Wall clock time and date at job start Wed Apr 1 2020 05:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.55257 * 2 1 4 4 S 1.81394 * 109.47348 * 325.67430 * 3 2 1 5 5 O 1.42102 * 110.54100 * 68.37341 * 4 3 2 6 6 O 1.42101 * 110.54401 * 291.62510 * 4 3 2 7 7 O 1.52201 * 104.44993 * 179.97438 * 4 3 2 8 8 C 1.35899 * 113.99773 * 74.99985 * 7 4 3 9 9 C 1.38826 * 120.02165 * 270.01798 * 8 7 4 10 10 C 1.38189 * 120.08099 * 179.97438 * 9 8 7 11 11 C 1.38156 * 120.12461 * 0.02562 * 10 9 8 12 12 C 1.38899 * 120.03714 * 359.74619 * 11 10 9 13 13 O 1.35746 * 120.03713 * 180.25339 * 12 11 10 14 14 C 1.34835 * 117.00593 * 354.73484 * 13 12 11 15 15 H 1.08005 * 119.99176 * 5.07388 * 14 13 12 16 16 C 1.38644 * 120.00250 * 185.07970 * 14 13 12 17 17 N 1.31551 * 120.00404 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99918 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47160 * 59.99340 * 18 16 14 20 20 H 1.48494 * 109.47474 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47048 * 299.99664 * 18 16 14 22 22 C 1.38571 * 120.01643 * 90.00464 * 8 7 4 23 23 C 1.53010 * 117.51231 * 214.30455 * 2 1 3 24 24 C 1.52998 * 117.49754 * 145.67975 * 2 1 3 25 25 F 1.39903 * 117.49604 * 215.00213 * 24 2 1 26 26 F 1.39902 * 117.49760 * 0.02562 * 24 2 1 27 27 H 1.09004 * 109.46988 * 34.40977 * 1 2 3 28 28 H 1.08997 * 109.47402 * 154.41517 * 1 2 3 29 29 H 1.09003 * 109.46977 * 274.41829 * 1 2 3 30 30 H 1.09000 * 109.46910 * 205.66987 * 3 2 1 31 31 H 1.09006 * 109.46690 * 85.67722 * 3 2 1 32 32 H 1.07994 * 119.95784 * 359.96364 * 9 8 7 33 33 H 1.07999 * 119.93821 * 179.97438 * 10 9 8 34 34 H 1.07991 * 119.98167 * 179.97438 * 11 10 9 35 35 H 0.97002 * 120.00191 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.06756 * 359.97438 * 22 8 7 37 37 H 1.09001 * 117.49627 * 0.02562 * 23 2 1 38 38 H 1.08993 * 117.49681 * 145.03293 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 16 1.1766 2.5351 -0.9644 5 8 -0.0525 2.7945 -0.3001 6 8 1.2061 2.1928 -2.3432 7 8 1.9295 3.8556 -0.8887 8 6 3.0397 3.9045 -1.6709 9 6 4.2666 3.5010 -1.1616 10 6 5.3962 3.5496 -1.9561 11 6 5.3085 4.0003 -3.2592 12 6 4.0827 4.4008 -3.7754 13 8 3.9957 4.8387 -5.0573 14 6 5.1509 4.9641 -5.7413 15 1 6.0804 4.6429 -5.2946 16 6 5.1456 5.5054 -7.0177 17 7 4.0135 5.8962 -7.5618 18 14 6.7462 5.6797 -7.9649 19 1 7.3629 4.3409 -8.1453 20 1 6.4717 6.2810 -9.2946 21 1 7.6766 6.5552 -7.2078 22 6 2.9478 4.3569 -2.9775 23 6 2.2368 -1.1210 -0.7648 24 6 2.2364 -1.1209 0.7652 25 9 3.4363 -0.8051 1.4115 26 9 1.4339 -2.0676 1.4108 27 1 -0.3633 0.8479 -0.5808 28 1 -0.3634 -0.9269 -0.4438 29 1 -0.3633 0.0792 1.0246 30 1 3.1823 1.3086 -0.4452 31 1 2.2768 1.7415 1.0248 32 1 4.3382 3.1488 -0.1433 33 1 6.3495 3.2356 -1.5575 34 1 6.1928 4.0378 -3.8779 35 1 4.0098 6.2746 -8.4550 36 1 1.9941 4.6706 -3.3756 37 1 1.6118 -1.8584 -1.2685 38 1 3.1720 -0.8751 -1.2678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882263443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:59 Heat of formation + Delta-G solvation = -162.786960 kcal Electronic energy + Delta-G solvation = -28740.333357 eV Core-core repulsion = 24121.273344 eV Total energy + Delta-G solvation = -4619.060013 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.99929 -47.66646 -40.77236 -38.79588 -38.14313 -37.21226 -36.20408 -36.03634 -32.52244 -30.26690 -30.09734 -29.01354 -28.37645 -25.61694 -23.12521 -23.00189 -22.15515 -20.79871 -20.20562 -18.66620 -18.13562 -17.97149 -17.62257 -16.90306 -16.71251 -16.45491 -16.23459 -15.54905 -15.20528 -15.00142 -14.50479 -14.43020 -14.34956 -14.23166 -13.91544 -13.88355 -13.60311 -13.55108 -13.43196 -13.19134 -12.72627 -12.40394 -12.36621 -12.24708 -12.09132 -11.92003 -11.85277 -11.46178 -11.44823 -11.35116 -11.02590 -10.93546 -10.90820 -10.61775 -10.03090 -9.65160 -9.05862 -8.51278 -7.62928 -6.64650 -4.24149 0.00310 1.58913 1.92196 2.21998 2.55088 2.67746 3.02796 3.03505 3.07591 3.39316 3.65930 3.77148 3.80833 4.01374 4.06372 4.16503 4.23428 4.67959 4.80060 4.87401 4.96812 5.06971 5.14889 5.17210 5.22544 5.36748 5.38838 5.39311 5.51946 5.69289 5.73531 5.93554 6.27352 6.46588 6.59319 6.70871 6.98215 7.11726 7.37553 7.77204 8.78450 9.42142 10.51705 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002849 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.768793 B = 9824.411231 C =10333.646918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.115 4.115 3 C -0.629 4.629 4 S 2.605 3.395 5 O -0.932 6.932 6 O -0.933 6.933 7 O -0.659 6.659 8 C 0.095 3.905 9 C -0.234 4.234 10 C -0.053 4.053 11 C -0.220 4.220 12 C 0.163 3.837 13 O -0.160 6.160 14 C -0.397 4.397 15 H 0.097 0.903 16 C 0.043 3.957 17 N -0.850 5.850 18 Si 0.946 3.054 19 H -0.268 1.268 20 H -0.276 1.276 21 H -0.268 1.268 22 C -0.154 4.154 23 C -0.159 4.159 24 C 0.212 3.788 25 F -0.155 7.155 26 F -0.156 7.156 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.139 0.861 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.133 0.867 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.759 -11.681 13.771 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.117 4.117 3 C -0.752 4.752 4 S 2.698 3.302 5 O -0.930 6.930 6 O -0.931 6.931 7 O -0.619 6.619 8 C 0.053 3.947 9 C -0.255 4.255 10 C -0.071 4.071 11 C -0.240 4.240 12 C 0.107 3.893 13 O -0.062 6.062 14 C -0.472 4.472 15 H 0.114 0.886 16 C -0.164 4.164 17 N -0.483 5.483 18 Si 0.770 3.230 19 H -0.192 1.192 20 H -0.201 1.201 21 H -0.193 1.193 22 C -0.176 4.176 23 C -0.197 4.197 24 C 0.175 3.825 25 F -0.136 7.136 26 F -0.136 7.136 27 H 0.093 0.907 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.156 0.844 35 H 0.085 0.915 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.645 -11.113 13.173 17.313 hybrid contribution 1.272 -0.334 0.390 1.372 sum -0.373 -11.447 13.563 17.751 Atomic orbital electron populations 1.21925 0.88934 1.04780 1.05295 1.22233 0.96820 0.89711 1.02977 1.30597 1.16979 1.09523 1.18128 1.05431 0.75147 0.74153 0.75424 1.93620 1.39473 1.82494 1.77427 1.93711 1.86035 1.83006 1.30367 1.85622 1.46953 1.58651 1.70641 1.17553 0.81873 1.06498 0.88727 1.20645 0.91512 1.12537 1.00852 1.20580 0.96903 0.96570 0.93089 1.21366 0.98618 1.07220 0.96843 1.18919 0.92127 0.92475 0.85730 1.83990 1.34025 1.70901 1.17293 1.21385 0.84743 1.43164 0.97918 0.88559 1.25384 0.99323 0.95532 0.96136 1.70028 1.25837 1.36557 1.15861 0.85706 0.79547 0.79179 0.78606 1.19248 1.20093 1.19271 1.20163 0.99387 1.06525 0.91558 1.24722 1.04696 0.99525 0.90735 1.19985 0.80686 0.92854 0.89024 1.93034 1.44446 1.92603 1.83478 1.93030 1.72210 1.64825 1.83573 0.90693 0.89390 0.89186 0.83214 0.83465 0.85930 0.85703 0.84387 0.91484 0.84719 0.84856 0.84938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 8.98 37.16 0.33 -1.15 16 2 C -0.12 -1.17 2.48 -154.50 -0.38 -1.55 16 3 C -0.63 -6.69 5.27 37.16 0.20 -6.50 16 4 S 2.61 38.50 3.95 -107.50 -0.42 38.08 16 5 O -0.93 -15.07 15.94 -67.04 -1.07 -16.14 16 6 O -0.93 -16.54 16.26 -67.03 -1.09 -17.64 16 7 O -0.66 -10.81 10.05 -51.75 -0.52 -11.33 16 8 C 0.09 1.70 4.80 -39.24 -0.19 1.51 16 9 C -0.23 -3.56 8.46 -39.38 -0.33 -3.89 16 10 C -0.05 -0.82 10.03 -39.63 -0.40 -1.22 16 11 C -0.22 -4.21 9.17 -39.37 -0.36 -4.57 16 12 C 0.16 3.70 6.65 -39.13 -0.26 3.44 16 13 O -0.16 -4.32 9.76 0.04 0.00 -4.32 16 14 C -0.40 -10.29 9.49 30.88 0.29 -10.00 16 15 H 0.10 2.23 5.20 -52.48 -0.27 1.96 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.01 16 17 N -0.85 -23.69 13.67 55.48 0.76 -22.93 16 18 Si 0.95 19.07 29.55 -169.99 -5.02 14.05 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 C -0.15 -3.26 8.99 -39.25 -0.35 -3.61 16 23 C -0.16 -1.35 9.79 -26.73 -0.26 -1.61 16 24 C 0.21 2.12 5.14 -26.73 -0.14 1.99 16 25 F -0.16 -1.71 17.14 2.25 0.04 -1.67 16 26 F -0.16 -1.63 17.14 2.25 0.04 -1.59 16 27 H 0.07 0.84 4.58 -47.14 -0.22 0.63 16 28 H 0.09 0.66 7.90 -51.93 -0.41 0.25 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.15 1.43 6.36 -51.92 -0.33 1.10 16 31 H 0.15 1.24 8.14 -51.92 -0.42 0.82 16 32 H 0.12 1.41 7.49 -52.49 -0.39 1.01 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.14 2.54 5.63 -52.49 -0.30 2.25 16 35 H 0.28 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.13 2.86 8.06 -52.49 -0.42 2.44 16 37 H 0.13 0.85 8.05 -51.93 -0.42 0.43 16 38 H 0.13 1.00 8.05 -51.93 -0.42 0.58 16 LS Contribution 343.49 15.07 5.18 5.18 Total: -1.00 -31.99 343.49 -7.64 -39.63 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -3.58 Total: 4.86 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -1.95 Total: -26.16 kcal Atomic # 7 Polarization: -23.69 SS G_CDS: 0.76 Total: -22.93 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.68 Total: -49.43 kcal Atomic # 9 Polarization: -3.34 SS G_CDS: 0.08 Total: -3.27 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Atomic # 16 Polarization: 38.50 SS G_CDS: -0.42 Total: 38.08 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.99 -7.64 -39.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882263443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.160 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds