Wall clock time and date at job start Wed Apr 1 2020 04:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30748 * 1 3 3 Si 1.86807 * 119.99461 * 2 1 4 4 H 1.48494 * 109.46905 * 239.99700 * 3 2 1 5 5 H 1.48496 * 109.47235 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.46632 * 119.99631 * 3 2 1 7 7 C 1.40019 * 120.00473 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00088 * 197.23067 * 7 2 1 9 9 C 1.41555 * 119.99610 * 17.23506 * 7 2 1 10 10 C 1.41191 * 120.98855 * 203.19707 * 9 7 2 11 11 C 1.36555 * 119.14331 * 179.97438 * 10 9 7 12 12 N 1.32098 * 121.27124 * 359.73939 * 11 10 9 13 13 C 1.32535 * 122.21332 * 0.53809 * 12 11 10 14 14 N 1.39084 * 119.65885 * 179.74344 * 13 12 11 15 15 C 1.46974 * 110.99486 * 359.72444 * 14 13 12 16 16 C 1.53411 * 109.65422 * 165.08555 * 15 14 13 17 17 N 1.46531 * 108.26643 * 49.67816 * 16 15 14 18 18 C 1.35983 * 128.72953 * 163.48871 * 17 16 15 19 19 Br 1.89099 * 126.66709 * 0.30840 * 18 17 16 20 20 C 1.35036 * 106.64503 * 180.27362 * 18 17 16 21 21 N 1.34393 * 108.09140 * 359.97438 * 20 18 17 22 22 C 1.29867 * 109.21057 * 359.91818 * 21 20 18 23 23 C 1.47324 * 111.00162 * 235.53489 * 14 13 12 24 24 C 1.38746 * 120.68680 * 359.46628 * 13 12 11 25 25 H 0.96993 * 120.00397 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.43114 * 359.95808 * 10 9 7 27 27 H 1.07996 * 119.36612 * 180.02562 * 11 10 9 28 28 H 1.08992 * 109.44314 * 45.03340 * 15 14 13 29 29 H 1.09001 * 109.44185 * 285.14338 * 15 14 13 30 30 H 1.09005 * 109.71402 * 169.37832 * 16 15 14 31 31 H 1.08998 * 109.71296 * 289.96898 * 16 15 14 32 32 H 1.08001 * 125.95511 * 180.02562 * 20 18 17 33 33 H 1.09001 * 109.73358 * 293.94012 * 23 14 13 34 34 H 1.08999 * 109.74241 * 54.59184 * 23 14 13 35 35 H 1.07994 * 120.66867 * 180.23207 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 3.0951 1.6965 -1.2124 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6966 1.2126 7 6 2.0077 -1.2125 0.0005 8 1 3.0513 -1.2333 0.2776 9 6 1.3476 -2.4111 -0.3622 10 6 1.8281 -3.6657 0.0720 11 6 1.1616 -4.7981 -0.2998 12 7 0.0768 -4.7397 -1.0512 13 6 -0.4165 -3.5912 -1.4920 14 7 -1.5593 -3.5919 -2.2846 15 6 -2.0427 -4.9614 -2.5104 16 6 -3.4763 -4.9194 -3.0547 17 7 -3.5145 -3.9769 -4.1760 18 6 -4.4630 -3.8404 -5.1408 19 35 -6.0526 -4.8502 -5.3125 20 6 -4.0492 -2.8431 -5.9517 21 7 -2.8745 -2.3862 -5.4853 22 6 -2.5470 -3.0565 -4.4223 23 6 -1.3176 -2.8956 -3.5602 24 6 0.1922 -2.3877 -1.1661 25 1 -0.4850 0.8399 -0.0004 26 1 2.7116 -3.7291 0.6900 27 1 1.5258 -5.7596 0.0306 28 1 -2.0280 -5.5111 -1.5693 29 1 -1.3953 -5.4604 -3.2315 30 1 -3.7683 -5.9118 -3.3986 31 1 -4.1574 -4.5867 -2.2714 32 1 -4.5716 -2.4759 -6.8227 33 1 -1.1356 -1.8373 -3.3731 34 1 -0.4549 -3.3344 -4.0615 35 1 -0.2121 -1.4517 -1.5223 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166707824.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:37 Heat of formation + Delta-G solvation = 98.605846 kcal Electronic energy + Delta-G solvation = -21907.890269 eV Core-core repulsion = 18566.675644 eV Total energy + Delta-G solvation = -3341.214625 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.028 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.57184 -40.84378 -38.34404 -35.97351 -35.31114 -33.18422 -32.54749 -31.21608 -31.00529 -29.19879 -27.90787 -26.42588 -24.66448 -23.32386 -22.58904 -22.11008 -20.30151 -19.43192 -18.27785 -17.65005 -17.51274 -16.81668 -16.49195 -16.02761 -16.01857 -15.38620 -15.18117 -15.05340 -14.74171 -14.40562 -14.32338 -13.88820 -13.51934 -13.20005 -13.11556 -12.79692 -12.76006 -12.59571 -12.18633 -11.99006 -11.90379 -11.88504 -11.25834 -11.13117 -10.88069 -10.65921 -10.01087 -9.92141 -9.45161 -8.84558 -8.68087 -6.56968 0.08356 0.60222 0.81016 0.99359 1.39613 1.51017 1.56288 1.63312 1.78759 2.17791 2.39571 2.74606 3.09850 3.39971 3.63981 3.78291 3.92430 3.97823 4.13603 4.14766 4.30029 4.45405 4.51188 4.66725 4.77588 4.90527 4.93148 4.99824 5.16247 5.23026 5.39117 5.50669 5.66788 5.73904 5.81840 5.96172 6.30060 6.62843 6.75351 6.81440 6.82777 7.62910 8.22805 Molecular weight = 348.03amu Principal moments of inertia in cm(-1) A = 0.019209 B = 0.002987 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.331033 B = 9371.458576 C =10408.982288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.041 3.959 3 Si 0.982 3.018 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.483 4.483 8 H 0.085 0.915 9 C 0.110 3.890 10 C -0.297 4.297 11 C 0.120 3.880 12 N -0.605 5.605 13 C 0.290 3.710 14 N -0.482 5.482 15 C 0.060 3.940 16 C 0.106 3.894 17 N -0.436 5.436 18 C -0.037 4.037 19 Br 0.046 6.954 20 C 0.009 3.991 21 N -0.502 5.502 22 C 0.223 3.777 23 C 0.157 3.843 24 C -0.241 4.241 25 H 0.291 0.709 26 H 0.113 0.887 27 H 0.159 0.841 28 H 0.115 0.885 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.206 0.794 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.225 -7.969 -9.190 16.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.178 4.178 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.514 4.514 8 H 0.103 0.897 9 C 0.102 3.898 10 C -0.321 4.321 11 C -0.033 4.033 12 N -0.325 5.325 13 C 0.064 3.936 14 N -0.201 5.201 15 C -0.068 4.068 16 C -0.015 4.015 17 N -0.119 5.119 18 C -0.231 4.231 19 Br 0.128 6.872 20 C -0.143 4.143 21 N -0.222 5.222 22 C -0.041 4.041 23 C 0.029 3.971 24 C -0.267 4.267 25 H 0.102 0.898 26 H 0.132 0.868 27 H 0.176 0.824 28 H 0.133 0.867 29 H 0.069 0.931 30 H 0.145 0.855 31 H 0.120 0.880 32 H 0.222 0.778 33 H 0.118 0.882 34 H 0.086 0.914 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.423 -8.240 -9.449 17.650 hybrid contribution 1.168 0.840 0.551 1.541 sum -11.255 -7.400 -8.898 16.143 Atomic orbital electron populations 1.69829 1.09134 1.31079 1.33078 1.26816 0.95420 1.04658 0.90868 0.85244 0.78841 0.75413 0.80288 1.18326 1.19329 1.18033 1.19902 0.98453 0.91875 1.41142 0.89670 1.18088 0.90825 0.93485 0.87429 1.21803 1.06172 0.93765 1.10346 1.21889 0.90234 0.97993 0.93149 1.67240 1.16699 1.27213 1.21348 1.19299 0.88937 0.90149 0.95170 1.59324 1.28209 1.18301 1.14300 1.22237 0.92860 0.88591 1.03087 1.22519 0.98864 0.93578 0.86576 1.45466 1.16374 1.28119 1.21943 1.23044 0.95407 1.06707 0.97910 1.96737 1.23311 1.69849 1.97318 1.22885 0.93414 0.95948 1.02046 1.70035 1.15007 1.26965 1.10195 1.23032 0.93786 0.91095 0.96189 1.20509 0.90290 1.01270 0.85009 1.21589 1.01830 0.96360 1.06873 0.89784 0.86845 0.82404 0.86699 0.93099 0.85474 0.87971 0.77754 0.88177 0.91377 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.75 10.90 21.84 0.24 -40.51 16 2 C 0.04 1.95 5.20 85.29 0.44 2.39 16 3 Si 0.98 36.43 29.59 68.60 2.03 38.46 16 4 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 6 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 7 C -0.48 -24.72 9.12 23.52 0.21 -24.51 16 8 H 0.09 4.14 7.90 -2.91 -0.02 4.11 16 9 C 0.11 5.69 5.61 -21.11 -0.12 5.57 16 10 C -0.30 -13.73 9.85 22.60 0.22 -13.51 16 11 C 0.12 5.04 11.10 84.26 0.94 5.97 16 12 N -0.60 -26.13 8.46 -194.47 -1.65 -27.77 16 13 C 0.29 13.08 6.39 132.90 0.85 13.93 16 14 N -0.48 -18.53 4.68 -703.72 -3.29 -21.83 16 15 C 0.06 1.82 4.91 86.43 0.42 2.25 16 16 C 0.11 2.58 7.11 86.51 0.62 3.19 16 17 N -0.44 -12.56 3.14 -507.46 -1.59 -14.15 16 18 C -0.04 -0.96 7.43 83.31 0.62 -0.34 16 19 Br 0.05 0.85 33.96 -20.37 -0.69 0.15 16 20 C 0.01 0.25 11.85 83.56 0.99 1.24 16 21 N -0.50 -17.16 11.24 -187.20 -2.10 -19.26 16 22 C 0.22 7.60 7.77 138.17 1.07 8.67 16 23 C 0.16 5.80 5.45 85.57 0.47 6.27 16 24 C -0.24 -12.25 7.98 23.01 0.18 -12.06 16 25 H 0.29 13.44 8.29 -92.71 -0.77 12.67 16 26 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 27 H 0.16 5.32 8.06 -2.91 -0.02 5.30 16 28 H 0.11 3.57 7.27 -2.39 -0.02 3.56 16 29 H 0.05 1.57 8.07 -2.39 -0.02 1.55 16 30 H 0.13 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.21 4.23 8.06 -2.91 -0.02 4.20 16 33 H 0.10 4.01 7.14 -2.39 -0.02 3.99 16 34 H 0.07 2.50 8.12 -2.39 -0.02 2.48 16 35 H 0.11 6.09 5.36 -2.91 -0.02 6.07 16 Total: -1.00 -59.45 315.69 0.99 -58.46 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.13 Total: 27.37 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 6.92 Total: -0.92 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -8.40 Total: -123.53 kcal Atomic # 14 Polarization: 36.43 SS G_CDS: 2.03 Total: 38.46 kcal Atomic # 35 Polarization: 0.85 SS G_CDS: -0.69 Total: 0.15 kcal Total: -59.45 0.99 -58.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166707824.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.066 kcal (2) G-P(sol) polarization free energy of solvation -59.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds