Wall clock time and date at job start Wed Apr 1 2020 06:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00821 * 2 1 4 4 S 1.65607 * 119.99729 * 180.02562 * 2 1 3 5 5 C 1.81405 * 108.32933 * 267.53031 * 4 2 1 6 6 O 1.42098 * 108.33584 * 32.46323 * 4 2 1 7 7 N 1.49352 * 108.73630 * 149.99975 * 4 2 1 8 8 S 1.65595 * 120.00217 * 179.97438 * 7 4 2 9 9 O 1.42100 * 106.39996 * 66.45917 * 8 7 4 10 10 O 1.42098 * 106.40488 * 293.54002 * 8 7 4 11 11 O 1.52204 * 107.21796 * 179.97438 * 8 7 4 12 12 C 1.35899 * 113.99959 * 74.99852 * 11 8 7 13 13 C 1.39158 * 119.93464 * 270.01944 * 12 11 8 14 14 C 1.38518 * 120.44462 * 179.97438 * 13 12 11 15 15 C 1.37670 * 120.30244 * 359.97438 * 14 13 12 16 16 C 1.40727 * 119.85943 * 0.03908 * 15 14 13 17 17 C 1.41405 * 120.21888 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99872 * 24.33418 * 17 16 15 19 19 C 1.39932 * 119.99801 * 204.32761 * 17 16 15 20 20 N 1.30821 * 120.00321 * 17.83450 * 19 17 16 21 21 Si 1.86801 * 119.99814 * 197.83280 * 19 17 16 22 22 H 1.48505 * 109.47171 * 90.00417 * 21 19 17 23 23 H 1.48499 * 109.47260 * 209.99968 * 21 19 17 24 24 H 1.48500 * 109.47303 * 330.00598 * 21 19 17 25 25 C 1.38096 * 119.92740 * 90.00143 * 12 11 8 26 26 H 1.08996 * 109.47799 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47168 * 300.00065 * 1 2 3 28 28 H 1.09002 * 109.47297 * 59.99574 * 1 2 3 29 29 H 1.08995 * 109.47248 * 270.00682 * 3 2 1 30 30 H 1.09013 * 109.46566 * 29.99966 * 3 2 1 31 31 H 1.08994 * 109.47578 * 149.99690 * 3 2 1 32 32 H 1.08997 * 109.47060 * 301.10507 * 5 4 2 33 33 H 1.09000 * 109.47158 * 61.10491 * 5 4 2 34 34 H 1.09002 * 109.47157 * 181.10837 * 5 4 2 35 35 H 1.07996 * 119.77985 * 0.02562 * 13 12 11 36 36 H 1.07999 * 119.84847 * 180.02562 * 14 13 12 37 37 H 1.08003 * 120.06729 * 179.97438 * 15 14 13 38 38 H 0.96995 * 120.00573 * 179.97438 * 20 19 17 39 39 H 1.07999 * 120.15712 * 359.74955 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 16 2.2929 -1.4342 -0.0006 5 6 2.6423 -1.8920 1.7196 6 8 1.5307 -2.3900 -0.7251 7 7 3.5935 -1.2370 -0.7077 8 16 4.6484 -2.5032 -0.8695 9 8 4.0157 -3.4458 -1.7241 10 8 5.0978 -2.8210 0.4405 11 8 5.8624 -1.9843 -1.6269 12 6 6.6878 -1.2045 -0.8803 13 6 6.4853 0.1713 -0.8293 14 6 7.3199 0.9760 -0.0713 15 6 8.3598 0.4223 0.6409 16 6 8.5765 -0.9676 0.5982 17 6 9.6420 -1.5444 1.3272 18 1 10.0384 -1.0388 2.1953 19 6 10.1827 -2.7705 0.9239 20 7 9.9657 -3.2143 -0.2874 21 14 11.2142 -3.7734 2.1153 22 1 10.3341 -4.6950 2.8778 23 1 12.2187 -4.5622 1.3576 24 1 11.9099 -2.8606 3.0576 25 6 7.7258 -1.7792 -0.1736 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 2.3792 1.5833 -1.0276 30 1 1.6084 2.0283 0.5139 31 1 3.1499 1.1382 0.5138 32 1 3.2279 -1.1042 2.1934 33 1 1.7040 -2.0215 2.2589 34 1 3.2051 -2.8253 1.7401 35 1 5.6713 0.6145 -1.3837 36 1 7.1536 2.0426 -0.0383 37 1 9.0085 1.0533 1.2303 38 1 10.3408 -4.0639 -0.5672 39 1 7.8807 -2.8474 -0.2095 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882128224.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:54:48 Heat of formation + Delta-G solvation = -100.633514 kcal Electronic energy + Delta-G solvation = -27588.427754 eV Core-core repulsion = 23558.196054 eV Total energy + Delta-G solvation = -4030.231700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.62901 -38.62815 -38.45836 -37.89678 -37.41683 -37.11368 -35.52683 -34.56850 -31.66787 -30.79792 -30.52376 -29.02116 -27.33501 -25.77727 -24.06159 -23.16759 -21.88144 -20.56422 -19.67479 -19.10657 -18.95339 -18.18476 -18.00304 -17.38345 -17.00441 -16.61062 -16.43876 -16.02438 -15.96352 -15.31045 -15.11002 -14.80316 -14.57562 -14.36064 -14.13836 -13.99914 -13.91757 -13.73386 -13.44967 -13.37769 -13.33001 -13.29747 -13.03311 -12.93707 -12.84599 -12.80512 -12.56239 -12.48221 -12.11561 -11.88104 -11.76620 -11.48330 -11.44452 -11.10115 -10.20377 -9.49667 -9.43887 -8.70654 -6.42753 -1.74835 -0.45438 0.71134 0.94581 1.17994 1.37569 1.45256 1.51114 1.52638 1.73582 2.18181 2.62254 2.71067 3.36544 3.40099 3.58010 3.60864 3.84872 3.92756 4.29938 4.42561 4.48034 4.58743 4.61710 4.72986 4.78605 4.85054 4.88059 4.97352 5.03382 5.09647 5.10838 5.25968 5.38622 5.58039 5.78230 5.88376 5.98211 6.23281 6.54227 6.82913 6.87688 8.27005 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.003860 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.346473 B = 7252.929910 C = 7761.607450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.949 5.949 3 C 0.085 3.915 4 S 2.556 3.444 5 C -0.637 4.637 6 O -0.986 6.986 7 N -1.539 6.539 8 S 2.779 3.221 9 O -1.008 7.008 10 O -1.006 7.006 11 O -0.670 6.670 12 C 0.060 3.940 13 C -0.223 4.223 14 C -0.071 4.071 15 C -0.215 4.215 16 C 0.085 3.915 17 C -0.487 4.487 18 H 0.096 0.904 19 C 0.027 3.973 20 N -0.830 5.830 21 Si 0.985 3.015 22 H -0.267 1.267 23 H -0.270 1.270 24 H -0.244 1.244 25 C -0.173 4.173 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.133 0.867 35 H 0.139 0.861 36 H 0.156 0.844 37 H 0.125 0.875 38 H 0.289 0.711 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.757 10.634 8.107 22.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.786 5.786 3 C -0.059 4.059 4 S 2.656 3.344 5 C -0.797 4.797 6 O -0.965 6.965 7 N -1.565 6.565 8 S 2.787 3.213 9 O -0.998 6.998 10 O -0.996 6.996 11 O -0.627 6.627 12 C 0.020 3.980 13 C -0.244 4.244 14 C -0.089 4.089 15 C -0.235 4.235 16 C 0.083 3.917 17 C -0.516 4.516 18 H 0.114 0.886 19 C -0.188 4.188 20 N -0.456 5.456 21 Si 0.805 3.195 22 H -0.192 1.192 23 H -0.195 1.195 24 H -0.167 1.167 25 C -0.195 4.195 26 H 0.096 0.904 27 H 0.133 0.867 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.188 0.812 33 H 0.203 0.797 34 H 0.151 0.849 35 H 0.157 0.843 36 H 0.174 0.826 37 H 0.143 0.857 38 H 0.099 0.901 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -17.678 9.658 6.955 21.311 hybrid contribution 0.620 -1.279 0.132 1.427 sum -17.058 8.380 7.086 20.283 Atomic orbital electron populations 1.22163 0.74614 1.04450 1.05928 1.55730 1.14931 1.17106 1.90844 1.21961 0.97084 0.83020 1.03856 1.06442 0.73546 0.74446 0.79930 1.30649 1.15447 1.14517 1.19126 1.93571 1.73295 1.61014 1.68595 1.76174 1.43517 1.65425 1.71336 1.01524 0.74434 0.72147 0.73174 1.93602 1.75486 1.62083 1.68657 1.93650 1.79826 1.84340 1.41758 1.85519 1.48587 1.70500 1.58099 1.18437 0.93042 0.89949 0.96576 1.20858 1.05721 0.89813 1.08032 1.20899 0.93378 0.99764 0.94811 1.21479 1.02068 0.93543 1.06454 1.17798 0.91378 0.92163 0.90400 1.19948 1.14661 1.04756 1.12197 0.88592 1.26966 0.97135 0.98303 0.96406 1.69884 1.37533 1.19823 1.18378 0.85157 0.77664 0.78224 0.78458 1.19193 1.19474 1.16677 1.21360 0.95719 1.00039 1.02411 0.90356 0.86746 0.89856 0.92176 0.86379 0.90010 0.81166 0.79708 0.84915 0.84315 0.82647 0.85701 0.90060 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.61 10.68 127.77 1.36 1.97 16 2 N -0.95 -14.40 3.63 -562.71 -2.04 -16.45 16 3 C 0.08 0.98 10.39 127.77 1.33 2.31 16 4 S 2.56 67.07 4.49 -37.15 -0.17 66.90 16 5 C -0.64 -11.39 10.27 113.37 1.16 -10.23 16 6 O -0.99 -34.41 16.52 -144.82 -2.39 -36.80 16 7 N -1.54 -55.43 10.27 37.02 0.38 -55.05 16 8 S 2.78 131.90 5.41 -37.15 -0.20 131.70 16 9 O -1.01 -53.34 17.48 -117.54 -2.05 -55.40 16 10 O -1.01 -48.21 14.24 -118.78 -1.69 -49.90 16 11 O -0.67 -35.11 10.22 -61.70 -0.63 -35.74 16 12 C 0.06 3.15 4.83 22.46 0.11 3.25 16 13 C -0.22 -9.63 9.84 22.56 0.22 -9.41 16 14 C -0.07 -2.74 10.02 22.20 0.22 -2.51 16 15 C -0.22 -9.64 9.79 22.74 0.22 -9.41 16 16 C 0.09 4.60 5.57 -21.30 -0.12 4.48 16 17 C -0.49 -25.84 9.05 23.46 0.21 -25.63 16 18 H 0.10 4.67 7.91 -2.91 -0.02 4.65 16 19 C 0.03 1.38 5.14 85.25 0.44 1.82 16 20 N -0.83 -46.14 10.95 21.82 0.24 -45.90 16 21 Si 0.98 38.83 29.59 68.60 2.03 40.86 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 24 H -0.24 -8.85 7.11 99.48 0.71 -8.15 16 25 C -0.17 -9.90 7.82 22.82 0.18 -9.72 16 26 H 0.08 0.74 7.26 -2.39 -0.02 0.72 16 27 H 0.11 0.04 8.14 -2.38 -0.02 0.02 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.12 0.43 8.07 -2.38 -0.02 0.41 16 31 H 0.08 1.01 7.99 -2.39 -0.02 0.99 16 32 H 0.17 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.19 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 3.16 6.69 -2.39 -0.02 3.14 16 35 H 0.14 5.17 8.06 -2.91 -0.02 5.15 16 36 H 0.16 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.13 4.90 8.06 -2.91 -0.02 4.88 16 38 H 0.29 14.66 8.30 -92.71 -0.77 13.89 16 39 H 0.10 6.16 6.16 -2.91 -0.02 6.14 16 Total: -1.00 -86.82 354.78 -0.12 -86.94 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 1.07 Total: 21.93 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 5.34 Total: -53.09 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -1.42 Total: -117.40 kcal Atomic # 8 Polarization: -171.07 SS G_CDS: -6.77 Total: -177.84 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.86 kcal Atomic # 16 Polarization: 198.97 SS G_CDS: -0.37 Total: 198.60 kcal Total: -86.82 -0.12 -86.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882128224.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.693 kcal (2) G-P(sol) polarization free energy of solvation -86.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds