Wall clock time and date at job start Wed Apr 1 2020 05:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 115.55317 * 2 1 4 4 S 1.81404 * 109.46965 * 34.41924 * 3 2 1 5 5 O 1.42104 * 110.54101 * 291.62664 * 4 3 2 6 6 O 1.42101 * 110.54261 * 68.37309 * 4 3 2 7 7 O 1.52198 * 104.45103 * 179.97438 * 4 3 2 8 8 C 1.35898 * 113.99662 * 75.00120 * 7 4 3 9 9 C 1.38823 * 120.02344 * 90.00464 * 8 7 4 10 10 C 1.38192 * 120.08167 * 179.97438 * 9 8 7 11 11 C 1.38149 * 120.12477 * 359.95477 * 10 9 8 12 12 C 1.38897 * 120.03948 * 359.97438 * 11 10 9 13 13 O 1.35747 * 120.03853 * 180.02562 * 12 11 10 14 14 C 1.34833 * 117.00444 * 354.45752 * 13 12 11 15 15 H 1.08006 * 119.99302 * 5.05626 * 14 13 12 16 16 C 1.38645 * 120.00618 * 185.05877 * 14 13 12 17 17 N 1.31565 * 119.99797 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00500 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46881 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47395 * 119.99513 * 18 16 14 21 21 H 1.48503 * 109.47208 * 240.00061 * 18 16 14 22 22 C 1.38573 * 120.01804 * 269.72058 * 8 7 4 23 23 C 1.53003 * 117.49981 * 145.67369 * 2 1 3 24 24 C 1.53002 * 117.50013 * 214.33210 * 2 1 3 25 25 F 1.39900 * 117.49795 * 359.97438 * 24 2 1 26 26 F 1.39902 * 117.50010 * 144.97083 * 24 2 1 27 27 H 1.09002 * 109.47040 * 85.57883 * 1 2 3 28 28 H 1.08995 * 109.47154 * 205.58452 * 1 2 3 29 29 H 1.09004 * 109.46641 * 325.58266 * 1 2 3 30 30 H 1.09003 * 109.47045 * 154.41549 * 3 2 1 31 31 H 1.09000 * 109.47294 * 274.42248 * 3 2 1 32 32 H 1.07997 * 119.95848 * 359.96851 * 9 8 7 33 33 H 1.08007 * 119.93498 * 179.97438 * 10 9 8 34 34 H 1.07998 * 119.97756 * 180.02562 * 11 10 9 35 35 H 0.97001 * 119.99676 * 179.97438 * 17 16 14 36 36 H 1.08001 * 120.06591 * 0.02562 * 22 8 7 37 37 H 1.08999 * 117.49651 * 215.00089 * 23 2 1 38 38 H 1.08996 * 117.49876 * 0.02562 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 16 1.1779 2.5344 0.9667 5 8 -0.0522 2.7942 0.3044 6 8 1.2094 2.1911 2.3453 7 8 1.9313 3.8547 0.8920 8 6 1.8198 4.4877 -0.3054 9 6 0.7873 5.3904 -0.5203 10 6 0.6731 6.0352 -1.7373 11 6 1.5861 5.7843 -2.7432 12 6 2.6220 4.8831 -2.5332 13 8 3.5195 4.6370 -3.5215 14 6 3.2843 5.2106 -4.7188 15 1 2.4594 5.8980 -4.8355 16 6 4.1011 4.9181 -5.8002 17 7 5.1062 4.0811 -5.6579 18 14 3.7757 5.7133 -7.4588 19 1 2.5956 6.6089 -7.3553 20 1 4.9633 6.5043 -7.8702 21 1 3.5089 4.6586 -8.4697 22 6 2.7401 4.2368 -1.3105 23 6 2.2365 -1.1208 0.7653 24 6 2.2365 -1.1207 -0.7654 25 9 1.4340 -2.0673 -1.4113 26 9 3.4361 -0.8047 -1.4122 27 1 -0.3633 0.0792 -1.0246 28 1 -0.3633 -0.9269 0.4438 29 1 -0.3633 0.8478 0.5809 30 1 3.1829 1.3083 0.4438 31 1 2.2752 1.7424 -1.0246 32 1 0.0724 5.5890 0.2644 33 1 -0.1314 6.7367 -1.9021 34 1 1.4948 6.2898 -3.6932 35 1 5.6775 3.8762 -6.4146 36 1 3.5465 3.5380 -1.1437 37 1 3.1713 -0.8747 1.2688 38 1 1.6113 -1.8584 1.2684 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882263444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:40:01 Heat of formation + Delta-G solvation = -184.091656 kcal Electronic energy + Delta-G solvation = -29101.789922 eV Core-core repulsion = 24481.806067 eV Total energy + Delta-G solvation = -4619.983854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.072 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.79117 -48.47892 -42.17297 -40.42909 -38.95170 -38.46792 -37.69723 -37.38682 -34.34811 -31.88079 -30.81106 -30.54085 -29.22013 -27.45673 -24.57723 -23.73143 -23.62561 -22.05117 -21.29622 -20.11209 -19.28902 -19.24446 -18.87967 -18.19383 -17.96129 -17.57031 -17.07281 -16.88400 -16.61263 -16.42360 -15.99089 -15.67440 -15.29401 -15.23306 -15.17675 -15.13184 -14.71773 -14.64879 -14.41068 -14.31727 -13.96211 -13.86865 -13.52001 -13.45286 -13.40363 -13.09321 -13.00981 -13.00076 -12.77650 -12.57599 -12.42462 -12.38302 -12.07957 -11.69703 -11.37357 -10.87233 -10.82751 -10.01286 -9.25450 -8.51381 -6.20658 -1.18682 0.10433 0.45944 0.90795 1.38433 1.45049 1.56006 1.80487 1.92287 2.14548 2.31812 2.55123 2.78321 2.88787 2.98369 3.04995 3.24882 3.32763 3.47947 3.73149 3.84028 4.05345 4.09045 4.11047 4.19182 4.30985 4.45027 4.47766 4.52131 4.63967 4.68816 4.73276 4.97089 5.00986 5.05331 5.16735 5.44217 5.48730 5.88077 5.93948 6.92985 7.64816 8.70672 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.010741 B = 0.004008 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.116205 B = 6983.520968 C = 8853.693876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.134 4.134 3 C -0.624 4.624 4 S 2.621 3.379 5 O -0.958 6.958 6 O -0.944 6.944 7 O -0.663 6.663 8 C 0.095 3.905 9 C -0.170 4.170 10 C -0.046 4.046 11 C -0.215 4.215 12 C 0.135 3.865 13 O -0.217 6.217 14 C -0.415 4.415 15 H 0.113 0.887 16 C -0.018 4.018 17 N -0.915 5.915 18 Si 1.018 2.982 19 H -0.245 1.245 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.214 4.214 23 C -0.130 4.130 24 C 0.189 3.811 25 F -0.162 7.162 26 F -0.171 7.171 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.066 0.934 30 H 0.169 0.831 31 H 0.143 0.857 32 H 0.154 0.846 33 H 0.173 0.827 34 H 0.143 0.857 35 H 0.274 0.726 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 -5.914 11.336 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.136 4.136 3 C -0.750 4.750 4 S 2.717 3.283 5 O -0.956 6.956 6 O -0.942 6.942 7 O -0.623 6.623 8 C 0.053 3.947 9 C -0.191 4.191 10 C -0.064 4.064 11 C -0.235 4.235 12 C 0.083 3.917 13 O -0.123 6.123 14 C -0.491 4.491 15 H 0.131 0.869 16 C -0.217 4.217 17 N -0.552 5.552 18 Si 0.837 3.163 19 H -0.168 1.168 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.235 4.235 23 C -0.167 4.167 24 C 0.151 3.849 25 F -0.142 7.142 26 F -0.152 7.152 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.085 0.915 30 H 0.187 0.813 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.190 0.810 34 H 0.160 0.840 35 H 0.083 0.917 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -9.034 -5.836 11.770 15.944 hybrid contribution 1.042 -0.301 -1.481 1.836 sum -7.991 -6.137 10.289 14.401 Atomic orbital electron populations 1.22010 0.88452 1.05617 1.05357 1.22371 0.97417 0.89273 1.04533 1.30500 1.16959 1.09609 1.17967 1.04817 0.74593 0.74028 0.74829 1.93637 1.43298 1.81571 1.77086 1.93599 1.86628 1.82758 1.31194 1.85573 1.82827 1.52311 1.41543 1.17636 0.98433 0.99194 0.79391 1.21231 0.98778 0.98969 1.00142 1.21155 0.97625 0.97279 0.90296 1.21647 0.97361 1.02072 1.02448 1.19347 0.89750 0.93592 0.89050 1.83956 1.43290 1.65713 1.19316 1.21973 1.16813 1.26241 0.84029 0.86940 1.26591 0.94782 0.96997 1.03313 1.70185 1.17284 1.34322 1.33438 0.84532 0.79323 0.77973 0.74474 1.16773 1.19587 1.19777 1.20266 1.03155 1.07799 0.92316 1.25017 1.05174 0.98032 0.88501 1.20368 0.80494 0.93378 0.90623 1.93006 1.72369 1.64880 1.83989 1.93032 1.45304 1.92796 1.84045 0.89720 0.86674 0.91538 0.81332 0.83911 0.82874 0.80981 0.83965 0.91727 0.84394 0.83268 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.99 71.98 0.65 -2.56 16 2 C -0.13 -2.93 2.48 -52.18 -0.13 -3.06 16 3 C -0.62 -15.31 5.28 71.98 0.38 -14.93 16 4 S 2.62 73.50 3.95 -56.49 -0.22 73.27 16 5 O -0.96 -29.83 14.11 -118.57 -1.67 -31.51 16 6 O -0.94 -28.54 18.09 -118.57 -2.15 -30.68 16 7 O -0.66 -20.63 10.05 -61.49 -0.62 -21.25 16 8 C 0.09 3.26 4.79 22.49 0.11 3.37 16 9 C -0.17 -5.33 9.05 22.40 0.20 -5.13 16 10 C -0.05 -1.37 10.03 22.24 0.22 -1.15 16 11 C -0.22 -8.13 9.17 22.41 0.21 -7.92 16 12 C 0.13 6.03 6.64 22.56 0.15 6.18 16 13 O -0.22 -11.92 9.76 -22.74 -0.22 -12.14 16 14 C -0.42 -22.08 9.49 67.92 0.64 -21.43 16 15 H 0.11 5.31 5.20 -2.91 -0.02 5.29 16 16 C -0.02 -0.96 5.49 84.83 0.47 -0.50 16 17 N -0.92 -53.36 13.67 21.61 0.30 -53.06 16 18 Si 1.02 39.99 29.55 68.60 2.03 42.01 16 19 H -0.24 -8.65 7.11 99.48 0.71 -7.95 16 20 H -0.27 -10.33 7.11 99.48 0.71 -9.63 16 21 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 22 C -0.21 -8.37 8.41 22.49 0.19 -8.18 16 23 C -0.13 -1.97 9.80 30.62 0.30 -1.67 16 24 C 0.19 4.48 5.14 30.62 0.16 4.64 16 25 F -0.16 -4.04 17.14 44.97 0.77 -3.26 16 26 F -0.17 -5.08 17.14 44.97 0.77 -4.31 16 27 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 1.59 7.90 -2.39 -0.02 1.57 16 29 H 0.07 1.46 4.58 -5.38 -0.02 1.43 16 30 H 0.17 3.24 7.90 -2.39 -0.02 3.22 16 31 H 0.14 3.98 6.63 -2.39 -0.02 3.96 16 32 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 33 H 0.17 3.60 8.06 -2.91 -0.02 3.58 16 34 H 0.14 5.21 5.63 -2.91 -0.02 5.19 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.14 5.09 7.52 -2.91 -0.02 5.06 16 37 H 0.15 1.68 8.05 -2.39 -0.02 1.66 16 38 H 0.17 1.40 8.05 -2.39 -0.02 1.38 16 Total: -1.00 -72.29 343.57 3.64 -68.65 By element: Atomic # 1 Polarization: 23.52 SS G_CDS: 1.11 Total: 24.63 kcal Atomic # 6 Polarization: -55.89 SS G_CDS: 3.54 Total: -52.35 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.30 Total: -53.06 kcal Atomic # 8 Polarization: -90.93 SS G_CDS: -4.66 Total: -95.58 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 1.54 Total: -7.57 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.01 kcal Atomic # 16 Polarization: 73.50 SS G_CDS: -0.22 Total: 73.27 kcal Total: -72.29 3.64 -68.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882263444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.444 kcal (2) G-P(sol) polarization free energy of solvation -72.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds