Wall clock time and date at job start Wed Apr 1 2020 04:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48494 * 109.47317 * 274.99337 * 3 2 1 5 5 H 1.48507 * 109.46631 * 34.99088 * 3 2 1 6 6 H 1.48494 * 109.47173 * 154.98844 * 3 2 1 7 7 C 1.39932 * 119.99819 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99597 * 200.22384 * 7 2 1 9 9 C 1.41406 * 120.00058 * 20.22450 * 7 2 1 10 10 C 1.40747 * 120.19178 * 217.81170 * 9 7 2 11 11 C 1.37877 * 119.85929 * 180.02562 * 10 9 7 12 12 F 1.35105 * 119.86170 * 179.97438 * 11 10 9 13 13 C 1.38752 * 120.27645 * 359.97367 * 11 10 9 14 14 C 1.39227 * 120.39643 * 0.02562 * 13 11 10 15 15 N 1.39877 * 119.93074 * 180.02562 * 14 13 11 16 16 C 1.37728 * 119.99945 * 42.79387 * 15 14 13 17 17 N 1.30429 * 119.99589 * 185.72868 * 16 15 14 18 18 S 1.76192 * 120.00151 * 5.72750 * 16 15 14 19 19 C 1.81003 * 100.00113 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47401 * 179.97438 * 19 18 16 21 21 S 1.81400 * 109.47104 * 179.97438 * 20 19 18 22 22 O 1.42095 * 110.54353 * 291.62631 * 21 20 19 23 23 O 1.42097 * 110.53985 * 68.38060 * 21 20 19 24 24 O 1.52202 * 104.44619 * 180.02562 * 21 20 19 25 25 C 1.38311 * 120.13375 * 0.29445 * 14 13 11 26 26 H 0.97000 * 119.99629 * 0.02562 * 1 2 3 27 27 H 1.07996 * 120.07281 * 0.02562 * 10 9 7 28 28 H 1.07996 * 119.80423 * 180.02562 * 13 11 10 29 29 H 0.97002 * 119.99863 * 222.78498 * 15 14 13 30 30 H 0.96995 * 120.00172 * 354.98126 * 17 16 15 31 31 H 1.09002 * 109.47241 * 300.00517 * 19 18 16 32 32 H 1.09007 * 109.46825 * 59.99920 * 19 18 16 33 33 H 1.08995 * 109.47351 * 300.00877 * 20 19 18 34 34 H 1.08998 * 109.46701 * 60.00190 * 20 19 18 35 35 H 0.96701 * 113.99631 * 180.02562 * 24 21 20 36 36 H 1.07992 * 120.13697 * 179.72539 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3844 2.1073 -1.3947 5 1 1.4965 2.6199 0.8029 6 1 3.5887 1.4120 0.5919 7 6 2.0080 -1.2119 -0.0005 8 1 3.0380 -1.2408 0.3228 9 6 1.3663 -2.3985 -0.4244 10 6 1.6285 -3.6172 0.2291 11 6 0.9994 -4.7702 -0.1902 12 9 1.2514 -5.9401 0.4367 13 6 0.1086 -4.7340 -1.2534 14 6 -0.1590 -3.5346 -1.9078 15 7 -1.0592 -3.5093 -2.9781 16 6 -2.2410 -4.2123 -2.9008 17 7 -3.0282 -4.2806 -3.9385 18 16 -2.6893 -5.0195 -1.4002 19 6 -4.2732 -5.7434 -1.8937 20 6 -4.8693 -6.5173 -0.7161 21 16 -6.4570 -7.2421 -1.2106 22 8 -7.4269 -6.2244 -1.4176 23 8 -6.2581 -8.2707 -2.1705 24 8 -6.9427 -7.9757 0.0314 25 6 0.4677 -2.3692 -1.5053 26 1 -0.4849 0.8401 -0.0004 27 1 2.3209 -3.6491 1.0572 28 1 -0.3802 -5.6417 -1.5752 29 1 -0.8511 -2.9964 -3.7747 30 1 -2.8181 -3.7772 -4.7405 31 1 -4.9583 -4.9497 -2.1916 32 1 -4.1168 -6.4222 -2.7322 33 1 -4.1840 -7.3109 -0.4186 34 1 -5.0255 -5.8388 0.1226 35 1 -7.7939 -8.4204 -0.0822 36 1 0.2636 -1.4397 -2.0157 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168097597.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:59 Heat of formation + Delta-G solvation = -155.854972 kcal Electronic energy + Delta-G solvation = -25022.796009 eV Core-core repulsion = 20866.709421 eV Total energy + Delta-G solvation = -4156.086587 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.045 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.60019 -40.19485 -39.17564 -38.24494 -37.88341 -37.10258 -35.49518 -34.47655 -33.55228 -31.39727 -29.49518 -27.43598 -25.78868 -24.21538 -23.03204 -22.64888 -21.68860 -19.78567 -19.38539 -18.68086 -18.46049 -17.96653 -17.64516 -17.10949 -16.86744 -16.79957 -16.54416 -16.23117 -16.08394 -15.98072 -15.76387 -14.77219 -14.75186 -14.31951 -14.07456 -13.97286 -13.88739 -13.58455 -13.32764 -13.29211 -13.14521 -13.00486 -12.83567 -12.77061 -12.48881 -12.36812 -12.19089 -12.12789 -11.76964 -11.26685 -11.12236 -10.92178 -10.33103 -9.30886 -8.90880 -8.80294 -8.67967 -6.47623 -0.86181 0.25075 0.55633 0.71410 1.14510 1.30403 1.42301 1.49442 1.54383 1.77840 2.21343 2.38267 2.58806 2.62205 3.29951 3.33863 3.43180 3.75682 3.79514 4.31725 4.38827 4.42834 4.46112 4.59109 4.70893 4.73311 4.94986 5.16029 5.29540 5.31565 5.47293 5.62563 5.86465 5.97415 6.17024 6.27460 6.58392 6.79924 6.85729 7.05355 8.30491 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.002611 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.934188 B =10719.616668 C =11214.304346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.047 3.953 3 Si 0.975 3.025 4 H -0.264 1.264 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.504 4.504 8 H 0.084 0.916 9 C 0.135 3.865 10 C -0.268 4.268 11 C 0.135 3.865 12 F -0.154 7.154 13 C -0.276 4.276 14 C 0.184 3.816 15 N -0.677 5.677 16 C 0.394 3.606 17 N -0.770 5.770 18 S 0.007 5.993 19 C -0.121 4.121 20 C -0.604 4.604 21 S 2.686 3.314 22 O -1.000 7.000 23 O -0.998 6.998 24 O -0.888 6.888 25 C -0.194 4.194 26 H 0.289 0.711 27 H 0.112 0.888 28 H 0.136 0.864 29 H 0.412 0.588 30 H 0.341 0.659 31 H 0.108 0.892 32 H 0.113 0.887 33 H 0.167 0.833 34 H 0.163 0.837 35 H 0.478 0.522 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.447 -9.627 -0.993 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.170 4.170 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.181 1.181 7 C -0.533 4.533 8 H 0.102 0.898 9 C 0.131 3.869 10 C -0.289 4.289 11 C 0.115 3.885 12 F -0.133 7.133 13 C -0.299 4.299 14 C 0.088 3.912 15 N -0.315 5.315 16 C 0.005 3.995 17 N -0.411 5.411 18 S 0.234 5.766 19 C -0.270 4.270 20 C -0.734 4.734 21 S 2.777 3.223 22 O -0.999 6.999 23 O -0.997 6.997 24 O -0.761 6.761 25 C -0.216 4.216 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.154 0.846 29 H 0.251 0.749 30 H 0.160 0.840 31 H 0.126 0.874 32 H 0.132 0.868 33 H 0.185 0.815 34 H 0.181 0.819 35 H 0.352 0.648 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.134 -10.183 -0.140 15.089 hybrid contribution 0.860 1.718 -1.586 2.492 sum -10.274 -8.465 -1.727 13.424 Atomic orbital electron populations 1.69860 1.08920 1.30895 1.34758 1.26583 0.95272 1.03982 0.91129 0.85282 0.79370 0.76389 0.79294 1.18832 1.19659 1.18124 1.19698 0.99632 0.92156 1.41787 0.89781 1.17381 0.88990 0.92072 0.88415 1.21267 1.09572 0.92783 1.05239 1.17258 0.97739 0.80388 0.93097 1.91378 1.93331 1.46888 1.81689 1.20347 1.08092 0.97941 1.03554 1.17203 0.91790 0.92799 0.89423 1.43117 1.17082 1.52654 1.18642 1.24737 0.85047 0.90983 0.98722 1.70333 1.34220 1.32541 1.03977 1.86779 1.20789 1.61282 1.07794 1.23255 0.99679 1.04039 1.00065 1.30115 1.21880 1.13478 1.07899 1.02298 0.75845 0.73283 0.70868 1.93610 1.58191 1.63517 1.84564 1.93609 1.87115 1.56648 1.62307 1.85380 1.50954 1.75777 1.64015 1.20903 1.05788 0.94969 0.99972 0.90008 0.87015 0.84604 0.74867 0.84028 0.87360 0.86806 0.81501 0.81884 0.64822 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.12 12.11 21.82 0.26 -39.85 16 2 C 0.05 2.19 5.01 85.25 0.43 2.62 16 3 Si 0.98 35.66 29.60 68.60 2.03 37.69 16 4 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 5 H -0.27 -9.62 7.11 99.48 0.71 -8.91 16 6 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 7 C -0.50 -24.89 8.96 23.46 0.21 -24.68 16 8 H 0.08 4.03 7.92 -2.91 -0.02 4.00 16 9 C 0.13 6.62 5.37 -21.31 -0.11 6.51 16 10 C -0.27 -12.40 9.76 22.80 0.22 -12.18 16 11 C 0.13 5.77 7.28 22.31 0.16 5.94 16 12 F -0.15 -6.17 17.26 44.97 0.78 -5.39 16 13 C -0.28 -11.06 7.87 22.63 0.18 -10.88 16 14 C 0.18 7.47 5.92 38.11 0.23 7.70 16 15 N -0.68 -23.18 5.43 -187.13 -1.02 -24.20 16 16 C 0.39 12.80 7.95 179.41 1.43 14.22 16 17 N -0.77 -23.22 12.90 -56.57 -0.73 -23.95 16 18 S 0.01 0.20 18.18 -56.49 -1.03 -0.82 16 19 C -0.12 -2.72 4.85 71.98 0.35 -2.37 16 20 C -0.60 -9.00 6.17 71.98 0.44 -8.55 16 21 S 2.69 38.04 5.67 -56.49 -0.32 37.72 16 22 O -1.00 -21.56 18.09 -118.57 -2.15 -23.71 16 23 O -1.00 -20.97 18.09 -118.57 -2.15 -23.11 16 24 O -0.89 -6.98 13.27 -118.07 -1.57 -8.55 16 25 C -0.19 -8.98 8.63 22.86 0.20 -8.78 16 26 H 0.29 12.92 8.30 -92.71 -0.77 12.15 16 27 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 28 H 0.14 4.99 6.39 -2.94 -0.02 4.97 16 29 H 0.41 12.37 8.84 -92.71 -0.82 11.55 16 30 H 0.34 9.28 8.81 -92.71 -0.82 8.46 16 31 H 0.11 2.46 8.13 -2.39 -0.02 2.44 16 32 H 0.11 2.48 8.13 -2.39 -0.02 2.46 16 33 H 0.17 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.16 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.48 -0.67 9.03 -87.93 -0.79 -1.46 16 36 H 0.10 4.72 7.27 -2.91 -0.02 4.70 16 Total: -1.00 -69.29 346.86 -3.39 -72.69 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -1.24 Total: 31.94 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.73 Total: -30.46 kcal Atomic # 7 Polarization: -86.52 SS G_CDS: -1.48 Total: -88.00 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -5.86 Total: -55.36 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.78 Total: -5.39 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 16 Polarization: 38.24 SS G_CDS: -1.35 Total: 36.89 kcal Total: -69.29 -3.39 -72.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168097597.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.167 kcal (2) G-P(sol) polarization free energy of solvation -69.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds