Wall clock time and date at job start Wed Apr 1 2020 06:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 O 1.42903 * 109.46698 * 120.00177 * 2 1 3 5 5 C 1.53002 * 109.46975 * 239.99991 * 2 1 3 6 6 H 1.09000 * 109.47312 * 65.00193 * 5 2 1 7 7 N 1.46506 * 109.47035 * 305.00019 * 5 2 1 8 8 S 1.65599 * 119.99913 * 95.00258 * 7 5 2 9 9 O 1.42098 * 106.40463 * 178.53804 * 8 7 5 10 10 O 1.42103 * 106.40366 * 311.46058 * 8 7 5 11 11 C 1.76202 * 107.21612 * 64.99628 * 8 7 5 12 12 C 1.33387 * 125.20168 * 90.00364 * 11 8 7 13 13 C 1.38420 * 114.92463 * 179.97438 * 12 11 8 14 14 C 1.33391 * 114.91961 * 0.02562 * 13 12 11 15 15 S 1.75885 * 109.59348 * 359.75282 * 14 13 12 16 16 C 1.50701 * 109.47097 * 185.00291 * 5 2 1 17 17 O 1.21280 * 120.00159 * 119.99348 * 16 5 2 18 18 N 1.34776 * 119.99804 * 300.00079 * 16 5 2 19 19 C 1.46500 * 119.99873 * 179.97438 * 18 16 5 20 20 C 1.50696 * 109.47188 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00316 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00500 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99774 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47363 * 89.99570 * 24 22 20 26 26 H 1.48498 * 109.46893 * 209.99578 * 24 22 20 27 27 H 1.48497 * 109.47080 * 329.99870 * 24 22 20 28 28 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47239 * 300.00243 * 1 2 3 30 30 H 1.09008 * 109.46996 * 59.99954 * 1 2 3 31 31 H 0.96703 * 114.00208 * 60.00204 * 4 2 1 32 32 H 0.96992 * 120.00053 * 275.00239 * 7 5 2 33 33 H 1.07998 * 122.54136 * 359.95521 * 12 11 8 34 34 H 1.08000 * 122.54383 * 180.02562 * 13 12 11 35 35 H 1.08003 * 125.20816 * 180.02562 * 14 13 12 36 36 H 0.96993 * 120.00049 * 359.97438 * 18 16 5 37 37 H 1.08996 * 109.47738 * 300.00299 * 19 18 16 38 38 H 1.09001 * 109.47049 * 59.99949 * 19 18 16 39 39 H 0.96998 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.7517 -0.1583 -2.1370 7 7 1.4558 -2.0634 -1.3109 8 16 0.0841 -2.3293 -2.1998 9 8 -0.2046 -3.7160 -2.0871 10 8 -0.8364 -1.3113 -1.8314 11 6 0.4936 -2.0420 -3.8893 12 6 0.9477 -2.9653 -4.7381 13 6 1.2013 -2.5057 -6.0190 14 6 0.9536 -1.2091 -6.2102 15 16 0.3596 -0.4955 -4.7163 16 6 3.5419 -0.8295 -1.1889 17 8 4.0721 -1.9202 -1.1966 18 7 4.2959 0.2859 -1.1263 19 6 5.7559 0.1807 -1.0670 20 6 6.3569 1.5612 -1.0043 21 1 5.7154 2.4301 -1.0077 22 6 7.7256 1.7151 -0.9414 23 7 8.2501 2.9198 -0.8861 24 14 8.8351 0.2123 -0.9347 25 1 9.1890 -0.1480 -2.3312 26 1 10.0732 0.5145 -0.1725 27 1 8.1250 -0.9244 -0.2951 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7209 -1.5953 1.2329 32 1 1.8724 -2.7962 -0.8312 33 1 1.1060 -3.9935 -4.4480 34 1 1.5717 -3.1483 -6.8040 35 1 1.0920 -0.6793 -7.1412 36 1 3.8719 1.1582 -1.1204 37 1 6.0440 -0.3821 -0.1792 38 1 6.1195 -0.3334 -1.9568 39 1 9.2130 3.0281 -0.8422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156060266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:01 Heat of formation + Delta-G solvation = -113.432660 kcal Electronic energy + Delta-G solvation = -27084.967960 eV Core-core repulsion = 23054.181247 eV Total energy + Delta-G solvation = -4030.786713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90180 -38.20051 -37.69732 -37.15861 -36.16553 -34.75266 -34.18350 -32.44484 -30.60143 -30.23859 -28.70387 -26.57197 -24.77732 -22.45523 -21.81251 -20.82738 -20.12501 -19.49714 -19.00424 -18.06485 -17.57055 -17.07341 -16.52098 -16.30992 -15.76410 -15.43373 -15.29658 -15.02770 -14.75535 -14.42473 -13.92264 -13.64322 -13.41221 -13.29479 -13.01093 -12.88438 -12.68729 -12.55723 -12.46713 -12.33176 -12.13251 -11.93032 -11.82601 -11.61627 -11.26091 -11.08454 -10.90840 -10.81785 -10.48638 -10.04145 -9.93285 -9.68233 -9.54007 -9.18006 -8.89469 -8.82509 -8.26400 -6.25012 -4.27550 -0.03236 0.26280 1.08713 1.42745 2.13024 2.65187 2.96270 3.23176 3.30430 3.38427 3.41084 3.75185 4.20871 4.29639 4.34227 4.53911 4.54868 4.68015 4.89697 4.93824 5.01826 5.10412 5.13563 5.29488 5.44509 5.51233 5.63867 5.84672 5.90010 6.04906 6.36180 6.66257 6.73741 7.00893 7.08812 7.32201 7.58369 8.03174 8.41171 8.65767 8.78342 9.34464 10.86833 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003729 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.530566 B = 7506.844533 C = 8516.305101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 H 0.117 0.883 4 O -0.547 6.547 5 C 0.100 3.900 6 H 0.110 0.890 7 N -1.092 6.092 8 S 2.716 3.284 9 O -0.951 6.951 10 O -0.939 6.939 11 C -0.799 4.799 12 C 0.014 3.986 13 C -0.164 4.164 14 C -0.169 4.169 15 S 0.213 5.787 16 C 0.509 3.491 17 O -0.547 6.547 18 N -0.695 5.695 19 C 0.222 3.778 20 C -0.544 4.544 21 H 0.081 0.919 22 C 0.079 3.921 23 N -0.891 5.891 24 Si 0.876 3.124 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.261 1.261 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.372 0.628 32 H 0.429 0.571 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.397 0.603 37 H 0.028 0.972 38 H 0.021 0.979 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 -8.068 -7.934 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.032 3.968 3 H 0.135 0.865 4 O -0.352 6.352 5 C -0.012 4.012 6 H 0.127 0.873 7 N -0.853 5.853 8 S 2.802 3.198 9 O -0.941 6.941 10 O -0.929 6.929 11 C -1.000 5.000 12 C -0.022 4.022 13 C -0.195 4.195 14 C -0.307 4.307 15 S 0.478 5.522 16 C 0.291 3.709 17 O -0.425 6.425 18 N -0.343 5.343 19 C 0.100 3.900 20 C -0.582 4.582 21 H 0.099 0.901 22 C -0.125 4.125 23 N -0.528 5.528 24 Si 0.702 3.298 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.185 1.185 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.267 0.733 33 H 0.173 0.827 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.231 0.769 37 H 0.046 0.954 38 H 0.039 0.961 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.372 -6.763 -7.190 21.742 hybrid contribution 1.487 -2.274 -1.264 2.996 sum -17.885 -9.036 -8.454 21.749 Atomic orbital electron populations 1.22831 0.93772 1.04017 1.03440 1.22405 0.94699 0.96516 0.83186 0.86539 1.86668 1.77012 1.28844 1.42633 1.21639 0.93967 0.83833 1.01787 0.87255 1.55287 1.48243 1.16694 1.65104 1.01391 0.72926 0.73656 0.71865 1.93608 1.82703 1.31964 1.85845 1.93734 1.59870 1.58993 1.80267 1.35894 1.28100 1.06197 1.29831 1.20080 0.90337 0.99948 0.91817 1.20457 1.05232 0.95682 0.98118 1.26287 1.02589 0.98931 1.02897 1.84210 1.60760 1.06340 1.00900 1.20052 0.87766 0.85468 0.77639 1.90647 1.73592 1.27092 1.51188 1.46089 1.09226 1.07516 1.71446 1.19531 0.75177 0.98461 0.96862 1.21062 0.92811 0.91000 1.53310 0.90142 1.24778 0.97834 0.96051 0.93847 1.69873 1.12318 1.21463 1.49147 0.86833 0.80470 0.83591 0.78867 1.19938 1.20854 1.18507 0.91508 0.91857 0.89642 0.78095 0.73349 0.82735 0.83138 0.80760 0.76913 0.95397 0.96133 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.94 7.68 37.16 0.29 -1.66 16 2 C 0.09 1.10 3.37 -26.73 -0.09 1.01 16 3 H 0.12 1.30 7.71 -51.93 -0.40 0.90 16 4 O -0.55 -7.36 12.82 -35.23 -0.45 -7.82 16 5 C 0.10 1.25 2.67 -69.08 -0.18 1.06 16 6 H 0.11 1.14 7.62 -51.93 -0.40 0.75 16 7 N -1.09 -12.37 4.33 -5.88 -0.03 -12.40 16 8 S 2.72 30.49 5.49 -107.50 -0.59 29.90 16 9 O -0.95 -12.86 17.80 -57.17 -1.02 -13.88 16 10 O -0.94 -11.07 12.57 -57.17 -0.72 -11.79 16 11 C -0.80 -8.66 6.40 29.04 0.19 -8.47 16 12 C 0.01 0.14 9.84 -41.21 -0.41 -0.27 16 13 C -0.16 -1.41 10.18 -41.21 -0.42 -1.83 16 14 C -0.17 -1.37 11.23 29.04 0.33 -1.05 16 15 S 0.21 2.01 22.99 -107.50 -2.47 -0.46 16 16 C 0.51 8.83 6.74 -10.99 -0.07 8.76 16 17 O -0.55 -11.21 15.99 5.56 0.09 -11.12 16 18 N -0.69 -13.19 5.45 -61.48 -0.34 -13.53 16 19 C 0.22 5.25 4.50 -5.20 -0.02 5.23 16 20 C -0.54 -14.47 9.83 -34.44 -0.34 -14.80 16 21 H 0.08 2.22 7.84 -52.48 -0.41 1.80 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -25.95 13.96 55.43 0.77 -25.17 16 24 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 25 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 28 H 0.07 0.71 5.45 -51.93 -0.28 0.43 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 0.88 6.98 -51.92 -0.36 0.52 16 31 H 0.37 3.93 8.64 45.56 0.39 4.33 16 32 H 0.43 4.72 8.20 -34.47 -0.28 4.44 16 33 H 0.16 1.36 8.05 -52.49 -0.42 0.93 16 34 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 35 H 0.18 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.40 6.55 7.84 -40.82 -0.32 6.23 16 37 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 38 H 0.02 0.51 7.57 -51.93 -0.39 0.11 16 39 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -35.14 353.19 -8.62 -43.76 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -3.69 Total: 10.74 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -0.84 Total: -9.93 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.41 Total: -51.10 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -2.10 Total: -44.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 32.50 SS G_CDS: -3.06 Total: 29.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.14 -8.62 -43.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.676 kcal (2) G-P(sol) polarization free energy of solvation -35.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds