Wall clock time and date at job start Wed Apr 1 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47386 * 2 1 4 4 O 1.42896 * 109.47116 * 240.00036 * 2 1 3 5 5 C 1.53001 * 109.47097 * 119.99886 * 2 1 3 6 6 H 1.09004 * 109.46736 * 65.77666 * 5 2 1 7 7 N 1.46500 * 109.47243 * 305.77684 * 5 2 1 8 8 S 1.65593 * 120.00043 * 119.84073 * 7 5 2 9 9 O 1.42100 * 106.40376 * 309.22649 * 8 7 5 10 10 O 1.42100 * 106.40054 * 176.30413 * 8 7 5 11 11 C 1.76206 * 107.21839 * 62.76857 * 8 7 5 12 12 C 1.33387 * 125.20273 * 89.99113 * 11 8 7 13 13 C 1.38428 * 114.91788 * 179.97438 * 12 11 8 14 14 C 1.33394 * 114.91982 * 0.02562 * 13 12 11 15 15 S 1.75883 * 125.19824 * 269.97671 * 11 8 7 16 16 C 1.50696 * 109.46894 * 185.77370 * 5 2 1 17 17 O 1.21288 * 119.99783 * 120.00150 * 16 5 2 18 18 N 1.34775 * 120.00356 * 300.00012 * 16 5 2 19 19 C 1.46503 * 120.00359 * 180.02562 * 18 16 5 20 20 C 1.50695 * 109.47469 * 179.97438 * 19 18 16 21 21 H 1.08007 * 119.99713 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99933 * 179.97438 * 20 19 18 23 23 N 1.31505 * 120.00326 * 0.02562 * 22 20 19 24 24 Si 1.86808 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47073 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46616 * 120.00265 * 24 22 20 27 27 H 1.48498 * 109.47044 * 240.00369 * 24 22 20 28 28 H 1.09003 * 109.47283 * 304.15983 * 1 2 3 29 29 H 1.09005 * 109.47184 * 64.16162 * 1 2 3 30 30 H 1.08993 * 109.47188 * 184.15785 * 1 2 3 31 31 H 0.96704 * 114.00053 * 300.00051 * 4 2 1 32 32 H 0.97003 * 119.99658 * 299.84278 * 7 5 2 33 33 H 1.07994 * 122.53981 * 0.25740 * 12 11 8 34 34 H 1.07995 * 122.53892 * 180.02562 * 13 12 11 35 35 H 1.07994 * 125.19855 * 180.02562 * 14 13 12 36 36 H 0.96998 * 120.00242 * 0.02562 * 18 16 5 37 37 H 1.09004 * 109.46911 * 300.00322 * 19 18 16 38 38 H 1.09002 * 109.47025 * 59.99537 * 19 18 16 39 39 H 0.97000 * 120.00644 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 1 1.7635 -1.7744 1.1990 7 7 1.4414 -0.1156 2.4414 8 16 0.5070 -1.0324 3.4556 9 8 -0.4516 -1.6868 2.6359 10 8 0.1535 -0.1914 4.5451 11 6 1.5412 -2.2961 4.1177 12 6 2.2564 -2.1954 5.2391 13 6 2.9956 -3.3203 5.5624 14 6 2.8809 -4.3342 4.7032 15 16 1.7879 -3.8832 3.4011 16 6 3.5401 -0.5986 1.3228 17 8 4.0584 -0.0584 2.2771 18 7 4.3060 -1.0892 0.3281 19 6 5.7644 -0.9705 0.3999 20 6 6.3801 -1.5940 -0.8261 21 1 5.7482 -2.0350 -1.5829 22 6 7.7500 -1.6015 -0.9817 23 7 8.5194 -1.0649 -0.0600 24 14 8.5132 -2.3737 -2.5018 25 1 7.4393 -2.9033 -3.3803 26 1 9.2943 -1.3481 -3.2389 27 1 9.4125 -3.4832 -2.0950 28 1 -0.3634 0.5770 0.8504 29 1 -0.3634 0.4479 -0.9250 30 1 -0.3633 -1.0249 0.0745 31 1 1.7209 -1.5952 -1.2329 32 1 1.5925 0.8225 2.6366 33 1 2.2552 -1.3054 5.8509 34 1 3.6178 -3.3730 6.4435 35 1 3.3819 -5.2866 4.7939 36 1 3.8915 -1.5209 -0.4352 37 1 6.0412 0.0826 0.4504 38 1 6.1274 -1.4846 1.2898 39 1 9.4832 -1.0698 -0.1696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156060273.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:48:06 Heat of formation + Delta-G solvation = -158.128487 kcal Electronic energy + Delta-G solvation = -27149.487007 eV Core-core repulsion = 23116.762138 eV Total energy + Delta-G solvation = -4032.724869 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 348.069 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08299 -38.91661 -38.58655 -38.26375 -37.12840 -36.41210 -35.58130 -34.27793 -31.33812 -30.94576 -29.90463 -27.73776 -25.49403 -24.59765 -23.03062 -21.66346 -21.51983 -20.36628 -19.89011 -19.26855 -18.81283 -17.96831 -17.80737 -17.03251 -16.93816 -16.81462 -16.31031 -16.21063 -15.89716 -15.76500 -15.19775 -14.82102 -14.31907 -14.27127 -14.00439 -13.96294 -13.64850 -13.63112 -13.53005 -13.38510 -13.29807 -13.16030 -12.87625 -12.76949 -12.74475 -12.69206 -12.20128 -12.14596 -11.93542 -11.61104 -11.42372 -11.24974 -10.78626 -10.43856 -10.27274 -9.77260 -9.60565 -8.26624 -6.41748 -0.87878 -0.51128 0.34517 0.72614 1.42166 1.45035 1.45941 1.59252 1.65059 1.71239 2.33973 2.47795 2.60685 3.08916 3.20148 3.37046 3.54405 3.62329 3.88755 3.95820 4.15588 4.26295 4.28979 4.34290 4.53481 4.78590 4.92580 4.97661 5.08825 5.14568 5.23224 5.27761 5.35270 5.52045 5.72964 5.76524 5.88394 6.69418 6.81141 6.91622 7.26755 7.48278 8.85606 Molecular weight = 348.07amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.003926 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.796071 B = 7129.501029 C = 8365.428412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.110 3.890 3 H 0.101 0.899 4 O -0.559 6.559 5 C 0.116 3.884 6 H 0.130 0.870 7 N -1.081 6.081 8 S 2.741 3.259 9 O -0.953 6.953 10 O -0.973 6.973 11 C -0.823 4.823 12 C 0.008 3.992 13 C -0.177 4.177 14 C -0.160 4.160 15 S 0.200 5.800 16 C 0.486 3.514 17 O -0.585 6.585 18 N -0.691 5.691 19 C 0.267 3.733 20 C -0.549 4.549 21 H 0.083 0.917 22 C 0.006 3.994 23 N -0.932 5.932 24 Si 0.980 3.020 25 H -0.252 1.252 26 H -0.282 1.282 27 H -0.279 1.279 28 H 0.068 0.932 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.395 0.605 32 H 0.431 0.569 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.204 0.796 36 H 0.411 0.589 37 H -0.014 1.014 38 H -0.010 1.010 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.727 -6.112 4.870 19.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.049 3.951 3 H 0.119 0.881 4 O -0.366 6.366 5 C 0.003 3.997 6 H 0.147 0.853 7 N -0.841 5.841 8 S 2.827 3.173 9 O -0.943 6.943 10 O -0.964 6.964 11 C -1.025 5.025 12 C -0.028 4.028 13 C -0.207 4.207 14 C -0.298 4.298 15 S 0.465 5.535 16 C 0.270 3.730 17 O -0.466 6.466 18 N -0.343 5.343 19 C 0.145 3.855 20 C -0.587 4.587 21 H 0.101 0.899 22 C -0.194 4.194 23 N -0.571 5.571 24 Si 0.803 3.197 25 H -0.176 1.176 26 H -0.208 1.208 27 H -0.205 1.205 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.245 0.755 32 H 0.269 0.731 33 H 0.178 0.822 34 H 0.192 0.808 35 H 0.221 0.779 36 H 0.249 0.751 37 H 0.004 0.996 38 H 0.008 0.992 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.374 -5.967 4.260 19.782 hybrid contribution 1.947 0.008 1.134 2.253 sum -16.427 -5.959 5.394 18.288 Atomic orbital electron populations 1.22486 0.92998 1.04542 1.03737 1.22044 0.95142 0.96571 0.81371 0.88072 1.86694 1.77145 1.30874 1.41855 1.21602 0.89086 1.00786 0.88192 0.85270 1.55073 1.69264 1.23922 1.35881 1.00529 0.72380 0.72178 0.72180 1.93594 1.56389 1.76076 1.68274 1.93568 1.82035 1.66605 1.54149 1.35776 1.30228 1.20995 1.15468 1.20368 0.89673 1.00019 0.92707 1.20753 1.03500 0.92638 1.03767 1.26676 1.00982 1.04920 0.97207 1.83989 1.40883 1.03353 1.25252 1.21361 0.90258 0.78796 0.82559 1.90648 1.75659 1.45738 1.34531 1.46247 1.07732 1.57703 1.22649 1.18540 0.76234 0.94558 0.96215 1.21631 0.92610 1.38846 1.05618 0.89859 1.25991 0.97657 0.95561 1.00172 1.70131 1.05248 1.45455 1.36230 0.85180 0.78486 0.77785 0.78201 1.17556 1.20762 1.20497 0.91254 0.89920 0.90331 0.75460 0.73140 0.82228 0.80847 0.77860 0.75091 0.99614 0.99242 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.05 8.96 71.98 0.64 -2.40 16 2 C 0.11 2.36 3.33 30.59 0.10 2.46 16 3 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 4 O -0.56 -11.85 11.15 -148.98 -1.66 -13.51 16 5 C 0.12 2.91 2.54 44.24 0.11 3.03 16 6 H 0.13 2.67 7.73 -2.39 -0.02 2.65 16 7 N -1.08 -25.89 3.95 -172.52 -0.68 -26.57 16 8 S 2.74 68.11 5.73 -56.49 -0.32 67.78 16 9 O -0.95 -24.17 17.02 -128.00 -2.18 -26.35 16 10 O -0.97 -28.49 17.80 -128.00 -2.28 -30.77 16 11 C -0.82 -20.79 6.50 66.72 0.43 -20.36 16 12 C 0.01 0.20 9.84 21.22 0.21 0.41 16 13 C -0.18 -3.64 10.18 21.22 0.22 -3.43 16 14 C -0.16 -3.07 11.23 66.72 0.75 -2.32 16 15 S 0.20 4.38 23.22 -56.49 -1.31 3.07 16 16 C 0.49 17.97 7.22 87.66 0.63 18.60 16 17 O -0.58 -26.49 16.42 -3.05 -0.05 -26.54 16 18 N -0.69 -27.78 5.30 -466.78 -2.47 -30.25 16 19 C 0.27 14.22 5.43 85.63 0.46 14.68 16 20 C -0.55 -29.11 9.28 25.60 0.24 -28.87 16 21 H 0.08 4.01 7.60 -2.91 -0.02 3.99 16 22 C 0.01 0.30 5.46 84.66 0.46 0.77 16 23 N -0.93 -55.20 13.29 21.44 0.28 -54.91 16 24 Si 0.98 41.57 29.54 68.60 2.03 43.60 16 25 H -0.25 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H 0.07 1.14 7.61 -2.39 -0.02 1.13 16 29 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.08 1.26 7.85 -2.39 -0.02 1.24 16 31 H 0.39 4.90 9.05 -74.05 -0.67 4.23 16 32 H 0.43 9.57 8.95 -96.74 -0.87 8.71 16 33 H 0.16 3.52 8.05 -2.91 -0.02 3.49 16 34 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.20 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.41 13.85 6.40 -92.71 -0.59 13.26 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -77.87 364.91 -5.39 -83.25 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.00 Total: 28.63 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.26 Total: -17.44 kcal Atomic # 7 Polarization: -108.86 SS G_CDS: -2.87 Total: -111.73 kcal Atomic # 8 Polarization: -91.00 SS G_CDS: -6.17 Total: -97.17 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 72.49 SS G_CDS: -1.64 Total: 70.86 kcal Total: -77.87 -5.39 -83.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156060273.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.875 kcal (2) G-P(sol) polarization free energy of solvation -77.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds