Wall clock time and date at job start Wed Apr 1 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47507 * 2 1 4 4 O 1.42903 * 109.46698 * 120.00177 * 2 1 3 5 5 C 1.53002 * 109.46975 * 239.99991 * 2 1 3 6 6 H 1.09000 * 109.47312 * 65.00193 * 5 2 1 7 7 N 1.46506 * 109.47035 * 305.00019 * 5 2 1 8 8 S 1.65599 * 119.99913 * 95.00258 * 7 5 2 9 9 O 1.42098 * 106.40463 * 178.53804 * 8 7 5 10 10 O 1.42103 * 106.40366 * 311.46058 * 8 7 5 11 11 C 1.76202 * 107.21612 * 64.99628 * 8 7 5 12 12 C 1.33387 * 125.20168 * 90.00364 * 11 8 7 13 13 C 1.38420 * 114.92463 * 179.97438 * 12 11 8 14 14 C 1.33391 * 114.91961 * 0.02562 * 13 12 11 15 15 S 1.75885 * 109.59348 * 359.75282 * 14 13 12 16 16 C 1.50701 * 109.47097 * 185.00291 * 5 2 1 17 17 O 1.21280 * 120.00159 * 119.99348 * 16 5 2 18 18 N 1.34776 * 119.99804 * 300.00079 * 16 5 2 19 19 C 1.46500 * 119.99873 * 179.97438 * 18 16 5 20 20 C 1.50696 * 109.47188 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00087 * 0.02562 * 20 19 18 22 22 C 1.37880 * 120.00316 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00500 * 180.02562 * 22 20 19 24 24 Si 1.86803 * 119.99774 * 0.02562 * 22 20 19 25 25 H 1.48505 * 109.47363 * 89.99570 * 24 22 20 26 26 H 1.48498 * 109.46893 * 209.99578 * 24 22 20 27 27 H 1.48497 * 109.47080 * 329.99870 * 24 22 20 28 28 H 1.08996 * 109.47226 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47239 * 300.00243 * 1 2 3 30 30 H 1.09008 * 109.46996 * 59.99954 * 1 2 3 31 31 H 0.96703 * 114.00208 * 60.00204 * 4 2 1 32 32 H 0.96992 * 120.00053 * 275.00239 * 7 5 2 33 33 H 1.07998 * 122.54136 * 359.95521 * 12 11 8 34 34 H 1.08000 * 122.54383 * 180.02562 * 13 12 11 35 35 H 1.08003 * 125.20816 * 180.02562 * 14 13 12 36 36 H 0.96993 * 120.00049 * 359.97438 * 18 16 5 37 37 H 1.08996 * 109.47738 * 300.00299 * 19 18 16 38 38 H 1.09001 * 109.47049 * 59.99949 * 19 18 16 39 39 H 0.96998 * 120.00084 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.0400 -0.7213 -1.2493 6 1 1.7517 -0.1583 -2.1370 7 7 1.4558 -2.0634 -1.3109 8 16 0.0841 -2.3293 -2.1998 9 8 -0.2046 -3.7160 -2.0871 10 8 -0.8364 -1.3113 -1.8314 11 6 0.4936 -2.0420 -3.8893 12 6 0.9477 -2.9653 -4.7381 13 6 1.2013 -2.5057 -6.0190 14 6 0.9536 -1.2091 -6.2102 15 16 0.3596 -0.4955 -4.7163 16 6 3.5419 -0.8295 -1.1889 17 8 4.0721 -1.9202 -1.1966 18 7 4.2959 0.2859 -1.1263 19 6 5.7559 0.1807 -1.0670 20 6 6.3569 1.5612 -1.0043 21 1 5.7154 2.4301 -1.0077 22 6 7.7256 1.7151 -0.9414 23 7 8.2501 2.9198 -0.8861 24 14 8.8351 0.2123 -0.9347 25 1 9.1890 -0.1480 -2.3312 26 1 10.0732 0.5145 -0.1725 27 1 8.1250 -0.9244 -0.2951 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.7209 -1.5953 1.2329 32 1 1.8724 -2.7962 -0.8312 33 1 1.1060 -3.9935 -4.4480 34 1 1.5717 -3.1483 -6.8040 35 1 1.0920 -0.6793 -7.1412 36 1 3.8719 1.1582 -1.1204 37 1 6.0440 -0.3821 -0.1792 38 1 6.1195 -0.3334 -1.9568 39 1 9.2130 3.0281 -0.8422 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156060266.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:00 Heat of formation + Delta-G solvation = -144.176805 kcal Electronic energy + Delta-G solvation = -27086.301126 eV Core-core repulsion = 23054.181247 eV Total energy + Delta-G solvation = -4032.119879 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19882 -38.99629 -38.72067 -38.17467 -37.11822 -36.29890 -35.40078 -34.42294 -31.59550 -30.94782 -30.34200 -27.92118 -25.47887 -24.16000 -23.01527 -21.63156 -21.53726 -20.28479 -19.93025 -19.34559 -18.74311 -18.19336 -18.05895 -17.12858 -16.89384 -16.79755 -16.45744 -16.19521 -15.99214 -15.73883 -15.23062 -14.95713 -14.47978 -14.29872 -14.24467 -13.95289 -13.79319 -13.68360 -13.60674 -13.42986 -13.38657 -13.06468 -12.84222 -12.79173 -12.69682 -12.51090 -11.99184 -11.93415 -11.78782 -11.63422 -11.40999 -11.16669 -10.90029 -10.45561 -10.36062 -9.94764 -9.60030 -8.37739 -6.44230 -0.86940 -0.50523 0.35942 0.75637 1.33033 1.36411 1.43263 1.47970 1.58393 1.74221 2.28998 2.36493 2.55909 2.97916 3.28291 3.36802 3.53603 3.62095 3.88225 3.98138 4.11497 4.28704 4.31719 4.36589 4.53546 4.80343 4.80672 4.99653 5.00962 5.04885 5.16411 5.25014 5.27553 5.46875 5.52969 5.75012 6.08898 6.56434 6.69708 6.78381 7.15480 7.32446 8.76833 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003729 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.530566 B = 7506.844533 C = 8516.305101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 H 0.124 0.876 4 O -0.567 6.567 5 C 0.112 3.888 6 H 0.133 0.867 7 N -1.090 6.090 8 S 2.734 3.266 9 O -0.975 6.975 10 O -0.945 6.945 11 C -0.823 4.823 12 C 0.006 3.994 13 C -0.175 4.175 14 C -0.159 4.159 15 S 0.203 5.797 16 C 0.510 3.490 17 O -0.577 6.577 18 N -0.697 5.697 19 C 0.233 3.767 20 C -0.544 4.544 21 H 0.062 0.938 22 C 0.028 3.972 23 N -0.931 5.931 24 Si 0.934 3.066 25 H -0.264 1.264 26 H -0.276 1.276 27 H -0.261 1.261 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.091 0.909 31 H 0.382 0.618 32 H 0.430 0.570 33 H 0.161 0.839 34 H 0.176 0.824 35 H 0.205 0.795 36 H 0.409 0.591 37 H 0.013 0.987 38 H 0.015 0.985 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.594 -8.669 -9.097 23.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.032 3.968 3 H 0.142 0.858 4 O -0.373 6.373 5 C 0.000 4.000 6 H 0.151 0.849 7 N -0.851 5.851 8 S 2.822 3.178 9 O -0.966 6.966 10 O -0.935 6.935 11 C -1.025 5.025 12 C -0.030 4.030 13 C -0.205 4.205 14 C -0.297 4.297 15 S 0.468 5.532 16 C 0.294 3.706 17 O -0.457 6.457 18 N -0.346 5.346 19 C 0.110 3.890 20 C -0.582 4.582 21 H 0.080 0.920 22 C -0.172 4.172 23 N -0.569 5.569 24 Si 0.758 3.242 25 H -0.189 1.189 26 H -0.201 1.201 27 H -0.185 1.185 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.110 0.890 31 H 0.231 0.769 32 H 0.268 0.732 33 H 0.179 0.821 34 H 0.193 0.807 35 H 0.222 0.778 36 H 0.245 0.755 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.125 -7.369 -8.337 22.996 hybrid contribution 1.647 -2.065 -0.966 2.812 sum -18.478 -9.434 -9.303 22.737 Atomic orbital electron populations 1.22801 0.92565 1.04200 1.04081 1.22522 0.95538 0.96551 0.82160 0.85837 1.86637 1.77490 1.29886 1.43332 1.21575 0.90121 0.84834 1.03441 0.84911 1.55257 1.48117 1.16314 1.65405 1.00682 0.72488 0.72831 0.71797 1.93575 1.83114 1.33441 1.86427 1.93716 1.60145 1.58915 1.80692 1.35752 1.29902 1.07321 1.29548 1.20408 0.89748 1.00305 0.92547 1.20753 1.05345 0.96330 0.98110 1.26715 1.00891 0.98841 1.03229 1.84204 1.61164 1.05874 1.01914 1.20757 0.89607 0.84262 0.75933 1.90631 1.74781 1.28151 1.52183 1.45911 1.07596 1.08936 1.72167 1.19113 0.77940 0.96231 0.95756 1.21281 0.92839 0.91821 1.52252 0.91983 1.25553 0.99438 0.98531 0.93703 1.69976 1.12896 1.23405 1.50664 0.85908 0.78765 0.80190 0.79315 1.18939 1.20126 1.18512 0.91569 0.91184 0.89025 0.76888 0.73198 0.82148 0.80714 0.77798 0.75507 0.96958 0.96726 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 7.68 71.98 0.55 -2.93 16 2 C 0.09 2.07 3.37 30.60 0.10 2.17 16 3 H 0.12 2.55 7.71 -2.39 -0.02 2.53 16 4 O -0.57 -14.66 12.82 -148.98 -1.91 -16.57 16 5 C 0.11 2.66 2.67 44.25 0.12 2.77 16 6 H 0.13 2.53 7.62 -2.39 -0.02 2.51 16 7 N -1.09 -23.58 4.33 -172.51 -0.75 -24.33 16 8 S 2.73 58.62 5.49 -56.49 -0.31 58.31 16 9 O -0.98 -25.83 17.80 -128.00 -2.28 -28.11 16 10 O -0.94 -20.98 12.57 -128.00 -1.61 -22.59 16 11 C -0.82 -16.69 6.40 66.72 0.43 -16.26 16 12 C 0.01 0.11 9.84 21.21 0.21 0.32 16 13 C -0.18 -2.58 10.18 21.22 0.22 -2.36 16 14 C -0.16 -2.14 11.23 66.72 0.75 -1.39 16 15 S 0.20 3.47 22.99 -56.49 -1.30 2.17 16 16 C 0.51 17.23 6.74 87.66 0.59 17.82 16 17 O -0.58 -23.31 15.99 -3.03 -0.05 -23.36 16 18 N -0.70 -25.98 5.45 -466.80 -2.54 -28.53 16 19 C 0.23 10.97 4.50 85.63 0.38 11.36 16 20 C -0.54 -29.04 9.83 25.60 0.25 -28.79 16 21 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 22 C 0.03 1.55 5.47 84.66 0.46 2.02 16 23 N -0.93 -54.54 13.96 21.45 0.30 -54.24 16 24 Si 0.93 43.13 27.47 68.60 1.88 45.02 16 25 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 27 H -0.26 -11.96 6.54 99.48 0.65 -11.30 16 28 H 0.07 1.30 5.45 -2.39 -0.01 1.29 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.09 1.69 6.98 -2.38 -0.02 1.67 16 31 H 0.38 7.75 8.64 -74.06 -0.64 7.11 16 32 H 0.43 9.21 8.20 -96.76 -0.79 8.41 16 33 H 0.16 2.65 8.05 -2.91 -0.02 2.63 16 34 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 35 H 0.21 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.41 13.18 7.84 -92.71 -0.73 12.46 16 37 H 0.01 0.63 7.20 -2.39 -0.02 0.61 16 38 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 39 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -74.22 353.19 -5.58 -79.80 By element: Atomic # 1 Polarization: 28.79 SS G_CDS: -1.08 Total: 27.71 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.07 Total: -15.28 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -2.99 Total: -107.10 kcal Atomic # 8 Polarization: -84.78 SS G_CDS: -5.84 Total: -90.63 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.02 kcal Atomic # 16 Polarization: 62.09 SS G_CDS: -1.61 Total: 60.48 kcal Total: -74.22 -5.58 -79.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060266.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.378 kcal (2) G-P(sol) polarization free energy of solvation -74.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds