Wall clock time and date at job start Wed Apr 1 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48494 * 109.47317 * 274.99337 * 3 2 1 5 5 H 1.48507 * 109.46631 * 34.99088 * 3 2 1 6 6 H 1.48494 * 109.47173 * 154.98844 * 3 2 1 7 7 C 1.39932 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99597 * 200.22384 * 7 2 1 9 9 C 1.41406 * 120.00058 * 20.22450 * 7 2 1 10 10 C 1.40747 * 120.19178 * 217.81170 * 9 7 2 11 11 C 1.37877 * 119.85929 * 180.02562 * 10 9 7 12 12 F 1.35105 * 119.86170 * 179.97438 * 11 10 9 13 13 C 1.38752 * 120.27645 * 359.97367 * 11 10 9 14 14 C 1.39227 * 120.39643 * 0.02562 * 13 11 10 15 15 N 1.39877 * 119.93074 * 180.02562 * 14 13 11 16 16 C 1.37728 * 119.99945 * 42.79387 * 15 14 13 17 17 N 1.30429 * 119.99589 * 185.72868 * 16 15 14 18 18 S 1.76192 * 120.00151 * 5.72750 * 16 15 14 19 19 C 1.81003 * 100.00113 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47401 * 179.97438 * 19 18 16 21 21 S 1.81400 * 109.47104 * 179.97438 * 20 19 18 22 22 O 1.42095 * 110.54353 * 291.62631 * 21 20 19 23 23 O 1.42097 * 110.53985 * 68.38060 * 21 20 19 24 24 O 1.52202 * 104.44619 * 180.02562 * 21 20 19 25 25 C 1.38311 * 120.13375 * 0.29445 * 14 13 11 26 26 H 0.97000 * 119.99629 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.07281 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.80423 * 180.02562 * 13 11 10 29 29 H 0.97002 * 119.99863 * 222.78498 * 15 14 13 30 30 H 0.96995 * 120.00172 * 354.98126 * 17 16 15 31 31 H 1.09002 * 109.47241 * 300.00517 * 19 18 16 32 32 H 1.09007 * 109.46825 * 59.99920 * 19 18 16 33 33 H 1.08995 * 109.47351 * 300.00877 * 20 19 18 34 34 H 1.08998 * 109.46701 * 60.00190 * 20 19 18 35 35 H 0.96701 * 113.99631 * 180.02562 * 24 21 20 36 36 H 1.07992 * 120.13697 * 179.72539 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3844 2.1073 -1.3947 5 1 1.4965 2.6199 0.8029 6 1 3.5887 1.4120 0.5919 7 6 2.0080 -1.2119 -0.0005 8 1 3.0380 -1.2408 0.3228 9 6 1.3663 -2.3985 -0.4244 10 6 1.6285 -3.6172 0.2291 11 6 0.9994 -4.7702 -0.1902 12 9 1.2514 -5.9401 0.4367 13 6 0.1086 -4.7340 -1.2534 14 6 -0.1590 -3.5346 -1.9078 15 7 -1.0592 -3.5093 -2.9781 16 6 -2.2410 -4.2123 -2.9008 17 7 -3.0282 -4.2806 -3.9385 18 16 -2.6893 -5.0195 -1.4002 19 6 -4.2732 -5.7434 -1.8937 20 6 -4.8693 -6.5173 -0.7161 21 16 -6.4570 -7.2421 -1.2106 22 8 -7.4269 -6.2244 -1.4176 23 8 -6.2581 -8.2707 -2.1705 24 8 -6.9427 -7.9757 0.0314 25 6 0.4677 -2.3692 -1.5053 26 1 -0.4849 0.8401 -0.0004 27 1 2.3209 -3.6491 1.0572 28 1 -0.3802 -5.6417 -1.5752 29 1 -0.8511 -2.9964 -3.7747 30 1 -2.8181 -3.7772 -4.7405 31 1 -4.9583 -4.9497 -2.1916 32 1 -4.1168 -6.4222 -2.7322 33 1 -4.1840 -7.3109 -0.4186 34 1 -5.0255 -5.8388 0.1226 35 1 -7.7939 -8.4204 -0.0822 36 1 0.2636 -1.4397 -2.0157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168097597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:59 Heat of formation + Delta-G solvation = -131.247006 kcal Electronic energy + Delta-G solvation = -25021.728927 eV Core-core repulsion = 20866.709421 eV Total energy + Delta-G solvation = -4155.019506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.045 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -47.91340 -38.65896 -38.60935 -37.44915 -36.34874 -36.30655 -33.91176 -33.46971 -32.12034 -29.67210 -27.87212 -25.68729 -24.90758 -22.84349 -21.35999 -21.29086 -20.80379 -18.73633 -18.12020 -17.80509 -17.25524 -16.95324 -16.34287 -15.70271 -15.37046 -15.25865 -15.16149 -15.02869 -14.85822 -14.54648 -14.33931 -13.56414 -13.48654 -13.24396 -13.12156 -12.80640 -12.63264 -12.46958 -12.32673 -12.28579 -12.05695 -11.83122 -11.33124 -11.25259 -11.19234 -10.87613 -10.71140 -10.50676 -10.29886 -9.98035 -9.60779 -9.34910 -8.78508 -7.71025 -7.52251 -7.18350 -6.97582 -4.66186 -0.15842 1.44379 2.11250 2.16818 2.35525 2.56004 2.76877 2.98601 3.01290 3.02133 3.23263 3.79647 3.83639 3.98866 4.10853 4.33243 4.56329 5.10768 5.19733 5.22988 5.45403 5.47280 5.61853 5.77596 6.08263 6.30653 6.41426 6.66953 6.83511 6.97404 7.09215 7.34251 7.53763 7.62559 7.73457 7.98403 8.30866 8.35372 8.56341 8.63465 10.00536 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002611 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.934188 B =10719.616668 C =11214.304346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.082 3.918 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.472 4.472 8 H 0.086 0.914 9 C 0.156 3.844 10 C -0.251 4.251 11 C 0.137 3.863 12 F -0.161 7.161 13 C -0.286 4.286 14 C 0.170 3.830 15 N -0.678 5.678 16 C 0.404 3.596 17 N -0.780 5.780 18 S 0.037 5.963 19 C -0.126 4.126 20 C -0.600 4.600 21 S 2.642 3.358 22 O -0.966 6.966 23 O -0.966 6.966 24 O -0.898 6.898 25 C -0.180 4.180 26 H 0.284 0.716 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.403 0.597 30 H 0.333 0.667 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.459 0.541 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.555 -8.991 -0.952 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.501 4.501 8 H 0.104 0.896 9 C 0.153 3.847 10 C -0.272 4.272 11 C 0.117 3.883 12 F -0.140 7.140 13 C -0.310 4.310 14 C 0.075 3.925 15 N -0.315 5.315 16 C 0.015 3.985 17 N -0.421 5.421 18 S 0.264 5.736 19 C -0.276 4.276 20 C -0.730 4.730 21 S 2.733 3.267 22 O -0.964 6.964 23 O -0.965 6.965 24 O -0.767 6.767 25 C -0.202 4.202 26 H 0.095 0.905 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.241 0.759 30 H 0.151 0.849 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.165 0.835 34 H 0.165 0.835 35 H 0.328 0.672 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.221 -9.525 -0.071 13.971 hybrid contribution 0.741 1.712 -1.591 2.451 sum -9.480 -7.814 -1.662 12.397 Atomic orbital electron populations 1.69818 1.07611 1.29810 1.33715 1.25856 0.94669 1.01186 0.92092 0.86314 0.80756 0.80595 0.79236 1.19299 1.20207 1.18400 1.19482 0.99397 0.91077 1.40123 0.89571 1.17118 0.88258 0.91542 0.87807 1.21180 1.08849 0.92445 1.04749 1.17208 0.97772 0.80468 0.92810 1.91368 1.93372 1.47453 1.81783 1.20161 1.09017 0.97378 1.04440 1.17263 0.92361 0.93607 0.89256 1.43172 1.17135 1.52092 1.19062 1.24511 0.85239 0.90701 0.98046 1.70326 1.34833 1.33043 1.03862 1.86803 1.17828 1.61244 1.07709 1.23208 1.02034 1.03832 0.98491 1.30042 1.21479 1.12821 1.08667 1.03716 0.76915 0.74485 0.71588 1.93650 1.56882 1.62217 1.83677 1.93647 1.86808 1.55574 1.60450 1.85442 1.49503 1.75907 1.65847 1.20978 1.04833 0.94642 0.99718 0.90538 0.87152 0.86229 0.75894 0.84918 0.87292 0.87169 0.83453 0.83463 0.67196 0.87161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -18.93 12.11 55.55 0.67 -18.26 16 2 C 0.08 1.89 5.01 -17.34 -0.09 1.80 16 3 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 4 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.47 -11.37 8.96 -37.74 -0.34 -11.71 16 8 H 0.09 2.00 7.92 -52.49 -0.42 1.59 16 9 C 0.16 3.75 5.37 -106.86 -0.57 3.18 16 10 C -0.25 -5.73 9.76 -38.77 -0.38 -6.11 16 11 C 0.14 2.96 7.28 -39.52 -0.29 2.67 16 12 F -0.16 -3.30 17.26 2.25 0.04 -3.26 16 13 C -0.29 -5.85 7.87 -39.02 -0.31 -6.16 16 14 C 0.17 3.48 5.92 -83.79 -0.50 2.98 16 15 N -0.68 -11.87 5.43 -10.50 -0.06 -11.93 16 16 C 0.40 6.82 7.95 -87.92 -0.70 6.12 16 17 N -0.78 -12.38 12.90 30.77 0.40 -11.99 16 18 S 0.04 0.58 18.18 -107.50 -1.95 -1.37 16 19 C -0.13 -1.54 4.85 37.16 0.18 -1.36 16 20 C -0.60 -5.19 6.17 37.16 0.23 -4.96 16 21 S 2.64 21.43 5.67 -107.50 -0.61 20.82 16 22 O -0.97 -11.17 18.09 -67.04 -1.21 -12.38 16 23 O -0.97 -11.01 18.09 -67.03 -1.21 -12.22 16 24 O -0.90 -4.77 13.27 -67.56 -0.90 -5.67 16 25 C -0.18 -4.08 8.63 -38.67 -0.33 -4.42 16 26 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 27 H 0.11 2.40 8.06 -52.49 -0.42 1.98 16 28 H 0.12 2.29 6.39 -52.44 -0.34 1.96 16 29 H 0.40 6.19 8.84 -40.82 -0.36 5.83 16 30 H 0.33 4.81 8.81 -40.82 -0.36 4.45 16 31 H 0.11 1.32 8.13 -51.92 -0.42 0.90 16 32 H 0.11 1.31 8.13 -51.91 -0.42 0.88 16 33 H 0.15 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.15 1.07 8.14 -51.92 -0.42 0.65 16 35 H 0.46 0.31 9.03 67.38 0.61 0.92 16 36 H 0.11 2.57 7.27 -52.49 -0.38 2.19 16 LS Contribution 346.86 15.07 5.23 5.23 Total: -1.00 -32.63 346.86 -10.22 -42.86 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -2.49 Total: 13.84 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -3.09 Total: -17.96 kcal Atomic # 7 Polarization: -43.19 SS G_CDS: 1.01 Total: -42.18 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -3.32 Total: -30.27 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Atomic # 16 Polarization: 22.01 SS G_CDS: -2.56 Total: 19.45 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.63 -10.22 -42.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168097597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.391 kcal (2) G-P(sol) polarization free energy of solvation -32.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds