Wall clock time and date at job start Wed Apr 1 2020 05:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 115.55257 * 2 1 4 4 S 1.81394 * 109.47348 * 325.67430 * 3 2 1 5 5 O 1.42102 * 110.54100 * 68.37341 * 4 3 2 6 6 O 1.42101 * 110.54401 * 291.62510 * 4 3 2 7 7 O 1.52201 * 104.44993 * 179.97438 * 4 3 2 8 8 C 1.35899 * 113.99773 * 74.99985 * 7 4 3 9 9 C 1.38826 * 120.02165 * 270.01798 * 8 7 4 10 10 C 1.38189 * 120.08099 * 179.97438 * 9 8 7 11 11 C 1.38156 * 120.12461 * 0.02562 * 10 9 8 12 12 C 1.38899 * 120.03714 * 359.74619 * 11 10 9 13 13 O 1.35746 * 120.03713 * 180.25339 * 12 11 10 14 14 C 1.34835 * 117.00593 * 354.73484 * 13 12 11 15 15 H 1.08005 * 119.99176 * 5.07388 * 14 13 12 16 16 C 1.38644 * 120.00250 * 185.07970 * 14 13 12 17 17 N 1.31551 * 120.00404 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99918 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47160 * 59.99340 * 18 16 14 20 20 H 1.48494 * 109.47474 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47048 * 299.99664 * 18 16 14 22 22 C 1.38571 * 120.01643 * 90.00464 * 8 7 4 23 23 C 1.53010 * 117.51231 * 214.30455 * 2 1 3 24 24 C 1.52998 * 117.49754 * 145.67975 * 2 1 3 25 25 F 1.39903 * 117.49604 * 215.00213 * 24 2 1 26 26 F 1.39902 * 117.49760 * 0.02562 * 24 2 1 27 27 H 1.09004 * 109.46988 * 34.40977 * 1 2 3 28 28 H 1.08997 * 109.47402 * 154.41517 * 1 2 3 29 29 H 1.09003 * 109.46977 * 274.41829 * 1 2 3 30 30 H 1.09000 * 109.46910 * 205.66987 * 3 2 1 31 31 H 1.09006 * 109.46690 * 85.67722 * 3 2 1 32 32 H 1.07994 * 119.95784 * 359.96364 * 9 8 7 33 33 H 1.07999 * 119.93821 * 179.97438 * 10 9 8 34 34 H 1.07991 * 119.98167 * 179.97438 * 11 10 9 35 35 H 0.97002 * 120.00191 * 180.02562 * 17 16 14 36 36 H 1.08000 * 120.06756 * 359.97438 * 22 8 7 37 37 H 1.09001 * 117.49627 * 0.02562 * 23 2 1 38 38 H 1.08993 * 117.49681 * 145.03293 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 16 1.1766 2.5351 -0.9644 5 8 -0.0525 2.7945 -0.3001 6 8 1.2061 2.1928 -2.3432 7 8 1.9295 3.8556 -0.8887 8 6 3.0397 3.9045 -1.6709 9 6 4.2666 3.5010 -1.1616 10 6 5.3962 3.5496 -1.9561 11 6 5.3085 4.0003 -3.2592 12 6 4.0827 4.4008 -3.7754 13 8 3.9957 4.8387 -5.0573 14 6 5.1509 4.9641 -5.7413 15 1 6.0804 4.6429 -5.2946 16 6 5.1456 5.5054 -7.0177 17 7 4.0135 5.8962 -7.5618 18 14 6.7462 5.6797 -7.9649 19 1 7.3629 4.3409 -8.1453 20 1 6.4717 6.2810 -9.2946 21 1 7.6766 6.5552 -7.2078 22 6 2.9478 4.3569 -2.9775 23 6 2.2368 -1.1210 -0.7648 24 6 2.2364 -1.1209 0.7652 25 9 3.4363 -0.8051 1.4115 26 9 1.4339 -2.0676 1.4108 27 1 -0.3633 0.8479 -0.5808 28 1 -0.3634 -0.9269 -0.4438 29 1 -0.3633 0.0792 1.0246 30 1 3.1823 1.3086 -0.4452 31 1 2.2768 1.7415 1.0248 32 1 4.3382 3.1488 -0.1433 33 1 6.3495 3.2356 -1.5575 34 1 6.1928 4.0378 -3.8779 35 1 4.0098 6.2746 -8.4550 36 1 1.9941 4.6706 -3.3756 37 1 1.6118 -1.8584 -1.2685 38 1 3.1720 -0.8751 -1.2678 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882263443.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:56 Heat of formation + Delta-G solvation = -184.385537 kcal Electronic energy + Delta-G solvation = -28741.269942 eV Core-core repulsion = 24121.273344 eV Total energy + Delta-G solvation = -4619.996598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -49.76058 -48.43385 -42.15417 -40.40977 -38.91536 -38.47553 -37.69025 -37.34989 -34.34090 -31.71812 -31.05939 -30.40072 -29.22510 -27.43391 -24.57395 -23.71656 -23.57883 -22.02031 -21.29060 -20.06558 -19.31829 -19.17684 -18.91313 -18.07195 -17.92817 -17.54264 -17.08681 -16.91488 -16.58392 -16.34283 -15.97918 -15.66817 -15.33056 -15.19796 -15.11531 -15.04702 -14.66130 -14.60413 -14.45596 -14.31446 -13.92902 -13.71258 -13.50243 -13.42782 -13.36953 -13.07499 -13.05152 -12.95400 -12.83461 -12.51243 -12.36268 -12.34101 -12.15354 -11.64416 -11.36277 -10.84290 -10.81613 -9.95810 -9.25457 -8.49139 -6.19551 -1.18527 0.14926 0.46022 0.94884 1.39127 1.49608 1.55874 1.79123 1.98364 2.16874 2.36944 2.57496 2.81574 2.90336 3.00534 3.07144 3.28765 3.34778 3.49795 3.79280 3.87751 4.03299 4.11441 4.16546 4.20920 4.30273 4.46254 4.51775 4.59359 4.63096 4.75297 4.76265 4.97863 5.00276 5.07600 5.15275 5.44100 5.52669 5.92336 5.95787 6.93860 7.68712 8.73298 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.018180 B = 0.002849 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.768793 B = 9824.411231 C =10333.646918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.133 4.133 3 C -0.604 4.604 4 S 2.600 3.400 5 O -0.955 6.955 6 O -0.973 6.973 7 O -0.667 6.667 8 C 0.095 3.905 9 C -0.198 4.198 10 C -0.038 4.038 11 C -0.218 4.218 12 C 0.132 3.868 13 O -0.224 6.224 14 C -0.418 4.418 15 H 0.117 0.883 16 C -0.022 4.022 17 N -0.919 5.919 18 Si 1.023 2.977 19 H -0.252 1.252 20 H -0.278 1.278 21 H -0.253 1.253 22 C -0.192 4.192 23 C -0.150 4.150 24 C 0.213 3.787 25 F -0.160 7.160 26 F -0.160 7.160 27 H 0.054 0.946 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.183 0.817 34 H 0.144 0.856 35 H 0.274 0.726 36 H 0.108 0.892 37 H 0.153 0.847 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.400 -14.131 17.141 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.135 4.135 3 C -0.733 4.733 4 S 2.699 3.301 5 O -0.953 6.953 6 O -0.971 6.971 7 O -0.626 6.626 8 C 0.053 3.947 9 C -0.218 4.218 10 C -0.056 4.056 11 C -0.238 4.238 12 C 0.080 3.920 13 O -0.130 6.130 14 C -0.493 4.493 15 H 0.134 0.866 16 C -0.221 4.221 17 N -0.556 5.556 18 Si 0.842 3.158 19 H -0.176 1.176 20 H -0.203 1.203 21 H -0.177 1.177 22 C -0.214 4.214 23 C -0.188 4.188 24 C 0.176 3.824 25 F -0.140 7.140 26 F -0.141 7.141 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.115 0.885 30 H 0.189 0.811 31 H 0.197 0.803 32 H 0.198 0.802 33 H 0.201 0.799 34 H 0.161 0.839 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.171 0.829 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.489 -13.545 16.582 21.463 hybrid contribution 0.175 0.215 -0.156 0.318 sum 1.664 -13.330 16.426 21.219 Atomic orbital electron populations 1.22022 0.89198 1.04983 1.05639 1.22329 0.96941 0.89649 1.04622 1.30352 1.16182 1.08110 1.18633 1.05326 0.75351 0.74321 0.75126 1.93593 1.41163 1.83129 1.77406 1.93678 1.86669 1.83495 1.33278 1.85586 1.46883 1.60275 1.69895 1.17738 0.83521 1.05780 0.87615 1.21394 0.89479 1.08024 1.02952 1.21219 0.99328 0.94034 0.90983 1.21656 0.97116 1.06293 0.98760 1.19429 0.94131 0.93249 0.85158 1.83974 1.35041 1.74365 1.19605 1.21976 0.85416 1.43432 0.98470 0.86566 1.26721 1.03223 0.95018 0.97108 1.70199 1.28799 1.40059 1.16551 0.84583 0.74710 0.79863 0.76677 1.17623 1.20267 1.17709 1.20255 0.98377 1.09101 0.93667 1.24988 1.05271 0.98671 0.89826 1.20034 0.80251 0.92373 0.89785 1.93025 1.44629 1.92640 1.83708 1.93026 1.72391 1.64882 1.83789 0.92706 0.87411 0.88494 0.81119 0.80350 0.80229 0.79936 0.83857 0.91692 0.87390 0.82915 0.83563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 8.98 71.98 0.65 -2.18 16 2 C -0.13 -2.23 2.48 -52.18 -0.13 -2.36 16 3 C -0.60 -10.27 5.27 71.98 0.38 -9.89 16 4 S 2.60 74.27 3.95 -56.49 -0.22 74.05 16 5 O -0.95 -30.84 15.94 -118.57 -1.89 -32.73 16 6 O -0.97 -35.27 16.26 -118.57 -1.93 -37.20 16 7 O -0.67 -21.13 10.05 -61.51 -0.62 -21.75 16 8 C 0.09 3.24 4.80 22.49 0.11 3.35 16 9 C -0.20 -4.93 8.46 22.40 0.19 -4.75 16 10 C -0.04 -0.96 10.03 22.24 0.22 -0.74 16 11 C -0.22 -7.96 9.17 22.41 0.21 -7.75 16 12 C 0.13 6.22 6.65 22.56 0.15 6.37 16 13 O -0.22 -13.01 9.76 -22.76 -0.22 -13.23 16 14 C -0.42 -22.74 9.49 67.92 0.64 -22.10 16 15 H 0.12 5.47 5.20 -2.91 -0.02 5.45 16 16 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 17 N -0.92 -55.16 13.67 21.61 0.30 -54.87 16 18 Si 1.02 40.11 29.55 68.60 2.03 42.14 16 19 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 20 H -0.28 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 22 C -0.19 -8.51 8.99 22.49 0.20 -8.31 16 23 C -0.15 -1.94 9.79 30.60 0.30 -1.64 16 24 C 0.21 3.41 5.14 30.59 0.16 3.56 16 25 F -0.16 -2.77 17.14 44.97 0.77 -2.00 16 26 F -0.16 -2.84 17.14 44.97 0.77 -2.07 16 27 H 0.05 1.20 4.58 -5.43 -0.02 1.18 16 28 H 0.11 1.39 7.90 -2.39 -0.02 1.37 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.17 2.22 6.36 -2.39 -0.02 2.20 16 31 H 0.18 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.18 2.55 7.49 -2.91 -0.02 2.53 16 33 H 0.18 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.14 5.03 5.63 -2.92 -0.02 5.01 16 35 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 37 H 0.15 1.35 8.05 -2.39 -0.02 1.33 16 38 H 0.15 1.50 8.05 -2.39 -0.02 1.48 16 Total: -1.00 -79.17 343.49 3.64 -75.53 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 1.11 Total: 19.29 kcal Atomic # 6 Polarization: -50.71 SS G_CDS: 3.54 Total: -47.16 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: 0.30 Total: -54.87 kcal Atomic # 8 Polarization: -100.25 SS G_CDS: -4.66 Total: -104.91 kcal Atomic # 9 Polarization: -5.61 SS G_CDS: 1.54 Total: -4.07 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 74.27 SS G_CDS: -0.22 Total: 74.05 kcal Total: -79.17 3.64 -75.53 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882263443.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.858 kcal (2) G-P(sol) polarization free energy of solvation -79.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds