Wall clock time and date at job start Wed Apr 1 2020 06:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 O 1.42896 * 109.47116 * 240.00036 * 2 1 3 5 5 C 1.53001 * 109.47097 * 119.99886 * 2 1 3 6 6 H 1.09004 * 109.46736 * 65.77666 * 5 2 1 7 7 N 1.46500 * 109.47243 * 305.77684 * 5 2 1 8 8 S 1.65593 * 120.00043 * 119.84073 * 7 5 2 9 9 O 1.42100 * 106.40376 * 309.22649 * 8 7 5 10 10 O 1.42100 * 106.40054 * 176.30413 * 8 7 5 11 11 C 1.76206 * 107.21839 * 62.76857 * 8 7 5 12 12 C 1.33387 * 125.20273 * 89.99113 * 11 8 7 13 13 C 1.38428 * 114.91788 * 179.97438 * 12 11 8 14 14 C 1.33394 * 114.91982 * 0.02562 * 13 12 11 15 15 S 1.75883 * 125.19824 * 269.97671 * 11 8 7 16 16 C 1.50696 * 109.46894 * 185.77370 * 5 2 1 17 17 O 1.21288 * 119.99783 * 120.00150 * 16 5 2 18 18 N 1.34775 * 120.00356 * 300.00012 * 16 5 2 19 19 C 1.46503 * 120.00359 * 180.02562 * 18 16 5 20 20 C 1.50695 * 109.47469 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99713 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99933 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00326 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47073 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46616 * 120.00265 * 24 22 20 27 27 H 1.48498 * 109.47044 * 240.00369 * 24 22 20 28 28 H 1.09003 * 109.47283 * 304.15983 * 1 2 3 29 29 H 1.09005 * 109.47184 * 64.16162 * 1 2 3 30 30 H 1.08993 * 109.47188 * 184.15785 * 1 2 3 31 31 H 0.96704 * 114.00053 * 300.00051 * 4 2 1 32 32 H 0.97003 * 119.99658 * 299.84278 * 7 5 2 33 33 H 1.07994 * 122.53981 * 0.25740 * 12 11 8 34 34 H 1.07995 * 122.53892 * 180.02562 * 13 12 11 35 35 H 1.07994 * 125.19855 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00242 * 0.02562 * 18 16 5 37 37 H 1.09004 * 109.46911 * 300.00322 * 19 18 16 38 38 H 1.09002 * 109.47025 * 59.99537 * 19 18 16 39 39 H 0.97000 * 120.00644 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7635 -1.7744 1.1990 7 7 1.4414 -0.1156 2.4414 8 16 0.5070 -1.0324 3.4556 9 8 -0.4516 -1.6868 2.6359 10 8 0.1535 -0.1914 4.5451 11 6 1.5412 -2.2961 4.1177 12 6 2.2564 -2.1954 5.2391 13 6 2.9956 -3.3203 5.5624 14 6 2.8809 -4.3342 4.7032 15 16 1.7879 -3.8832 3.4011 16 6 3.5401 -0.5986 1.3228 17 8 4.0584 -0.0584 2.2771 18 7 4.3060 -1.0892 0.3281 19 6 5.7644 -0.9705 0.3999 20 6 6.3801 -1.5940 -0.8261 21 1 5.7482 -2.0350 -1.5829 22 6 7.7500 -1.6015 -0.9817 23 7 8.5194 -1.0649 -0.0600 24 14 8.5132 -2.3737 -2.5018 25 1 7.4393 -2.9033 -3.3803 26 1 9.2943 -1.3481 -3.2389 27 1 9.4125 -3.4832 -2.0950 28 1 -0.3634 0.5770 0.8504 29 1 -0.3634 0.4479 -0.9250 30 1 -0.3633 -1.0249 0.0745 31 1 1.7209 -1.5952 -1.2329 32 1 1.5925 0.8225 2.6366 33 1 2.2552 -1.3054 5.8509 34 1 3.6178 -3.3730 6.4435 35 1 3.3819 -5.2866 4.7939 36 1 3.8915 -1.5209 -0.4352 37 1 6.0412 0.0826 0.4504 38 1 6.1274 -1.4846 1.2898 39 1 9.4832 -1.0698 -0.1696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156060273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:07 Heat of formation + Delta-G solvation = -127.185377 kcal Electronic energy + Delta-G solvation = -27148.145213 eV Core-core repulsion = 23116.762138 eV Total energy + Delta-G solvation = -4031.383075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.71128 -38.00551 -37.42062 -37.18899 -36.05027 -35.02798 -34.01786 -32.33084 -30.43584 -30.05659 -28.24281 -26.23320 -24.60580 -22.77429 -21.94814 -20.67562 -19.98971 -19.41489 -18.87508 -17.91419 -17.57894 -16.89683 -16.15690 -16.05312 -15.67595 -15.38145 -15.06435 -14.90882 -14.69057 -14.41668 -13.91220 -13.43565 -13.23787 -13.10908 -12.87347 -12.68895 -12.66773 -12.32030 -12.23184 -12.18586 -11.99032 -11.95605 -11.78544 -11.67609 -11.18767 -11.02885 -10.96906 -10.92209 -10.68671 -10.33512 -10.03863 -9.50888 -9.39247 -8.91045 -8.75848 -8.71160 -7.91561 -6.18606 -4.24878 0.11004 0.42791 1.25774 1.59518 2.31932 2.74108 3.12963 3.22257 3.29772 3.32894 3.51328 3.95911 4.17855 4.33403 4.36709 4.56787 4.64121 4.72063 4.99028 5.08052 5.12618 5.18099 5.19978 5.38301 5.56718 5.62741 5.68238 5.82064 5.93633 6.08583 6.10531 6.74279 7.25870 7.38499 7.47596 7.50414 7.65415 7.94471 8.58227 8.73752 9.02609 9.41551 10.91692 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.003926 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.796071 B = 7129.501029 C = 8365.428412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.104 3.896 3 H 0.110 0.890 4 O -0.545 6.545 5 C 0.103 3.897 6 H 0.106 0.894 7 N -1.083 6.083 8 S 2.724 3.276 9 O -0.949 6.949 10 O -0.952 6.952 11 C -0.798 4.798 12 C 0.021 3.979 13 C -0.163 4.163 14 C -0.165 4.165 15 S 0.204 5.796 16 C 0.487 3.513 17 O -0.546 6.546 18 N -0.695 5.695 19 C 0.250 3.750 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.063 3.937 23 N -0.887 5.887 24 Si 0.903 3.097 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.283 1.283 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.376 0.624 32 H 0.427 0.573 33 H 0.155 0.845 34 H 0.151 0.849 35 H 0.174 0.826 36 H 0.396 0.604 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.713 -4.539 6.259 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.043 3.957 3 H 0.128 0.872 4 O -0.349 6.349 5 C -0.010 4.010 6 H 0.124 0.876 7 N -0.844 5.844 8 S 2.809 3.191 9 O -0.939 6.939 10 O -0.942 6.942 11 C -0.999 4.999 12 C -0.015 4.015 13 C -0.193 4.193 14 C -0.303 4.303 15 S 0.469 5.531 16 C 0.269 3.731 17 O -0.425 6.425 18 N -0.345 5.345 19 C 0.129 3.871 20 C -0.578 4.578 21 H 0.083 0.917 22 C -0.140 4.140 23 N -0.525 5.525 24 Si 0.730 3.270 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.209 1.209 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.224 0.776 32 H 0.263 0.737 33 H 0.172 0.828 34 H 0.169 0.831 35 H 0.192 0.808 36 H 0.232 0.768 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.292 -4.384 5.667 18.717 hybrid contribution 1.624 -0.471 0.616 1.799 sum -15.668 -4.855 6.283 17.565 Atomic orbital electron populations 1.22519 0.94955 1.03920 1.02887 1.22105 0.93874 0.97287 0.82475 0.87185 1.86731 1.76732 1.29250 1.42174 1.21629 0.93521 0.98911 0.86914 0.87596 1.55095 1.69681 1.23585 1.36040 1.01128 0.72615 0.72593 0.72736 1.93610 1.55975 1.76100 1.68229 1.93599 1.81486 1.65783 1.53350 1.35774 1.29276 1.20207 1.14641 1.20041 0.89641 0.99123 0.92683 1.20444 1.03228 0.93014 1.02650 1.26232 1.01932 1.03872 0.98303 1.84071 1.40363 1.04046 1.24575 1.20442 0.88040 0.80607 0.84041 1.90667 1.74218 1.44434 1.33175 1.46518 1.09870 1.56861 1.21296 1.19124 0.72821 0.97637 0.97508 1.21255 0.92016 1.39146 1.05335 0.91694 1.24942 0.96995 0.95235 0.96838 1.69978 1.04816 1.43897 1.33777 0.86372 0.79255 0.78924 0.82427 1.19533 1.20814 1.20896 0.91552 0.91179 0.90937 0.77601 0.73652 0.82769 0.83146 0.80818 0.76839 0.95533 0.95636 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.79 8.96 37.16 0.33 -1.46 16 2 C 0.10 1.20 3.33 -26.73 -0.09 1.11 16 3 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 4 O -0.54 -6.36 11.15 -35.23 -0.39 -6.75 16 5 C 0.10 1.35 2.54 -69.08 -0.18 1.17 16 6 H 0.11 1.19 7.73 -51.93 -0.40 0.79 16 7 N -1.08 -13.31 3.95 -5.88 -0.02 -13.33 16 8 S 2.72 34.82 5.73 -107.50 -0.62 34.20 16 9 O -0.95 -12.74 17.02 -57.17 -0.97 -13.71 16 10 O -0.95 -14.06 17.80 -57.17 -1.02 -15.07 16 11 C -0.80 -10.33 6.50 29.04 0.19 -10.14 16 12 C 0.02 0.26 9.84 -41.21 -0.41 -0.15 16 13 C -0.16 -1.78 10.18 -41.20 -0.42 -2.20 16 14 C -0.17 -1.73 11.23 29.04 0.33 -1.41 16 15 S 0.20 2.37 23.22 -107.50 -2.50 -0.13 16 16 C 0.49 8.95 7.22 -10.99 -0.08 8.87 16 17 O -0.55 -12.01 16.42 5.55 0.09 -11.91 16 18 N -0.70 -13.89 5.30 -61.47 -0.33 -14.22 16 19 C 0.25 6.42 5.43 -5.19 -0.03 6.39 16 20 C -0.54 -14.29 9.28 -34.44 -0.32 -14.61 16 21 H 0.06 1.62 7.60 -52.48 -0.40 1.22 16 22 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 24 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H 0.07 0.62 7.61 -51.93 -0.39 0.22 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 31 H 0.38 2.87 9.05 45.56 0.41 3.28 16 32 H 0.43 4.77 8.95 -34.47 -0.31 4.46 16 33 H 0.15 1.69 8.05 -52.49 -0.42 1.26 16 34 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.40 6.89 6.40 -40.82 -0.26 6.63 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -35.58 364.91 -9.16 -44.74 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -3.85 Total: 10.93 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -0.77 Total: -10.79 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: 0.39 Total: -52.53 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.29 Total: -47.45 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 37.19 SS G_CDS: -3.11 Total: 34.07 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -35.58 -9.16 -44.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.443 kcal (2) G-P(sol) polarization free energy of solvation -35.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds