Wall clock time and date at job start Wed Apr 1 2020 05:40:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 115.55317 * 2 1 4 4 S 1.81404 * 109.46965 * 34.41924 * 3 2 1 5 5 O 1.42104 * 110.54101 * 291.62664 * 4 3 2 6 6 O 1.42101 * 110.54261 * 68.37309 * 4 3 2 7 7 O 1.52198 * 104.45103 * 179.97438 * 4 3 2 8 8 C 1.35898 * 113.99662 * 75.00120 * 7 4 3 9 9 C 1.38823 * 120.02344 * 90.00464 * 8 7 4 10 10 C 1.38192 * 120.08167 * 179.97438 * 9 8 7 11 11 C 1.38149 * 120.12477 * 359.95477 * 10 9 8 12 12 C 1.38897 * 120.03948 * 359.97438 * 11 10 9 13 13 O 1.35747 * 120.03853 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00444 * 354.45752 * 13 12 11 15 15 H 1.08006 * 119.99302 * 5.05626 * 14 13 12 16 16 C 1.38645 * 120.00618 * 185.05877 * 14 13 12 17 17 N 1.31565 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00500 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46881 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47395 * 119.99513 * 18 16 14 21 21 H 1.48503 * 109.47208 * 240.00061 * 18 16 14 22 22 C 1.38573 * 120.01804 * 269.72058 * 8 7 4 23 23 C 1.53003 * 117.49981 * 145.67369 * 2 1 3 24 24 C 1.53002 * 117.50013 * 214.33210 * 2 1 3 25 25 F 1.39900 * 117.49795 * 359.97438 * 24 2 1 26 26 F 1.39902 * 117.50010 * 144.97083 * 24 2 1 27 27 H 1.09002 * 109.47040 * 85.57883 * 1 2 3 28 28 H 1.08995 * 109.47154 * 205.58452 * 1 2 3 29 29 H 1.09004 * 109.46641 * 325.58266 * 1 2 3 30 30 H 1.09003 * 109.47045 * 154.41549 * 3 2 1 31 31 H 1.09000 * 109.47294 * 274.42248 * 3 2 1 32 32 H 1.07997 * 119.95848 * 359.96851 * 9 8 7 33 33 H 1.08007 * 119.93498 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.97756 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99676 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.06591 * 0.02562 * 22 8 7 37 37 H 1.08999 * 117.49651 * 215.00089 * 23 2 1 38 38 H 1.08996 * 117.49876 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 16 1.1779 2.5344 0.9667 5 8 -0.0522 2.7942 0.3044 6 8 1.2094 2.1911 2.3453 7 8 1.9313 3.8547 0.8920 8 6 1.8198 4.4877 -0.3054 9 6 0.7873 5.3904 -0.5203 10 6 0.6731 6.0352 -1.7373 11 6 1.5861 5.7843 -2.7432 12 6 2.6220 4.8831 -2.5332 13 8 3.5195 4.6370 -3.5215 14 6 3.2843 5.2106 -4.7188 15 1 2.4594 5.8980 -4.8355 16 6 4.1011 4.9181 -5.8002 17 7 5.1062 4.0811 -5.6579 18 14 3.7757 5.7133 -7.4588 19 1 2.5956 6.6089 -7.3553 20 1 4.9633 6.5043 -7.8702 21 1 3.5089 4.6586 -8.4697 22 6 2.7401 4.2368 -1.3105 23 6 2.2365 -1.1208 0.7653 24 6 2.2365 -1.1207 -0.7654 25 9 1.4340 -2.0673 -1.4113 26 9 3.4361 -0.8047 -1.4122 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3633 -0.9269 0.4438 29 1 -0.3633 0.8478 0.5809 30 1 3.1829 1.3083 0.4438 31 1 2.2752 1.7424 -1.0246 32 1 0.0724 5.5890 0.2644 33 1 -0.1314 6.7367 -1.9021 34 1 1.4948 6.2898 -3.6932 35 1 5.6775 3.8762 -6.4146 36 1 3.5465 3.5380 -1.1437 37 1 3.1713 -0.8747 1.2688 38 1 1.6113 -1.8584 1.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882263444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:02 Heat of formation + Delta-G solvation = -163.893740 kcal Electronic energy + Delta-G solvation = -29100.914074 eV Core-core repulsion = 24481.806067 eV Total energy + Delta-G solvation = -4619.108007 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.80434 -47.46901 -40.77462 -38.81203 -38.03989 -37.21675 -36.19734 -36.06701 -32.51793 -30.47206 -29.76658 -29.01869 -28.27849 -25.62897 -23.12081 -22.87740 -22.13613 -20.79379 -20.11915 -18.67943 -18.06893 -17.89735 -17.51312 -16.94955 -16.60477 -16.47517 -16.05994 -15.38842 -15.19066 -15.08766 -14.42721 -14.33462 -14.24169 -14.10939 -13.92162 -13.70237 -13.64569 -13.42390 -13.30681 -13.13905 -12.67567 -12.53140 -12.38591 -12.17012 -12.13236 -11.89509 -11.73992 -11.48004 -11.42592 -11.31415 -11.01747 -10.93072 -10.80702 -10.56891 -9.89445 -9.65860 -9.06506 -8.55516 -7.61689 -6.65787 -4.26248 0.03101 1.55455 1.97354 2.20849 2.71100 2.78178 3.01360 3.03448 3.09253 3.44199 3.75535 3.79473 3.84960 3.99044 4.13431 4.26164 4.39955 4.70982 4.85566 4.91420 5.02649 5.13706 5.18683 5.21025 5.30541 5.45659 5.47863 5.54700 5.56434 5.71342 5.82282 5.90090 6.23688 6.45717 6.59308 6.73572 6.98580 7.10461 7.37169 7.76296 8.78425 9.40234 10.50917 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.004008 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.116205 B = 6983.520968 C = 8853.693876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.629 4.629 4 S 2.609 3.391 5 O -0.941 6.941 6 O -0.933 6.933 7 O -0.660 6.660 8 C 0.097 3.903 9 C -0.179 4.179 10 C -0.057 4.057 11 C -0.212 4.212 12 C 0.164 3.836 13 O -0.165 6.165 14 C -0.397 4.397 15 H 0.098 0.902 16 C 0.043 3.957 17 N -0.853 5.853 18 Si 0.945 3.055 19 H -0.265 1.265 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.163 4.163 24 C 0.216 3.784 25 F -0.155 7.155 26 F -0.150 7.150 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.157 0.843 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.139 0.861 35 H 0.273 0.727 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.985 -6.297 9.859 13.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 C -0.753 4.753 4 S 2.703 3.297 5 O -0.939 6.939 6 O -0.932 6.932 7 O -0.619 6.619 8 C 0.056 3.944 9 C -0.201 4.201 10 C -0.075 4.075 11 C -0.232 4.232 12 C 0.109 3.891 13 O -0.067 6.067 14 C -0.473 4.473 15 H 0.115 0.885 16 C -0.163 4.163 17 N -0.487 5.487 18 Si 0.769 3.231 19 H -0.189 1.189 20 H -0.200 1.200 21 H -0.199 1.199 22 C -0.230 4.230 23 C -0.201 4.201 24 C 0.178 3.822 25 F -0.136 7.136 26 F -0.131 7.131 27 H 0.111 0.889 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.164 0.836 31 H 0.174 0.826 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.157 0.843 35 H 0.083 0.917 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.941 -6.261 10.233 13.860 hybrid contribution 0.592 -0.143 -1.348 1.479 sum -6.349 -6.404 8.885 12.660 Atomic orbital electron populations 1.21913 0.88865 1.04397 1.05631 1.22214 0.96884 0.89656 1.03043 1.30583 1.16075 1.09372 1.19272 1.05267 0.74931 0.74324 0.75146 1.93660 1.42262 1.81115 1.76889 1.93614 1.86447 1.82759 1.30333 1.85611 1.82568 1.51459 1.42286 1.17572 0.98646 0.98922 0.79278 1.20676 0.99349 1.00760 0.99298 1.20683 0.97664 0.97505 0.91677 1.21435 0.97607 1.02789 1.01364 1.18848 0.88969 0.92328 0.88982 1.83978 1.40893 1.63507 1.18358 1.21450 1.16273 1.25920 0.83636 0.88503 1.25362 0.95152 0.96443 0.99369 1.70044 1.15190 1.31234 1.32190 0.85587 0.78840 0.78809 0.79868 1.18867 1.19956 1.19939 1.20111 1.02496 1.07863 0.92517 1.24720 1.04458 0.99742 0.91176 1.19929 0.80900 0.92661 0.88689 1.93028 1.72241 1.64760 1.83556 1.93079 1.44106 1.92527 1.83343 0.88918 0.89610 0.90751 0.83603 0.82552 0.85714 0.85564 0.84311 0.91671 0.84861 0.85243 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 8.99 37.16 0.33 -1.33 16 2 C -0.12 -1.36 2.48 -154.51 -0.38 -1.74 16 3 C -0.63 -8.00 5.28 37.16 0.20 -7.80 16 4 S 2.61 38.59 3.95 -107.50 -0.42 38.16 16 5 O -0.94 -15.38 14.11 -67.03 -0.95 -16.32 16 6 O -0.93 -15.07 18.09 -67.04 -1.21 -16.28 16 7 O -0.66 -10.76 10.05 -51.74 -0.52 -11.28 16 8 C 0.10 1.74 4.79 -39.24 -0.19 1.55 16 9 C -0.18 -3.07 9.05 -39.38 -0.36 -3.43 16 10 C -0.06 -0.94 10.03 -39.63 -0.40 -1.34 16 11 C -0.21 -4.09 9.17 -39.37 -0.36 -4.46 16 12 C 0.16 3.60 6.64 -39.13 -0.26 3.34 16 13 O -0.17 -4.31 9.76 0.05 0.00 -4.31 16 14 C -0.40 -10.20 9.49 30.88 0.29 -9.91 16 15 H 0.10 2.25 5.20 -52.48 -0.27 1.98 16 16 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 17 N -0.85 -23.58 13.67 55.48 0.76 -22.82 16 18 Si 0.94 19.16 29.55 -169.99 -5.02 14.14 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 C -0.21 -4.03 8.41 -39.25 -0.33 -4.36 16 23 C -0.16 -1.49 9.80 -26.69 -0.26 -1.75 16 24 C 0.22 2.67 5.14 -26.69 -0.14 2.53 16 25 F -0.16 -1.99 17.14 2.25 0.04 -1.96 16 26 F -0.15 -2.21 17.14 2.25 0.04 -2.17 16 27 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 29 H 0.07 0.87 4.58 -47.21 -0.22 0.65 16 30 H 0.15 1.50 7.90 -51.92 -0.41 1.09 16 31 H 0.16 2.13 6.63 -51.92 -0.34 1.79 16 32 H 0.12 1.88 8.06 -52.49 -0.42 1.46 16 33 H 0.13 1.64 8.06 -52.48 -0.42 1.22 16 34 H 0.14 2.60 5.63 -52.49 -0.30 2.30 16 35 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 36 H 0.13 2.36 7.52 -52.49 -0.39 1.96 16 37 H 0.13 0.97 8.05 -51.93 -0.42 0.55 16 38 H 0.13 0.86 8.05 -51.93 -0.42 0.44 16 LS Contribution 343.57 15.07 5.18 5.18 Total: -1.00 -31.65 343.57 -7.64 -39.30 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -3.58 Total: 6.06 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: -1.95 Total: -27.70 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.76 Total: -22.82 kcal Atomic # 8 Polarization: -45.52 SS G_CDS: -2.68 Total: -48.20 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.08 Total: -4.12 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 38.59 SS G_CDS: -0.42 Total: 38.16 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.65 -7.64 -39.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882263444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.598 kcal (2) G-P(sol) polarization free energy of solvation -31.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds