19 -9.72 16 15 C 0.09 5.16 5.57 -21.28 -0.12 5.04 16 16 C -0.46 -24.20 9.04 23.40 0.21 -23.98 16 17 H 0.09 4.60 7.91 -2.91 -0.02 4.57 16 18 C 0.03 1.56 5.13 85.24 0.44 2.00 16 19 N -0.80 -40.11 10.96 21.82 0.24 -39.87 16 20 Si 1.00 35.52 29.59 68.60 2.03 37.55 16 21 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 22 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16 23 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 24 C -0.23 -12.42 9.74 22.48 0.22 -12.20 16 25 C -0.07 -3.67 9.12 22.11 0.20 -3.47 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.13 1.33 8.07 -2.39 -0.02 1.31 16 28 H 0.06 1.57 7.18 -2.39 -0.02 1.55 16 29 H 0.10 0.25 5.82 -2.39 -0.01 0.23 16 30 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.14 2.77 6.69 -2.39 -0.02 2.75 16 33 H 0.18 1.38 6.86 -2.39 -0.02 1.37 16 34 H 0.19 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.12 5.96 8.06 -2.91 -0.02 5.93 16 36 H 0.12 6.73 6.16 -2.91 -0.02 6.71 16 37 H 0.30 13.12 8.30 -92.71 -0.77 12.35 16 38 H 0.12 5.87 8.06 -2.91 -0.02 5.84 16 39 H 0.11 5.58 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -86.74 350.93 -0.14 -86.89 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 1.08 Total: 26.30 kcal Atomic # 6 Polarization: -59.97 SS G_CDS: 5.25 Total: -54.72 kcal Atomic # 7 Polarization: -118.36 SS G_CDS: -1.41 Total: -119.77 kcal Atomic # 8 Polarization: -169.98 SS G_CDS: -6.72 Total: -176.70 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 200.82 SS G_CDS: -0.38 Total: 200.45 kcal Total: -86.74 -0.14 -86.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881748690.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.229 kcal (2) G-P(sol) polarization free energy of solvation -86.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds