Wall clock time and date at job start Wed Apr 1 2020 06:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00821 * 2 1 4 4 S 1.65607 * 119.99729 * 180.02562 * 2 1 3 5 5 C 1.81405 * 108.32933 * 267.53031 * 4 2 1 6 6 O 1.42098 * 108.33584 * 32.46323 * 4 2 1 7 7 N 1.49352 * 108.73630 * 149.99975 * 4 2 1 8 8 S 1.65595 * 120.00217 * 179.97438 * 7 4 2 9 9 O 1.42100 * 106.39996 * 66.45917 * 8 7 4 10 10 O 1.42098 * 106.40488 * 293.54002 * 8 7 4 11 11 O 1.52204 * 107.21796 * 179.97438 * 8 7 4 12 12 C 1.35899 * 113.99959 * 74.99852 * 11 8 7 13 13 C 1.39158 * 119.93464 * 270.01944 * 12 11 8 14 14 C 1.38518 * 120.44462 * 179.97438 * 13 12 11 15 15 C 1.37670 * 120.30244 * 359.97438 * 14 13 12 16 16 C 1.40727 * 119.85943 * 0.03908 * 15 14 13 17 17 C 1.41405 * 120.21888 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99872 * 24.33418 * 17 16 15 19 19 C 1.39932 * 119.99801 * 204.32761 * 17 16 15 20 20 N 1.30821 * 120.00321 * 17.83450 * 19 17 16 21 21 Si 1.86801 * 119.99814 * 197.83280 * 19 17 16 22 22 H 1.48505 * 109.47171 * 90.00417 * 21 19 17 23 23 H 1.48499 * 109.47260 * 209.99968 * 21 19 17 24 24 H 1.48500 * 109.47303 * 330.00598 * 21 19 17 25 25 C 1.38096 * 119.92740 * 90.00143 * 12 11 8 26 26 H 1.08996 * 109.47799 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47168 * 300.00065 * 1 2 3 28 28 H 1.09002 * 109.47297 * 59.99574 * 1 2 3 29 29 H 1.08995 * 109.47248 * 270.00682 * 3 2 1 30 30 H 1.09013 * 109.46566 * 29.99966 * 3 2 1 31 31 H 1.08994 * 109.47578 * 149.99690 * 3 2 1 32 32 H 1.08997 * 109.47060 * 301.10507 * 5 4 2 33 33 H 1.09000 * 109.47158 * 61.10491 * 5 4 2 34 34 H 1.09002 * 109.47157 * 181.10837 * 5 4 2 35 35 H 1.07996 * 119.77985 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.84847 * 180.02562 * 14 13 12 37 37 H 1.08003 * 120.06729 * 179.97438 * 15 14 13 38 38 H 0.96995 * 120.00573 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.15712 * 359.74955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 16 2.2929 -1.4342 -0.0006 5 6 2.6423 -1.8920 1.7196 6 8 1.5307 -2.3900 -0.7251 7 7 3.5935 -1.2370 -0.7077 8 16 4.6484 -2.5032 -0.8695 9 8 4.0157 -3.4458 -1.7241 10 8 5.0978 -2.8210 0.4405 11 8 5.8624 -1.9843 -1.6269 12 6 6.6878 -1.2045 -0.8803 13 6 6.4853 0.1713 -0.8293 14 6 7.3199 0.9760 -0.0713 15 6 8.3598 0.4223 0.6409 16 6 8.5765 -0.9676 0.5982 17 6 9.6420 -1.5444 1.3272 18 1 10.0384 -1.0388 2.1953 19 6 10.1827 -2.7705 0.9239 20 7 9.9657 -3.2143 -0.2874 21 14 11.2142 -3.7734 2.1153 22 1 10.3341 -4.6950 2.8778 23 1 12.2187 -4.5622 1.3576 24 1 11.9099 -2.8606 3.0576 25 6 7.7258 -1.7792 -0.1736 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.3792 1.5833 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1382 0.5138 32 1 3.2279 -1.1042 2.1934 33 1 1.7040 -2.0215 2.2589 34 1 3.2051 -2.8253 1.7401 35 1 5.6713 0.6145 -1.3837 36 1 7.1536 2.0426 -0.0383 37 1 9.0085 1.0533 1.2303 38 1 10.3408 -4.0639 -0.5672 39 1 7.8807 -2.8474 -0.2095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882128224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:49 Heat of formation + Delta-G solvation = -72.094387 kcal Electronic energy + Delta-G solvation = -27587.190205 eV Core-core repulsion = 23558.196054 eV Total energy + Delta-G solvation = -4028.994151 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.76366 -36.84429 -36.78332 -36.62198 -36.50232 -35.45720 -33.68659 -33.22604 -29.79566 -29.64180 -28.92736 -28.49265 -25.44805 -25.11662 -22.21429 -21.35459 -20.35073 -19.05742 -18.01672 -17.65810 -17.58358 -16.76297 -16.52479 -16.07544 -15.52622 -15.23485 -14.80439 -14.69952 -14.47020 -14.14693 -13.97535 -13.65503 -13.12094 -13.02357 -12.86570 -12.80125 -12.62530 -12.49492 -12.18505 -12.03480 -11.73640 -11.64697 -11.58576 -11.50231 -11.48906 -11.16094 -11.07219 -10.73213 -10.45230 -10.41330 -10.19690 -10.00672 -9.64180 -9.56428 -9.25826 -7.60527 -7.58091 -6.86015 -4.48135 -0.72085 1.18203 2.12801 2.56978 2.75779 3.02105 3.05347 3.08746 3.14492 3.25507 3.76185 3.88098 4.18313 4.45852 4.51376 4.66652 4.82193 4.92289 5.02998 5.15500 5.25822 5.29221 5.48166 5.48776 5.56512 5.64947 5.98866 6.01359 6.24970 6.40510 6.64211 6.90192 6.94573 7.13523 7.41744 7.63327 7.73818 7.86860 8.09480 8.43101 8.73727 8.74895 10.08991 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003860 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.346473 B = 7252.929910 C = 7761.607450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.964 5.964 3 C 0.095 3.905 4 S 2.572 3.428 5 C -0.657 4.657 6 O -0.940 6.940 7 N -1.524 6.524 8 S 2.772 3.228 9 O -0.971 6.971 10 O -0.993 6.993 11 O -0.648 6.648 12 C 0.074 3.926 13 C -0.233 4.233 14 C -0.083 4.083 15 C -0.216 4.216 16 C 0.115 3.885 17 C -0.454 4.454 18 H 0.085 0.915 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.913 3.087 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.130 4.130 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.286 0.714 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.304 7.543 5.639 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.799 5.799 3 C -0.049 4.049 4 S 2.668 3.332 5 C -0.814 4.814 6 O -0.917 6.917 7 N -1.548 6.548 8 S 2.780 3.220 9 O -0.961 6.961 10 O -0.984 6.984 11 O -0.605 6.605 12 C 0.033 3.967 13 C -0.254 4.254 14 C -0.102 4.102 15 C -0.237 4.237 16 C 0.112 3.888 17 C -0.483 4.483 18 H 0.104 0.896 19 C -0.146 4.146 20 N -0.412 5.412 21 Si 0.737 3.263 22 H -0.190 1.190 23 H -0.202 1.202 24 H -0.184 1.184 25 C -0.153 4.153 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.166 0.834 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.233 6.551 4.524 18.080 hybrid contribution 0.433 -0.519 0.883 1.112 sum -15.799 6.032 5.407 17.755 Atomic orbital electron populations 1.21747 0.76971 1.03853 1.03425 1.55956 1.14088 1.19071 1.90770 1.21679 0.96266 0.83232 1.03769 1.06056 0.75152 0.73493 0.78535 1.30803 1.12435 1.14930 1.23279 1.93621 1.73171 1.58712 1.66233 1.76614 1.43279 1.67401 1.67540 1.02093 0.74450 0.71726 0.73729 1.93657 1.75022 1.59803 1.67620 1.93677 1.79308 1.83608 1.41765 1.85572 1.47610 1.69950 1.57412 1.18114 0.93201 0.88597 0.96759 1.20435 1.05208 0.91200 1.08603 1.20369 0.95364 0.97332 0.97115 1.21110 1.01353 0.94659 1.06562 1.17394 0.91025 0.90457 0.89928 1.19603 1.13931 1.03392 1.11382 0.89646 1.26006 0.96074 0.97505 0.95058 1.69784 1.35901 1.19178 1.16327 0.86231 0.79398 0.79885 0.80784 1.19011 1.20159 1.18434 1.21494 0.93433 1.01157 0.99228 0.89997 0.91041 0.90557 0.91164 0.90603 0.89778 0.83444 0.85047 0.82935 0.86985 0.88053 0.88084 0.90319 0.85125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.51 10.68 59.84 0.64 1.15 16 2 N -0.96 -8.75 3.63 -129.21 -0.47 -9.22 16 3 C 0.10 0.73 10.39 59.85 0.62 1.35 16 4 S 2.57 35.14 4.49 -98.05 -0.44 34.70 16 5 C -0.66 -6.75 10.27 101.05 1.04 -5.71 16 6 O -0.94 -16.15 16.52 -39.58 -0.65 -16.80 16 7 N -1.52 -27.42 10.27 60.35 0.62 -26.80 16 8 S 2.77 63.03 5.41 -98.05 -0.53 62.50 16 9 O -0.97 -24.22 17.48 -68.11 -1.19 -25.41 16 10 O -0.99 -22.77 14.24 -66.81 -0.95 -23.72 16 11 O -0.65 -16.19 10.22 -51.55 -0.53 -16.72 16 12 C 0.07 1.88 4.83 -39.29 -0.19 1.69 16 13 C -0.23 -5.21 9.84 -39.14 -0.38 -5.59 16 14 C -0.08 -1.75 10.02 -39.69 -0.40 -2.15 16 15 C -0.22 -5.03 9.79 -38.85 -0.38 -5.41 16 16 C 0.11 3.04 5.57 -106.84 -0.60 2.44 16 17 C -0.45 -11.80 9.05 -37.74 -0.34 -12.14 16 18 H 0.09 2.07 7.91 -52.49 -0.41 1.66 16 19 C 0.07 1.82 5.14 -17.35 -0.09 1.73 16 20 N -0.79 -20.73 10.95 55.55 0.61 -20.12 16 21 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 22 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 C -0.13 -3.57 7.82 -38.72 -0.30 -3.88 16 26 H 0.08 0.48 7.26 -51.93 -0.38 0.11 16 27 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.34 8.07 -51.92 -0.42 -0.08 16 31 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 32 H 0.15 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.13 0.77 8.14 -51.92 -0.42 0.35 16 34 H 0.15 1.88 6.69 -51.92 -0.35 1.53 16 35 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.10 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.29 6.83 8.30 -40.82 -0.34 6.49 16 39 H 0.13 3.77 6.16 -52.49 -0.32 3.45 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -36.24 354.78 -8.41 -44.66 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.81 Total: 4.53 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -0.38 Total: -26.51 kcal Atomic # 7 Polarization: -56.90 SS G_CDS: 0.76 Total: -56.15 kcal Atomic # 8 Polarization: -79.33 SS G_CDS: -3.32 Total: -82.65 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 98.18 SS G_CDS: -0.97 Total: 97.21 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.24 -8.41 -44.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882128224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.437 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds