Wall clock time and date at job start Wed Apr 1 2020 04:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99461 * 2 1 4 4 H 1.48494 * 109.46905 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46632 * 119.99631 * 3 2 1 7 7 C 1.40019 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00088 * 197.23067 * 7 2 1 9 9 C 1.41555 * 119.99610 * 17.23506 * 7 2 1 10 10 C 1.41191 * 120.98855 * 203.19707 * 9 7 2 11 11 C 1.36555 * 119.14331 * 179.97438 * 10 9 7 12 12 N 1.32098 * 121.27124 * 359.73939 * 11 10 9 13 13 C 1.32535 * 122.21332 * 0.53809 * 12 11 10 14 14 N 1.39084 * 119.65885 * 179.74344 * 13 12 11 15 15 C 1.46974 * 110.99486 * 359.72444 * 14 13 12 16 16 C 1.53411 * 109.65422 * 165.08555 * 15 14 13 17 17 N 1.46531 * 108.26643 * 49.67816 * 16 15 14 18 18 C 1.35983 * 128.72953 * 163.48871 * 17 16 15 19 19 Br 1.89099 * 126.66709 * 0.30840 * 18 17 16 20 20 C 1.35036 * 106.64503 * 180.27362 * 18 17 16 21 21 N 1.34393 * 108.09140 * 359.97438 * 20 18 17 22 22 C 1.29867 * 109.21057 * 359.91818 * 21 20 18 23 23 C 1.47324 * 111.00162 * 235.53489 * 14 13 12 24 24 C 1.38746 * 120.68680 * 359.46628 * 13 12 11 25 25 H 0.96993 * 120.00397 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.43114 * 359.95808 * 10 9 7 27 27 H 1.07996 * 119.36612 * 180.02562 * 11 10 9 28 28 H 1.08992 * 109.44314 * 45.03340 * 15 14 13 29 29 H 1.09001 * 109.44185 * 285.14338 * 15 14 13 30 30 H 1.09005 * 109.71402 * 169.37832 * 16 15 14 31 31 H 1.08998 * 109.71296 * 289.96898 * 16 15 14 32 32 H 1.08001 * 125.95511 * 180.02562 * 20 18 17 33 33 H 1.09001 * 109.73358 * 293.94012 * 23 14 13 34 34 H 1.08999 * 109.74241 * 54.59184 * 23 14 13 35 35 H 1.07994 * 120.66867 * 180.23207 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.0951 1.6965 -1.2124 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2126 7 6 2.0077 -1.2125 0.0005 8 1 3.0513 -1.2333 0.2776 9 6 1.3476 -2.4111 -0.3622 10 6 1.8281 -3.6657 0.0720 11 6 1.1616 -4.7981 -0.2998 12 7 0.0768 -4.7397 -1.0512 13 6 -0.4165 -3.5912 -1.4920 14 7 -1.5593 -3.5919 -2.2846 15 6 -2.0427 -4.9614 -2.5104 16 6 -3.4763 -4.9194 -3.0547 17 7 -3.5145 -3.9769 -4.1760 18 6 -4.4630 -3.8404 -5.1408 19 35 -6.0526 -4.8502 -5.3125 20 6 -4.0492 -2.8431 -5.9517 21 7 -2.8745 -2.3862 -5.4853 22 6 -2.5470 -3.0565 -4.4223 23 6 -1.3176 -2.8956 -3.5602 24 6 0.1922 -2.3877 -1.1661 25 1 -0.4850 0.8399 -0.0004 26 1 2.7116 -3.7291 0.6900 27 1 1.5258 -5.7596 0.0306 28 1 -2.0280 -5.5111 -1.5693 29 1 -1.3953 -5.4604 -3.2315 30 1 -3.7683 -5.9118 -3.3986 31 1 -4.1574 -4.5867 -2.2714 32 1 -4.5716 -2.4759 -6.8227 33 1 -1.1356 -1.8373 -3.3731 34 1 -0.4549 -3.3344 -4.0615 35 1 -0.2121 -1.4517 -1.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166707824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:38 Heat of formation + Delta-G solvation = 112.645885 kcal Electronic energy + Delta-G solvation = -21907.281447 eV Core-core repulsion = 18566.675644 eV Total energy + Delta-G solvation = -3340.605804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.028 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.37022 -39.20062 -36.82399 -34.28320 -33.96449 -32.02825 -30.83182 -29.79663 -29.67862 -27.78137 -26.12393 -25.06803 -23.27692 -21.62595 -21.35939 -20.50886 -19.00172 -17.75507 -17.01415 -16.26540 -15.95072 -15.23005 -14.99615 -14.58986 -14.31293 -14.08167 -13.91300 -13.65771 -13.29070 -13.02334 -12.71476 -12.32084 -12.16910 -11.75472 -11.52078 -11.41672 -11.24747 -11.12794 -10.92471 -10.86356 -10.37134 -10.13821 -9.97022 -9.67228 -9.51238 -9.13174 -8.29940 -8.22219 -8.10464 -7.16131 -6.92018 -4.69826 1.14931 1.77544 2.55291 2.72546 2.79339 2.99456 3.00493 3.00926 3.15445 3.79809 3.86489 4.36598 4.48774 4.59973 4.96033 5.09488 5.13463 5.37313 5.44855 5.55393 5.64288 5.76797 5.93576 5.98197 6.12423 6.40410 6.49074 6.65651 6.71078 6.87959 6.95436 7.06172 7.19379 7.38288 7.46805 7.78971 7.95467 8.09441 8.41888 8.64239 8.65417 9.39613 9.97807 Molecular weight = 348.03amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.002987 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.331033 B = 9371.458576 C =10408.982288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.775 5.775 2 C 0.078 3.922 3 Si 0.911 3.089 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.451 4.451 8 H 0.083 0.917 9 C 0.138 3.862 10 C -0.281 4.281 11 C 0.119 3.881 12 N -0.607 5.607 13 C 0.284 3.716 14 N -0.474 5.474 15 C 0.056 3.944 16 C 0.101 3.899 17 N -0.436 5.436 18 C -0.040 4.040 19 Br 0.009 6.991 20 C 0.021 3.979 21 N -0.480 5.480 22 C 0.246 3.754 23 C 0.147 3.853 24 C -0.216 4.216 25 H 0.286 0.714 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.052 0.948 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.179 0.821 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.113 -6.980 -8.632 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.481 4.481 8 H 0.101 0.899 9 C 0.129 3.871 10 C -0.305 4.305 11 C -0.034 4.034 12 N -0.328 5.328 13 C 0.060 3.940 14 N -0.193 5.193 15 C -0.073 4.073 16 C -0.021 4.021 17 N -0.119 5.119 18 C -0.234 4.234 19 Br 0.091 6.909 20 C -0.132 4.132 21 N -0.199 5.199 22 C -0.018 4.018 23 C 0.019 3.981 24 C -0.241 4.241 25 H 0.097 0.903 26 H 0.119 0.881 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.196 0.804 33 H 0.137 0.863 34 H 0.090 0.910 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.303 -7.225 -8.895 16.096 hybrid contribution 0.959 0.667 0.420 1.241 sum -10.344 -6.558 -8.475 14.894 Atomic orbital electron populations 1.69763 1.07690 1.29985 1.32441 1.25999 0.94782 1.01637 0.91910 0.86304 0.80196 0.79797 0.80196 1.18539 1.20072 1.18826 1.19608 0.98069 0.90814 1.39638 0.89901 1.17681 0.90168 0.92270 0.86931 1.21583 1.05337 0.93901 1.09659 1.21308 0.90916 0.96833 0.94332 1.67077 1.16557 1.27774 1.21350 1.19112 0.88716 0.90674 0.95533 1.59435 1.29747 1.16251 1.13910 1.22210 0.91341 0.90652 1.03062 1.22430 1.00652 0.92251 0.86763 1.45362 1.16601 1.28446 1.21515 1.22658 0.94818 1.06872 0.99028 1.96691 1.25818 1.70921 1.97439 1.22373 0.94068 0.95695 1.01076 1.70101 1.13565 1.26333 1.09878 1.23377 0.93289 0.89548 0.95583 1.20790 0.89410 1.02540 0.85401 1.21668 1.00858 0.96111 1.05446 0.90273 0.88066 0.86151 0.86478 0.93001 0.88737 0.88667 0.80390 0.86258 0.91045 0.85071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.92 10.90 55.55 0.61 -18.32 16 2 C 0.08 1.83 5.20 -17.35 -0.09 1.74 16 3 Si 0.91 17.57 29.59 -169.99 -5.03 12.54 16 4 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.45 -11.17 9.12 -37.65 -0.34 -11.52 16 8 H 0.08 1.96 7.90 -52.49 -0.41 1.54 16 9 C 0.14 3.46 5.61 -106.55 -0.60 2.86 16 10 C -0.28 -6.44 9.85 -39.07 -0.38 -6.82 16 11 C 0.12 2.55 11.10 -18.04 -0.20 2.35 16 12 N -0.61 -13.27 8.46 -12.82 -0.11 -13.38 16 13 C 0.28 6.30 6.39 -154.97 -0.99 5.31 16 14 N -0.47 -9.01 4.68 -173.78 -0.81 -9.82 16 15 C 0.06 0.88 4.91 -3.57 -0.02 0.86 16 16 C 0.10 1.34 7.11 -3.81 -0.03 1.31 16 17 N -0.44 -6.61 3.14 -111.75 -0.35 -6.97 16 18 C -0.04 -0.57 7.43 -16.85 -0.13 -0.69 16 19 Br 0.01 0.10 33.96 -68.01 -2.31 -2.21 16 20 C 0.02 0.30 11.85 -17.57 -0.21 0.09 16 21 N -0.48 -8.26 11.24 -10.52 -0.12 -8.38 16 22 C 0.25 4.20 7.77 -155.10 -1.20 3.00 16 23 C 0.15 2.62 5.45 -4.59 -0.03 2.59 16 24 C -0.22 -5.26 7.98 -38.43 -0.31 -5.57 16 25 H 0.29 6.41 8.29 -40.82 -0.34 6.07 16 26 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 27 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 28 H 0.12 1.90 7.27 -51.93 -0.38 1.53 16 29 H 0.05 0.83 8.07 -51.93 -0.42 0.41 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.12 2.22 7.14 -51.93 -0.37 1.85 16 34 H 0.07 1.25 8.12 -51.93 -0.42 0.83 16 35 H 0.13 3.31 5.36 -52.49 -0.28 3.03 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -27.12 315.69 -11.42 -38.54 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -3.53 Total: 7.72 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -4.52 Total: -4.48 kcal Atomic # 7 Polarization: -56.08 SS G_CDS: -0.79 Total: -56.87 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -2.31 Total: -2.21 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.12 -11.42 -38.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166707824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.190 kcal (2) G-P(sol) polarization free energy of solvation -27.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds